-
1
-
-
0030801002
-
Gapped BLAST and PSIBLAST: A new generation of protein database search programs
-
Altschul,S.F., Madden,T.L., Schäffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0033954256
-
The protein data bank
-
Berman,H.M., Westbrook,J., Feng,Z., Gilliland,G., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.E. (2000) The protein data bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
3
-
-
0035487690
-
A tour of structural genomics
-
Brenner,S.E. (2001) A tour of structural genomics. Nat. Rev. Genet., 2, 801-809.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 801-809
-
-
Brenner, S.E.1
-
4
-
-
0001547102
-
A protein structure comparison methodology
-
Brown,N.P., Orengo,C.A. and Taylor,W.R. (1996) A protein structure comparison methodology. Computers Chem., 20, 359-380.
-
(1996)
Computers Chem.
, vol.20
, pp. 359-380
-
-
Brown, N.P.1
Orengo, C.A.2
Taylor, W.R.3
-
5
-
-
0030334647
-
Optimum superimposition of protein structures: Ambiguities and implications
-
Feng,Z-K. and Sipple,M.J. (1996) Optimum superimposition of protein structures: ambiguities and implications. Fold. Des., 1, 123-132.
-
(1996)
Fold. Des.
, vol.1
, pp. 123-132
-
-
Feng, Z.-K.1
Sipple, M.J.2
-
6
-
-
0030310317
-
Assessing the performance of fold recognition methods by means of a comprehensive benchmark
-
Hunter,L. and Klein,T. (eds), Proceedings of the 1st Pacific Symposium on Biocomputing. World Scientific Publishing Company, Singapore
-
Fischer,D., Eloffson,A., Rice,D. and Eisenberg,D. (1996) Assessing the performance of fold recognition methods by means of a comprehensive benchmark. In Hunter,L. and Klein,T. (eds), Proceedings of the 1st Pacific Symposium on Biocomputing. World Scientific Publishing Company, Singapore, pp. 300-318.
-
(1996)
, pp. 300-318
-
-
Fischer, D.1
Eloffson, A.2
Rice, D.3
Eisenberg, D.4
-
7
-
-
0031938039
-
Comprehensive assessment of automatic structural alignment against a manual standard, the SCOP classification of proteins
-
Gerstein,M. and Levitt,M. (1998) Comprehensive assessment of automatic structural alignment against a manual standard, the SCOP classification of proteins. Protein Sci., 7, 445-456.
-
(1998)
Protein Sci.
, vol.7
, pp. 445-456
-
-
Gerstein, M.1
Levitt, M.2
-
8
-
-
0029936121
-
Surprising similarities in structure comparison
-
Gibrat,J.-F., Madej,T. and Bryant,S.H. (1996) Surprising similarities in structure comparison. Curr. Opin. Struct. Biol., 6, 377-385.
-
(1996)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 377-385
-
-
Gibrat, J.-F.1
Madej, T.2
Bryant, S.H.3
-
9
-
-
0029982530
-
The structural alignment between two proteins: Is there a unique answer?
-
Godzik,A. (1996) The structural alignment between two proteins: is there a unique answer? Protein Sci., 5, 1325-1338.
-
(1996)
Protein Sci.
, vol.5
, pp. 1325-1338
-
-
Godzik, A.1
-
10
-
-
0027991446
-
The FSSP database of structurally aligned protein fold families
-
Holm,L. and Sander,C. (1994) The FSSP database of structurally aligned protein fold families. Nucleic Acids Res., 22, 3600-3609.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3600-3609
-
-
Holm, L.1
Sander, C.2
-
11
-
-
0028871926
-
Dali: A network tool for protein structure comparison
-
Holm,L. and Sander,C. (1995) Dali: a network tool for protein structure comparison. Trends Biochem. Sci., 20, 478-480.
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 478-480
-
-
Holm, L.1
Sander, C.2
-
12
-
-
0029785147
-
Mapping the protein universe
-
Holm,L. and Sander,C. (1996) Mapping the protein universe. Science, 273, 595-602.
-
(1996)
Science
, vol.273
, pp. 595-602
-
-
Holm, L.1
Sander, C.2
-
13
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch,W. and Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
14
-
-
0035367071
-
Protein structure similarities
-
Koehl,P. (2001) Protein structure similarities. Curr. Opin. Struct. Biol., 11, 348-353.
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 348-353
-
-
Koehl, P.1
-
15
-
-
0034495586
-
ProSup: A refined tool for protein structure alignment
-
Lackner,P., Koppensteiner,W.A., Sipple,M.J. and Domingues,F.S. (2000) ProSup: a refined tool for protein structure alignment. Protein Eng., 13, 745-752.
-
(2000)
Protein Eng.
, vol.13
, pp. 745-752
-
-
Lackner, P.1
Koppensteiner, W.A.2
Sipple, M.J.3
Domingues, F.S.4
-
16
-
-
0028015988
-
The protein threading problem with sequence amino acid interaction preferences is NP-complete
-
Lathrop,R.H. (1994) The protein threading problem with sequence amino acid interaction preferences is NP-complete. Protein Eng., 7, 1059-1068.
-
(1994)
Protein Eng.
, vol.7
, pp. 1059-1068
-
-
Lathrop, R.H.1
-
17
-
-
0003860680
-
Protein Architecture, a Practical Approach
-
Oxford University Press
-
Lesk,A.M. (1991) Protein Architecture, a Practical Approach. Oxford University Press, pp. 129-160.
-
(1991)
, pp. 129-160
-
-
Lesk, A.M.1
-
18
-
-
0032568649
-
A unified statistical framework for sequence comparison and structure comparison
-
Levitt,M. and Gerstein,M. (1998) A unified statistical framework for sequence comparison and structure comparison. Proc. Natl Acad. Sci. USA, 95, 5913-5920.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 5913-5920
-
-
Levitt, M.1
Gerstein, M.2
-
19
-
-
0028838717
-
Threading a database of protein cores
-
Madej,T., Gibrat,J.-F. and Bryant,S.H. (1995) Threading a database of protein cores. Proteins: Struct. Funct. Genet., 23, 356-369.
-
(1995)
Proteins: Struct. Funct. Genet.
, vol.23
, pp. 356-369
-
-
Madej, T.1
Gibrat, J.-F.2
Bryant, S.H.3
-
20
-
-
0028319318
-
Classification of protein folds
-
Orengo,C. (1994) Classification of protein folds. Curr. Opin. Struct. Biol, 4, 429-440.
-
(1994)
Curr. Opin. Struct. Biol.
, vol.4
, pp. 429-440
-
-
Orengo, C.1
-
21
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov,I.N. and Bourne,P.E. (1998) Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng., 11, 739-747.
-
(1998)
Protein Eng.
, vol.11
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
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