Identification of protein-coding genes in the genome of vibrio cholerae with more than 98% accuracy using occurrence frequencies of single nucleotides

European Journal of Biochemistry

Volumn 268, Issue 15, 2001, Pages 4261-4268

  Wang, Ju ^a   Zhang, Chun Ting ^a  

^a TIANJIN UNIVERSITY   (China)

Author keywords

Gene identification; Genome; Protein coding gene; Vibrio cholerae; Z curve

Indexed keywords

ACCURACY; ARTICLE; COMPUTER PROGRAM; CONTROLLED STUDY; DATA BASE; GENE EXPRESSION; GENE NUMBER; GENE SEQUENCE; GENETIC CODE; GENOME; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; PROTEIN ANALYSIS; REGULATORY MECHANISM; SENSITIVITY AND SPECIFICITY; SINGLE NUCLEOTIDE POLYMORPHISM; TECHNIQUE; VIBRIO CHOLERAE;

ALGORITHMS; CODON; DATABASES, FACTUAL; GENOME, PLANT; MODELS, THEORETICAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OPEN READING FRAMES; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; VIBRIO CHOLERAE;

EID: 0034830866     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1432-1327.2001.02341.x     Document Type: Article

References (27)

1. A bacteriophage encoding a pathogenicity island, a type-IV pilus and a phage. receptor in cholera bacteria
2. Global climate and infectious disease: The cholera paradigm
3. DNA sequence of both cholera pathogen Vibrio cholerae
4. Analysis of distribution of bases in the coding sequences by a diagrammatic technique
5. Z curves, an intuitive tool for visualizing and analyzing the DNA sequences
6. MIPS: A database for protein sequences, homology data and yeast genome information
7. Evaluation of gene structure prediction programs
8. Prediction of complete gene structures in human genomic DNA
9. Heuristic informational analysis of sequences
10. Assessment of protein coding measures
11. New genes in old sequence: Strategy for finding genes in the bacterial genome
12. Identification of protein coding regions in the human genome by quadratic discriminant analysis
13. Microbial gene identification using interpolated Markov models
14. Improved microbial gene identification with GLIMMER
15. A graphic approach to analyzing codon usage in 1562 Escherichia coli protein coding sequences
16. Studies on the relationships between the synonymous codon usage and protein secondary structural units
17. Second codon positions of genes and the secondary structures of proteins: Relationships and implications for the origin of the genetic code
18. Dinucleotide relative abundance extremes: A genomic signature
19. Asymmetry of coding versus non-coding strands in coding sequences of different genomes
20. Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes
21. Analyzing genomes with cumulative skew diagrams
22. Translation framing code and frame-monitoring mechanism as suggested by analysis of mRNA and 16S rRNA nucleotide sequences
23. From bioinformatics to computational biology
24. Gene-finding approaches for eukaryotes
25. Computational methods for exon detection