NMR structure of the DNA-binding domain of the cell cycle protein Mbp1 from Saccharomyces cerevisiae

Biochemistry

Volumn 42, Issue 5, 2003, Pages 1266-1273

  Nair, Margie ^a   McIntosh, Pauline B ^a   Frenkiel, Thomas A ^a   Kelly, Geoff ^a   Taylor, Ian A ^a   Smerdon, Stephen J ^a   Lane, Andrew N ^a,b  

^a NATIONAL INSTITUTE FOR MEDICAL RESEARCH   (United Kingdom)

^b UNIVERSITY OF LOUISVILLE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANNEALING; CELLS; COMPUTER SIMULATION; DIMERIZATION; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROTEINS; TOPOLOGY; X RAY ANALYSIS;

HETERODIMERIZATION DOMAINS;

DNA;

ANKYRIN; CELL CYCLE PROTEIN; HELIX LOOP HELIX PROTEIN; MBP1 PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

ALPHA HELIX; ARTICLE; BETA SHEET; CELL CYCLE; CRYSTAL STRUCTURE; DNA BINDING; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; PROTEIN DOMAIN; PROTEIN STRUCTURE; SACCHAROMYCES CEREVISIAE; TRANSCRIPTION REGULATION; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; CELL CYCLE PROTEINS; COMPUTER SIMULATION; CRYSTALLOGRAPHY, X-RAY; DNA-BINDING PROTEINS; ELECTROSTATICS; HELIX-TURN-HELIX MOTIFS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PEPTIDE FRAGMENTS; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SACCHAROMYCES CEREVISIAE PROTEINS; SOLUTIONS; THERMODYNAMICS; TRANSCRIPTION FACTORS;

SACCHAROMYCES CEREVISIAE;

EID: 0037431960     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0205247     Document Type: Article

References (39)

1. Koch, C., Moll, T., Neuberg, M., Ahorn, H., and Nasmyth, K. (1993) Science 261, 1551-1557.
2. Primig, M., Sockanathan, S., Auer, H., and Nasmyth, K. (1992) Nature 358, 593-597.
3. Lowndes, N. F., Johnson, A. L., Breeden, L., and Johnston, L. H. (1992) Nature 357, 505-508.
4. McIntosh, E. M., Atkinson, T., Storms, R. K., and Smith, M. (1991) Mol. Cell. Biol. 11, 329-337.
5. Taylor, I. A., McIntosh, P. B., Pala, P., Treiber, M. K., Howell, S., Lane, A. N., and Smerdon, S. J. (2000) Biochemistry 39, 3943-3954.
6. Xu, R. M., Koch, C., Liu, Y., Horton, J. R., Knapp, D., Nasmyth, K., and Cheng, X. (1997) Structure 5, 349-358.
7. Taylor, I. A., Treiber, M. K., Olivi, L., and Smerdon, S. J. (1997) J. Mol. Biol. 272, 1-8.
8. McIntosh, P. B., Taylor, I. A., Frenkiel, T. A., Smerdon, S. J., and Lane, A. N. (2000) J. Biomol. NMR 16, 183-196.
9. Furui, J., Uegaki, K., Yamazaki, T., Shirakawa, M., Swindells, M. B., Harada, H., Taniguchi, T., and Kyogoku, Y. (1998) Structure 15, 491-500.
10. Jin, C., Marsden, I., Chen, X., and Liao, X. (1998) Biochemistry 37, 6179-6187.
11. Jin, C., and Liao, X. (1999) J. Mol. Biol. 292, 641-651.
12. Taylor, I. A, and Smerdon, S. J. (1997) Proteins 27, 325-327.
13. McIntosh, P. B., Taylor, I. A., Smerdon, S. J., Frenkiel, T. A., and Lane, A. N. (1999) J. Biomol. NMR 13, 397-398.
14. Kanelis, V., Donaldson, L., Muhandiram, D. R., Rotin, D., Forman-Kay, J. D., and Kay, L. E. (2000) J. Biomol. NMR 16, 253-259.
15. Kay, L. E., Ikura, M., Tschudin, R., and Bax, A. (1990) J. Magn. Reson. 89, 496-514.
16. Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) J. Biomol. NMR 6, 277-293.
17. Marion, D., Driscoll, P. C., Kay, L. E., Wingfield, P. T., Bax, A., Gronenborn, A. M., and Clore, G. M. (1989) Biochemistry 28, 6150-6156.
18. Bartels, C. H., Xia, T.-H., Billeter, M., Güntert, P., and Wüthrich, K. (1995) J. Biomol. NMR 5, 1-10.
19. Guntert, P., Mumenthaler, C., and Wuthrich, K. (1997) J. Mol. Biol. 273, 283-298.
20. McDonald, I., Naylor, D., Jones, D., and Thornton, J. (1993) Hydrogen Bond Calculator v3.15.
21. Hwang, T. L., van Zijl, P. C., and Mori, S. (1998) J. Biomol. NMR 11, 221-226.
22. Vuister, G. W., Delaglio, F., and Bax A. (1993) J. Biomol. NMR 3, 67-80.
23. Cornilescu, G., Delaglio, F., and Bax, A. (1999) J. Biomol. NMR 13, 289-302.
24. Ruckert, M., and Otting, G. (2000) J. Am. Chem. Soc. 122, 7793-7797.
25. Tjandra, N., Grzesiek, S., and Bax, A. (1996) J. Am. Chem. Soc. 118, 6264-6272.
26. Warren, J. J., and Moore, P. B. (2001) J. Magn. Reson. 149, 271-275.
27. Clore, G. M., Gronenborn, A. M., and Bax, A. (1998) J. Magn. Reson. 133, 216-221.
28. Brunger, A. T. (1988) in X-PLOR Version 3.1. A system for X-ray crystallography and NMR, Yale University Press, New Haven, CT.
29. Koradi, R., Billeter, M., and Wuthrich, K. (1996) J. Mol. Graphics 14, 51-55.
30. Nicholls, A., Bharadwaj, R., and Honig, B. (1993) Biophys. J. 64, a166-a166.
31. Laskowski, R. A., Rullmann, J. A., MacArthur, M. W., Kaptein, R., and Thornton, J. M. (1996) J. Biomol. NMR 8, 477-486.
32. Kay, L. E., Ikura, M., Tschudin, R., and Bax, A. (1990) J. Magn. Reson. 89, 496-514.
33. Grzesiek, S., and Bax, A. (1992) J. Magn. Reson. 99, 201-207.
34. Wishart, D. S., Sykes, B. D., and Richards, F. M. (1992) Biochemistry 31, 1647-1651.
35. Gajiwala, K. S., and Burley, S. K. (2000) Curr. Opin. Struct. Biol. 10, 110-116.
36. Huffman, J. L., and Brennan, R. G. (2002) Curr. Opin. Struct. Biol. 12, 98-106.
37. Lane, A. N., Kelly, G., Ramos, A., and Frenkiel, T. A. (2001) J. Biomol. NMR 21, 127-139.
38. Kabsch, W., and Sander, C. (1983) Biopolymers 22, 2577-2637.
39. Frishman, D., and Argos, P. (1995) Proteins 23, 566-579.