메뉴 건너뛰기




Volumn 224, Issue 1, 2003, Pages 45-52

Quantitative structure-activity relationship (QSAR) analysis of aromatic effector specificity in NtrC-like transcriptional activators from aromatic oxidizing bacteria

Author keywords

Aromatic monooxygenase pathway; Bacterial NtrC like transcriptional activator; Quantitative structure activity relationship; Toluene oxidizing bacterium; Trichloroethylene cometabolism

Indexed keywords

TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR DMPR; TRANSCRIPTION FACTOR NTRC; TRANSCRIPTION FACTOR XYLR; UNCLASSIFIED DRUG;

EID: 0037632601     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1097(03)00400-2     Document Type: Article
Times cited : (7)

References (39)
  • 1
    • 0026049804 scopus 로고
    • Biochemical diversity of trichloroethylene metabolism
    • Ensley B.D. Biochemical diversity of trichloroethylene metabolism. Annu. Rev. Microbiol. 45:1991;283-299.
    • (1991) Annu. Rev. Microbiol. , vol.45 , pp. 283-299
    • Ensley, B.D.1
  • 2
    • 0025248690 scopus 로고
    • Phenol and trichloroethylene degradation by Pseudomonas cepacia G4: Kinetics and interactions between substrates
    • Folsom B.R., Chapman P.J., Pritchard P.H. Phenol and trichloroethylene degradation by Pseudomonas cepacia G4: kinetics and interactions between substrates. Appl. Environ. Microbiol. 56:1990;1279-1285.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1279-1285
    • Folsom, B.R.1    Chapman, P.J.2    Pritchard, P.H.3
  • 3
    • 0000757667 scopus 로고
    • Microbial degradation of aromatic hydrocarbons
    • Gibson, D.T., Ed. Marcel Dekker, New York
    • Gibson, D.T. and Subramanian, V. (1984) Microbial degradation of aromatic hydrocarbons. In: Microbial Degradation of Organic Compounds (Gibson, D.T., Ed.), pp. 181-252. Marcel Dekker, New York.
    • (1984) Microbial Degradation of Organic Compounds , pp. 181-252
    • Gibson, D.T.1    Subramanian, V.2
  • 4
    • 0027136420 scopus 로고
    • Metabolic diversity of aromatic hydrocarbon-degrading bacteria from a petroleum-contaminated aquifer
    • Mikesell M.D., Kukor J.J., Olsen R.H. Metabolic diversity of aromatic hydrocarbon-degrading bacteria from a petroleum-contaminated aquifer. Biodegradation. 4:1993;249-259.
    • (1993) Biodegradation , vol.4 , pp. 249-259
    • Mikesell, M.D.1    Kukor, J.J.2    Olsen, R.H.3
  • 5
    • 0029858051 scopus 로고    scopus 로고
    • Cascade regulation of the toluene-3-monooxygenase operon (tbuA1UVA2C) of Burkholderia pickettii PKO1: Role of the tbuA1 promoter (PtbuA1) in the expression of its cognate activator, TbuT
    • Byrne A.M., Olsen R.H. Cascade regulation of the toluene-3-monooxygenase operon (tbuA1UVA2C) of Burkholderia pickettii PKO1: role of the tbuA1 promoter (PtbuA1) in the expression of its cognate activator, TbuT. J. Bacteriol. 178:1996;6327-6337.
    • (1996) J. Bacteriol. , vol.178 , pp. 6327-6337
    • Byrne, A.M.1    Olsen, R.H.2
  • 6
    • 0030613350 scopus 로고    scopus 로고
    • Phenol- and toluene-degrading microbial populations from an aquifer in which successful trichloroethene cometabolism occurred
    • Fries M.R., Forney L.J., Tiedje J.M. Phenol- and toluene-degrading microbial populations from an aquifer in which successful trichloroethene cometabolism occurred. Appl. Environ. Microbiol. 63:1997;1523-1530.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1523-1530
    • Fries, M.R.1    Forney, L.J.2    Tiedje, J.M.3
  • 7
    • 0030025607 scopus 로고    scopus 로고
    • Comparison of factors influencing trichloroethylene degradation by toluene-oxidizing bacteria
    • Leahy J.G., Byrne A.M., Olsen R.H. Comparison of factors influencing trichloroethylene degradation by toluene-oxidizing bacteria. Appl. Environ. Microbiol. 62:1996;825-833.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 825-833
    • Leahy, J.G.1    Byrne, A.M.2    Olsen, R.H.3
  • 8
    • 0036841518 scopus 로고    scopus 로고
    • Characterization of adaptive response to trichloroethylene-mediated stresses in Ralstonia pickettii PKO1
    • Park J., Kukor J.J., Abriola L.M. Characterization of adaptive response to trichloroethylene-mediated stresses in Ralstonia pickettii PKO1. Appl. Environ. Microbiol. 68:2002;5231-5240.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 5231-5240
    • Park, J.1    Kukor, J.J.2    Abriola, L.M.3
  • 9
    • 0024357889 scopus 로고
    • Regulator and enzyme specifications of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway
    • Abril M.A., Michan C., Timmis K.N., Ramos J.-L. Regulator and enzyme specifications of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway. J. Bacteriol. 171:1989;6782-6790.
    • (1989) J. Bacteriol. , vol.171 , pp. 6782-6790
    • Abril, M.A.1    Michan, C.2    Timmis, K.N.3    Ramos, J.-L.4
  • 10
    • 0028244041 scopus 로고
    • Genetic evidence for activation of the positive transcriptional regulator XylR, a member of the NtrC family of regulators, by effector binding
    • Delgado A., Ramos J.-L. Genetic evidence for activation of the positive transcriptional regulator XylR, a member of the NtrC family of regulators, by effector binding. J. Biol. Chem. 269:1994;8059-8062.
    • (1994) J. Biol. Chem. , vol.269 , pp. 8059-8062
    • Delgado, A.1    Ramos, J.-L.2
  • 11
    • 0029865771 scopus 로고    scopus 로고
    • 54-promoters of the TOL plasmid Pseudomonas putida
    • 54-promoters of the TOL plasmid Pseudomonas putida. J. Mol. Biol. 258:1996;562-574.
    • (1996) J. Mol. Biol. , vol.258 , pp. 562-574
    • Perez-Martin, J.1    De Lorenzo, V.2
  • 14
    • 0027938931 scopus 로고
    • An aromatic effector specificity mutant of the transcriptional regulator DmpR overcomes the growth constraints of Pseudomonas sp. strain CF600 on para-substituted methylphenols
    • Pavel H., Forsman M., Shingler V. An aromatic effector specificity mutant of the transcriptional regulator DmpR overcomes the growth constraints of Pseudomonas sp. strain CF600 on para-substituted methylphenols. J. Bacteriol. 176:1994;7550-7557.
    • (1994) J. Bacteriol. , vol.176 , pp. 7550-7557
    • Pavel, H.1    Forsman, M.2    Shingler, V.3
  • 15
    • 0028325759 scopus 로고
    • Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600
    • Shingler V., Moore T. Sensing of aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600. J. Bacteriol. 176:1994;1555-1560.
    • (1994) J. Bacteriol. , vol.176 , pp. 1555-1560
    • Shingler, V.1    Moore, T.2
  • 16
    • 0029132191 scopus 로고
    • Direct regulation of the ATPase activity of the transcriptional activator DmpR by aromatic compounds
    • Shingler V., Pavel H. Direct regulation of the ATPase activity of the transcriptional activator DmpR by aromatic compounds. Mol. Microbiol. 17:1995;505-513.
    • (1995) Mol. Microbiol. , vol.17 , pp. 505-513
    • Shingler, V.1    Pavel, H.2
  • 17
    • 0025938894 scopus 로고
    • Prokaryotic transcriptional enhancers and enhancer binding proteins
    • Kustu S., North A.K., Weiss D.S. Prokaryotic transcriptional enhancers and enhancer binding proteins. Trends Biochem. Sci. 16:1991;397.
    • (1991) Trends Biochem. Sci. , vol.16 , pp. 397
    • Kustu, S.1    North, A.K.2    Weiss, D.S.3
  • 18
    • 0027340543 scopus 로고
    • 54 bacterial enhancer-binding protein family: Mechanism of action and phylogenetic relationship of their functional domains
    • 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains. J. Bacteriol. 175:1993;6067-6074.
    • (1993) J. Bacteriol. , vol.175 , pp. 6067-6074
    • Morett, E.1    Segovia, L.2
  • 19
    • 0029670970 scopus 로고    scopus 로고
    • 54-dependent regulators: Derepression as a control mechanism
    • 54-dependent regulators: derepression as a control mechanism. Mol. Microbiol. 19:1996;409-416.
    • (1996) Mol. Microbiol. , vol.19 , pp. 409-416
    • Shingler, V.1
  • 20
    • 0033986392 scopus 로고    scopus 로고
    • HbpR, a new member of the XylR/DmpR subclass within the NtrC family of bacterial transcriptional activators, regulates expression of 2-hydroxybiphenyl metabolism in Pseudomonas azelaica HBP1
    • Jaspers M.C.M., Suske W.A., Schmid A., Goslings D.A.M., Kohler H.-P.E., van der Meer J.R. HbpR, a new member of the XylR/DmpR subclass within the NtrC family of bacterial transcriptional activators, regulates expression of 2-hydroxybiphenyl metabolism in Pseudomonas azelaica HBP1. J. Bacteriol. 182:2000;405-417.
    • (2000) J. Bacteriol. , vol.182 , pp. 405-417
    • Jaspers, M.C.M.1    Suske, W.A.2    Schmid, A.3    Goslings, D.A.M.4    Kohler, H.-P.E.5    Van der Meer, J.R.6
  • 21
    • 0038059449 scopus 로고    scopus 로고
    • Fate of halogenated aromatic compounds in soils and sediments
    • American Society of Agronomy, Crop Science Society of America, Soil Science Society of America, Madison, WI
    • Adriaens, P., Barkovskii, A.L. and Albrecht, I.D. (1999) Fate of halogenated aromatic compounds in soils and sediments. In: Bioremediation of Contaminated Soils, Agronomy Monograph no. 37. American Society of Agronomy, Crop Science Society of America, Soil Science Society of America, Madison, WI.
    • (1999) Bioremediation of Contaminated Soils, Agronomy Monograph , vol.37
    • Adriaens, P.1    Barkovskii, A.L.2    Albrecht, I.D.3
  • 22
    • 0037107331 scopus 로고    scopus 로고
    • Modes of action in ecotoxicology: Their role in body burdens, species sensitivity, QSARs, and mixture effects
    • Escher B.I., Hermens J.L.M. Modes of action in ecotoxicology: their role in body burdens, species sensitivity, QSARs, and mixture effects. Environ. Sci. Technol. 36:2002;4201-4217.
    • (2002) Environ. Sci. Technol. , vol.36 , pp. 4201-4217
    • Escher, B.I.1    Hermens, J.L.M.2
  • 23
    • 0034893899 scopus 로고    scopus 로고
    • Influence of substrate exposure history on biodegradation in a porous medium
    • Park J., Chen Y.-M., Kukor J.J., Abriola L.M. Influence of substrate exposure history on biodegradation in a porous medium. J. Contam. Hydrol. 51:2001;233-256.
    • (2001) J. Contam. Hydrol. , vol.51 , pp. 233-256
    • Park, J.1    Chen, Y.-M.2    Kukor, J.J.3    Abriola, L.M.4
  • 25
    • 0031039255 scopus 로고    scopus 로고
    • Expression, inducer spectrum, domain structure, and function of MopR, the regulator of phenol degradation in Acinetobacter calcoaceticus NCIB8250
    • Schirmer F., Ehrt S., Hillen W. Expression, inducer spectrum, domain structure, and function of MopR, the regulator of phenol degradation in Acinetobacter calcoaceticus NCIB8250. J. Bacteriol. 179:1997;1329-1336.
    • (1997) J. Bacteriol. , vol.179 , pp. 1329-1336
    • Schirmer, F.1    Ehrt, S.2    Hillen, W.3
  • 28
    • 0028343156 scopus 로고
    • A novel toluene-3-monooxygenase pathway cloned from Pseudomonas pickettii PKO1
    • Olsen R.H., Kukor J.J., Kaphammer B. A novel toluene-3-monooxygenase pathway cloned from Pseudomonas pickettii PKO1. J. Bacteriol. 176:1994;3749-3756.
    • (1994) J. Bacteriol. , vol.176 , pp. 3749-3756
    • Olsen, R.H.1    Kukor, J.J.2    Kaphammer, B.3
  • 29
    • 0025338561 scopus 로고
    • Molecular cloning, characterization, and regulation of a Pseudomonas pickettii PKO1 gene encoding phenol hydroxylase and expression of the gene in Pseudomonas aeruginosa PAO1c
    • Kukor J.J., Olsen R.H. Molecular cloning, characterization, and regulation of a Pseudomonas pickettii PKO1 gene encoding phenol hydroxylase and expression of the gene in Pseudomonas aeruginosa PAO1c. J. Bacteriol. 172:1990;4624-4630.
    • (1990) J. Bacteriol. , vol.172 , pp. 4624-4630
    • Kukor, J.J.1    Olsen, R.H.2
  • 30
    • 0025914926 scopus 로고
    • Functional analysis of the Pseudomonas putida regulatory protein CatR: Transcriptional studies and determination of the CatR DNA-binding site by hydroxyl-radical footprinting
    • Rothmel R.K., Shinabarger D.L., Parsek M.R., Aldrich T.L., Chakrabarty A.M. Functional analysis of the Pseudomonas putida regulatory protein CatR: transcriptional studies and determination of the CatR DNA-binding site by hydroxyl-radical footprinting. J. Bacteriol. 173:1991;4717-4724.
    • (1991) J. Bacteriol. , vol.173 , pp. 4717-4724
    • Rothmel, R.K.1    Shinabarger, D.L.2    Parsek, M.R.3    Aldrich, T.L.4    Chakrabarty, A.M.5
  • 31
    • 0003785155 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Miller, J.H. (1972) Experiments in Molecular Genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1972) Experiments in Molecular Genetics
    • Miller, J.H.1
  • 32
    • 0003322956 scopus 로고
    • Exploring QSAR: Fundamentals and Applications in Chemistry and Biology
    • American Chemical Society, Washington, DC
    • Hansch, G., Leo, A. and Hoekman, D. (1995) Exploring QSAR: Fundamentals and Applications in Chemistry and Biology. American Chemical Society Professional Reference Book. American Chemical Society, Washington, DC.
    • (1995) American Chemical Society Professional Reference Book
    • Hansch, G.1    Leo, A.2    Hoekman, D.3
  • 33
    • 0001191266 scopus 로고
    • Exploring QSAR: Hydrophobic, Electronic, and Steric Constants
    • American Chemical Society, Washington, DC
    • Hansch, G., Leo, A. and Hoekman, D. (1995) Exploring QSAR: Hydrophobic, Electronic, and Steric Constants. American Chemical Society Professional Reference Book. American Chemical Society, Washington, DC.
    • (1995) American Chemical Society Professional Reference Book
    • Hansch, G.1    Leo, A.2    Hoekman, D.3
  • 36
    • 85031160470 scopus 로고    scopus 로고
    • SPSS Science Inc., SYSTAT8.0 for Windows. Chicago, IL.
    • SPSS Science Inc., SYSTAT8.0 for Windows. Chicago, IL.
  • 37
    • 0036210998 scopus 로고    scopus 로고
    • Development and characterization of a green fluorescent protein-based bacterial biosensor for bioavailable toluene and related compounds
    • Stiner L., Halverson L.J. Development and characterization of a green fluorescent protein-based bacterial biosensor for bioavailable toluene and related compounds. Appl. Environ. Microbiol. 68:2002;1962-1971.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1962-1971
    • Stiner, L.1    Halverson, L.J.2
  • 38
    • 0021058845 scopus 로고
    • Mechanisms of hydroxylation by cytochrome P-450: Metabolism of monohalobenzenes by phenobarbital-induced microsomes
    • Burka L.T., Plucinski T.M., McDonald T.L. Mechanisms of hydroxylation by cytochrome P-450: metabolism of monohalobenzenes by phenobarbital-induced microsomes. Proc. Natl. Acad. Sci. USA. 80:1983;6680-6684.
    • (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 6680-6684
    • Burka, L.T.1    Plucinski, T.M.2    McDonald, T.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.