DNA detection and signal amplification via an engineered allosteric enzyme

Journal of the American Chemical Society

Volumn 125, Issue 2, 2003, Pages 344-345

  Saghatelian, Alan ^a   Guckian, Kevin M ^a   Thayer, Desiree A ^a   Ghadiri, M Reza ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; DNA; ENZYME INHIBITOR; ENZYME PRECURSOR; NEUTRAL PROTEINASE; PHOSPHORAMIDIC ACID; SINGLE STRANDED DNA;

ALLOSTERISM; ARTICLE; BACILLUS CEREUS; COVALENT BOND; DNA DETERMINATION; DNA HYBRIDIZATION; DNA SEQUENCE; ENZYME ENGINEERING; ESCHERICHIA COLI; MOLECULAR MODEL; NONHUMAN; POLYMERASE CHAIN REACTION; PROTEIN DNA INTERACTION;

BACILLUS CEREUS; DNA; DNA, SINGLE-STRANDED; KINETICS; METALLOENDOPEPTIDASES; OLIGOPEPTIDES; PROTEASE INHIBITORS; SIGNAL PROCESSING, COMPUTER-ASSISTED;

EID: 0037438523     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja027885u     Document Type: Article

References (21)

1. PCR-based techniques: (a) Hacia, J. G.; Fan, J.-B.; Ryder, O.; Jin, L.; Edgemon, K.; Ghandour, G.; Mayer, R. A.; Sun, B.; Hsie, L.; Robbins, C. M.; Brody, L. C.; Wang, D.; Lander, E. S.; Lipshutz, R.; Fodor, S. P. A.; Collins, F. S. Nat. Genet. 1999, 22, 164-167.
2. (b) Kostrikis, L. G.; Tyagi, S.; Mhlanga, M. M.; Ho, D. D.; Kramer, F. R. Science 1998, 279, 1228-1229.
3. (c) Nuovo, G. J. Rapid Detect. Infect. Agents 1998, 191-206.
4. (d) Nuovo, G. J. Methods Mol. Biol. 2000, 123, 217-238.
5. (e) Post, J. C.; Ehrlich, G. D. JAMA 2000, 283, 1544-1546.
6. PCR-independent techniques: (a) Elghanian, R.; Storhoff, J. J.; Mucic, R. C.; Letsinger, R. L.; Mirkin, C. A. Science 1997, 277, 1078-1081.
7. (b) Taton, T. A.; Mirkin, C. A.; Letsinger, R. L. Science 2000, 289, 1757-1760.
8. (c) Player, A. N.; Shen, L. P.; Kenny, D.; Antao, V. P.; Kolberg, J. A. J. Histochem. Cytochem. 2001, 49, 603-611.
9. (d) Stojanovic, M. N.; De Prada, P.; Landry, D. W. ChemBioChem 2001, 2, 411-415.
10. (e) Umek, R. M.; Lin, S. W.; Vielmetter, J.; Terbrueggen, R. H.; Irvine, B.; Yu, C. J.; Kayyem, J. F.; Yowanto, H.; Blackburn, G. F.; Farkas, D. H.; Chen, Y.-P. J. Mol. Diagn. 2001, 3, 74-84.
11. For a recent review and comparison of techniques combining nucleic acid amplification and detection, see: Schweitzer, B.; Kingsmore, S. Curr. Opin. Biotechnol. 2001, 12, 21-27.
12. Kobe, B.; Kemp, B. E. Nature 1999, 402, 373-376.
13. Feder, J.; Keay, L.; Garrett, L. R.; Cirulis, N.; Moseley, M. H.; Wildi, B. S. Biochim. Biophys. Acta 1971, 251, 74-78.
14. (a) Matthews, B. W. Acc. Chem. Res. 1988, 21, 333-340.
15. (b) Komiyama, T.; Suda, H.; Aoyagi, T.; Takeuchi, T.; Umezawa, H. Arch. Biochem. Biophys. 1975, 171, 727-731.
16. Stark, W.; Pauptit, R. A.; Wilson, K. S.; Jansonius, J. N. Eur. J. Biochem. 1992, 207, 781-791.
17. Wetmore, D. R.; Wong, S. L.; Roche, R. S. Mol. Microbiol. 1992, 6, 1593-1604.
18. Ho, S. N.; Hunt, H. D.; Horton, R. M.; Pullen, J. K.; Pease, L. R. Gene 1989, 77, 51-59.
19. Matayoshi, E. D.; Wang, G. T.; Krafft, G. A.; Erickson, J. Science 1990, 247, 954-958.
20. The sequence of the IDE tether = AGTTGATTTGTGCTTCAGTGTGCT and the complement = AGCACACTGAAGCACAAATCAACT and nonspecific = AGTGGAGATGACAGCTACTCGTGC.
21. Gryaznov, S.; Chen, J. K. J. Am. Chem. Soc. 1994, 116, 3143-3144.