Increased resonance energy transfer between fluorophores bound to DNA in proximity to metallic silver particles

Analytical Biochemistry

Volumn 315, Issue 2, 2003, Pages 160-169

  Malicka, Joanna ^a   Gryczynski, Ignacy ^a   Fang, Jiyu ^a,b   Kusba, Jozef ^a,c   Lakowicz, Joseph R ^a  

^a UNIVERSITY OF MARYLAND   (United States)

^b NAVAL RESEARCH LABORATORY   (United States)

^c GDANSK UNIVERSITY OF TECHNOLOGY   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ENERGY TRANSFER; FLUOROPHORES; METALS; QUARTZ;

COVALENTLY BOUND; DONOR-ACCEPTOR PAIRS; METALLIC SURFACE; RESONANCE ENERGY TRANSFER; SILVER ISLAND FILMS; TIME RESOLVED MEASUREMENT; TRANSFER EFFICIENCY; WEIGHTED AVERAGES;

POLYMERASE CHAIN REACTION;

7 AMINO 3 [[[(PROPYL)AMINO]CARBONYL]METHYL] 4 METHYLCOUMARIN 6 SULFONIC ACID; COUMARIN; CYANIC ACID DERIVATIVE; DNA; FLUORESCENT DYE; N,N' (DIPROPYL)TETRAMETHYLINDOCARBOCYANINE; OLIGOMER; SILICON DIOXIDE; SILVER; SULFONIC ACID DERIVATIVE; UNCLASSIFIED DRUG;

ARTICLE; COVALENT BOND; DNA BINDING; DNA HELIX; ENERGY TRANSFER; FLUOROPHORE; HYBRIDIZATION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PRODUCTIVITY; STEADY STATE;

EID: 0037446252     PISSN: 00032697     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0003-2697(02)00710-8     Document Type: Article

References (35)

1. Wu P., Brand L. Review-resonance energy transfer. Methods and applications. Anal. Biochem. 218:1994;1-13.
2. Dos Remedios C.G., Moens P.D.J. Fluorescence resonance energy transfer spectroscopy is a reliable "ruler" for measuring structural changes in proteins. J. Struct. Biol. 115:1995;175-185.
3. Lilley D.M.J., Wilson T.J. Fluorescence resonance energy transfer as a structural tool for nucleic acids. Curr. Opin. Chem. Biol. 4:2000;507-517.
4. Walter F., Murchie A.I.H., Duckett D., Lilley D.M.J. Global structure of four-way RNA junctions studied using fluorescence resonance energy transfer. RNA. 4:1998;719-728.
5. Mitsui T., Nakano H., Yamana K. Coumarin-fluorescein pair as a new donor-acceptor set for fluorescence energy transfer study of DNA. Tetrahedron Lett. 41:2000;2605-2608.
6. Norman D.G., Grainger R.J., Uhrin D., Lilley D.M.J. Location of cyanine-3 on double-stranded DNA: Importance for fluorescence resonance energy transfer studies. Biochemistry. 39:2000;6317-6324.
7. Sueda S., Yuan J., Matsumoto K. Homogenous DNA hybridization assay by using europium luminescence energy transfer. Bioconj. Chem. 11:2000;827-831.
8. Selvin P.R., Rana T.M., Hearst J.E. Luminescence resonance energy transfer. J. Am. Chem. Soc. 116:1994;6029-6030.
9. Selvin P.R. Lanthanide-based resonance energy transfer. IEEE J. Selected Topics Quantum Electron. 2(4):1996;1077-1087.
10. Mathis G. Rare earth cryptates and homogenous fluoroimmunoassays with human sera. Clin. Chem. 39:1993;1953-1959.
11. Drexhage K.H. Interaction of light with monomolecular dye lasers. Wolf E. Progress in Optics XII. 1974;161-232 North-Holland, Amsterdam. (Chapter IV).
12. Hinds E.A. Cavity quantum electrodynamics. Adv. Atom. Mol. Opt. Phys. 28:1991;237-289.
13. Chance R.R., Prock A., Silbey R. Molecular fluorescence and energy transfer near interfaces. Adv. Chem. Phys. 37:1978;1-65.
14. Gersten J., Nitzan A. Spectroscopic properties of molecules interacting with small dielectric particles. J. Chem. Phys. 75(3):1981;1139-1152.
15. Chew H. Transition rates of atoms near spherical surfaces. J. Chem. Phys. 87(2):1987;1355-1360.
16. Weitz D.A., Garoff S. The enhancement of Raman scattering, resonance Raman scattering, and fluorescence from molecules adsorbed on a rough silver surface. J. Chem. Phys. 78:1983;5324-5338.
17. Kümmerlen J., Leitner A., Brunner H., Aussenegg F.R., Wokaun A. Enhanced dye fluorescence over silver island films: Analysis of the distance dependence. Mol. Phys. 80(5):1993;1031-1046.
18. Shalkhammer T., Aussenegg F.R., Leitner A., Brunner H., Hawa G., Lobmaier C., Pittner F. Detection of fluorophore-labeled antibodies by surface-enhanced fluorescence on metal nanoislands. SPIE. 2976:1997;129-136.
19. Mayer C., Stich N., Schalkhammer T.G.M. Surface-enhanced fluorescence biochips using industrial standard slide format and scanners. SPIE. 4252:2001;37-46.
20. Lobmaier Ch., Hawa G., Gotzinger M., Wirth M., Pittner F., Gabor F. Direct monitoring of molecular recognition processes using fluorescence enhancement at colloid-coated microplates. J. Mol. Recogn. 14:2001;215-222.
21. Lakowicz J.R. Radiative decay engineering: Biophysical and biomedical applications. Anal. Biochem. 298:2001;1-24.
22. Lakowicz J.R., Gryczynski I., Shen Y., Malicka J., Gryczynski Z. Intensified fluorescence. Photon. Spectra. 2001;96-104.
23. Lakowicz J.R., Shen Y., D'Auria S., Malicka J., Gryczynski Z., Gryczynski I. Radiative decay engineering. 2. Effects of silver island films on fluorescence intensity, lifetimes and resonance energy transfer. Anal. Biochem. 301:2002;261-277.
24. Hua X.M., Gersten J.I., Nitzan A. Theory of energy transfer between molecules near solid state particles. J. Chem. Phys. 83:1985;3650-3659.
25. Gersten J.I., Nitzan A. Accelerated energy transfer between molecules near a solid particle. Chem. Phys. Lett. 104(1):1984;31-37.
26. Ni F., Cotton T.M. Chemical procedure for preparing surface-enhanced Raman scattering active silver films. Anal. Chem. 58:1986;3159-3163.
27. Laczko G., Gryczynski I., Gryczynski Z., Wiczk W., Malak H., Lakowicz J.R. A 10-GHz frequency-domain fluorometer. Rev. Sci. Instrum. 61:1990;2331-2337.
28. Lakowicz J.R., Laczko G., Cherek H., Gratton E., Limkeman M. Analysis of fluorescence decay kinetics from variable-frequency phase shift and modulation data. Biophys. J. 46:1994;463-477.
29. Grinvald A., Haas E., Steinberg I.A. Evaluation of the distribution of distances between energy transfer donors and acceptors by fluorescence decay. Proc. Natl. Acad. Sci. USA. 69:1972;2273-2277.
30. Cheung H.C., Wang C.-K., Gryczynski I., Wiczk W., Laczko G., Johnson M.L., Lakowicz J.R. Distance distributions and anisotropy decays of troponin C and its complex with troponin 1. Biochemistry. 30:1991;5238-5247.
31. Cheung H.C. Resonance energy transfer. Lakowicz J.R. Topics in Fluorescence Spectroscopy, Vol. 2: Principles. 1991;127-176 Plenum, New York.
32. Andrew P., Barnes W.L. Forster energy transfer in an optical microcavity. Science. 290:2000;785-788.
33. Kobayashi T., Zheng Q., Sekiguchi T. Resonant dipole-dipole interaction in a cavity. Phys. Rev. A. 52:1995;2835-2846.
34. Kurizki G., Kofman A.G., Yudson V. Resonant photon exchange by atom pairs in high-Q cavities. Phys. Rev. A. 53:1996;R35-R38.
35. Agarwal G.S., Gupta S.D. Microcavity-induced modification of the dipole-dipole interaction. Phys. Rev. A. 57:1998;667-670.