Sequence specific collective motions in a winged helix DNA binding domain detected by 15N relaxation NMR

Biochemistry

Volumn 37, Issue 17, 1998, Pages 6179-6187

  Jin, Changwen ^a   Marsden, Ian ^a,b   Chen, Xiaoqun ^a   Liao, Xiubei ^a  

^a UNIVERSITY OF ILLINOIS   (United States)

^b ABBOTT LABORATORIES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR;

ARTICLE; BINDING SITE; DNA HELIX; DNA SEQUENCE; MOLECULAR INTERACTION; MOLECULAR RECOGNITION; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN DNA BINDING;

ANIMALS; DNA-BINDING PROTEINS; FORKHEAD TRANSCRIPTION FACTORS; HELIX-TURN-HELIX MOTIFS; MODELS, MOLECULAR; NITROGEN ISOTOPES; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; RATS; REPRESSOR PROTEINS; TRANSCRIPTION FACTORS;

EID: 0032574757     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi980031v     Document Type: Article

References (69)

1. Pabo, C. O., and Sauer, R. T. (1992) Annu. Rev. Biochem. 61, 1053-1095.
2. Harrison, S. C. (1991) Nature 353, 715-719.
3. Raumann, B. E., Brown, B. M., and Sauer, R. T. (1994) Curr. Opin. Struct. Biol. 4, 36-43.
4. Kaufmann, E., and Knöchel, W. (1996) Mech. Dev. 57, 3-20.
5. Lai, E., Prezioso, V. R., Smith, E., Litvin, O., Costa, R. H., and Darnell, J. E., Jr. (1990) Genes Dev. 4, 1427-1436.
6. Weigel, D., and Jäckle, H. (1990) Cell 63, 455-456.
7. Grossniklaus, U., Pearson, R. K., and Gehring, W. J. (1992) Genes Dev. 6, 1030-1051.
8. Zhu, G., Muller, E. G. D., Amacher, S. L., Northrop, J. L., and Davis, T. N. (1993) Mol. Cell. Biol. 13, 1779-1787.
9. Li, C., Lai, C., Sigman, D. S., and Graynor, R. B. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 7739-7743.
10. Tao, W., and Lai, E. (1992) Neuron 8, 957-966.
11. Clevidence, D. E., Overdier, D. G., Tao, W., Qian, X., Pani, L., Lai, E., and Costa, R. H. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 3948-3952.
12. Avraham, K. B., Fletcher, C., Overdier, D. G., Clevidence, D. E., Lai, E., Costa, R. H., Jenkins, N. A., and Copeland, N. G. (1995) Genomics 25, 388-393.
13. Bassel-duby, R., Hernandez, M. D., Yang, Q., Rochelle, J. M., Sledin, M. F., and Williams, R. S. (1994) Mol. Cell. Biol. 14, 4596-4605.
14. Dirkson, M. L., and Jamrich, M. (1992) Genes Dev. 6, 599-608.
15. Miller, L. M., Gallegos, M. E., Morisseau, B. A., and Kim, S. K. (1993) Genes Dev. 7, 933-947.
16. Pierrou, S., Hellqvist, M., Samuelsson, L., EnerbÇck, S., and Carlsson, P. (1994) EMBO J. 13, 5002-5012.
17. Costa, R. H., Grayson, D. R., and Darnell, J. E., Jr. (1989) Mol. Cell. Biol. 9, 1415-1425.
18. Costa, R. H., and Grayson, D. R. (1991) Nucleic Acids Res. 19, 4139-4145.
19. Liu, E., DiPersio, C. M., and Zaret, K. S. (1991) Mol. Cell. Biol. 11, 773-784.
20. Ang, S. L., and Rossant, J. (1994) Cell 78, 561-574.
21. Weinstein, D. C., Ruiz i Altaba, A., Chen, W. S., Hoodless, P., Prezioso, V. R., Jessell, R. M., and Darnell, J. E., Jr. (1994) Cell 78, 575-588.
22. Ye, H., Kelly, T. F., Samadani, U., Lim, L., Rubio, S., Overdier, D. G., Roebuck, K. A., and Costa, R. H. (1997) Mol. Cell. Biol. 17, 1626-1641.
23. Clark, K. L., Halay, E. D., Lai, E., and Burley, S. K. (1993) Nature 364, 412-420.
24. Marsden, I., Chen, Y., Jin, C., and Liao, X. (1997) Biochemistry 36, 13248-13255.
25. Bravieri, R., Shiyanova, T., Chen, T. H., Overdier, D., and Liao, X. (1997) Nucleic Acids Res. 25, 2888-2896.
26. Sutton, J., Costa, R., Klug, M., Field, L., Xu, D., Largaespada, D. A., Fletcher, C. F., Jenkins, N. A., Copeland, N. G., Klemsz, M., and Hromas, R. (1996) J. Biol. Chem. 271, 23126-23133.
27. Overdier, D. G., Porcella, A., and Costa, R. H. (1994) Mol. Cell. Biol. 14, 2755-2766.
28. Garner, M., and Rezin, A. (1981) Nucleic Acids Res. 9, 6505-6525.
29. Farrow, N. A., Muhandiram, R., Singer, A. U., Pascal, S. M., Kay, C. M., Gish, G., Shoelson, S. E., Pawson, T., Forman-Kay, J. D., and Kay, L. E. (1994) Biochemistry 33, 5984-6003.
30. Sklenar, V., Torchia, D. A., and Bax, A. (1987) J. Magn. Reson. 73, 375-379.
31. Boyd, J., Hummel, U., and Campbell, I. D. (1990) FEBS Lett. 775, 477-482.
32. Palmer, A. G., Skelton, N. J., Chazin, W. J., Wright, P. E., and Rance M. (1992) Mol. Phys. 75, 699-711.
33. Kay, L. E., Ikura, M., Tschudin, R., and Bax, A. (1990) J. Magn. Reson. 89, 496-514.
34. Markley, J. L., Horsley, W. J., and Klein, M. P. (1971) J. Chem. Phys. 55, 3604-3605.
35. Palmer, A. G., Wright, P. E., and Rance, M. (1991) J. Am. Chem. Soc. 113, 203-216.
36. Abragam, A. (1961) Principles of Nuclear Magnetism, Clarendon Press, Oxford, U.K.
37. Bloom, M., Reevers, L. W., and Wells, E. J. (1965) J. Chem. Phys. 42, 1615-1642.
38. Hiyama, Y., Niu, C., Silverton, J. V., Bavoso, A., and Torchia, D. A. (1988) J. Am. Chem. Soc. 110, 2378-2383.
39. Lipari, G., and Szabo, A. (1982) J. Am. Chem. Soc. 104, 4546-4558.
40. Lipari, G., and Szabo, A. (1982) J. Am. Chem. Soc. 104, 4559-4570.
41. Clore, G. M., Driscoll, P. C., Wingfield, P. T., and Gronenborn, A. M. (1990) Biochemistry 29, 7387-7401.
42. Clore, G. M., Szabo, A., Bax, A., Kay, L. E., Driscoll, P. C., and Gronenborn, A. M. (1990) J. Am. Chem. Soc. 112, 4989-4991.
43. Key, L. E., Torchia, D. A., and Bax, A. (1989) Biochemistry 28, 8972-8979.
44. Barbato, G., Ikura, M., Kay, L. E., Pastor, R. W., and Bax, A. (1992) Biochemistry 31, 5269-5278.
45. Stone, M. J., Fairbrother, W. J., Palmer, A. G., III, Reizer, J. J., Saier, M. H., Jr., and Wright, P. E. (1992) Biochemistry 31, 4394-4406.
46. Marsden, I., Jin, C., and Liao, X. (1998) J. Mol. Biol. (in press).
47. Günter, P., Braun, W., and Wüthrich K. (1991) J. Mol. Biol. 217, 517-530.
48. Palmer, A. G., III (1993) Curr. Opin. Biotechnol. 4, 385-391.
49. Harrison, S. C., and Aggarwal, A. K. (1990) Annu. Rev. Biochem. 59, 933-969.
50. Werner, M. H., Gronenborn, A. M., and Clore, G. M. (1996) Science 271, 778-784.
51. Schultz, S. C., Shields, G. C., and Steitz, T. A. (1991) Science 253, 1001-1007.
52. Rosenberg, J. M. (1991) Curr. Opin. Struct. Biol. 1, 104-132.
53. Winkler, F. K. (1993) EMBO J. 12, 1781-1795.
54. Weber, I. T., and Steiz, T. A. (1987) J. Mol. Biol. 198, 311-326.
55. Brennan, R. G. (1991) Curr. Opin. Struct. Biol. 1, 80-104.
56. Spolar, R., and Record, T., Jr. (1994) Science 263, 777-784.
57. El-Baradi, T., and Pieler, T. (1991) Mech. Dev. 35, 155-169.
58. Liao, X., Clemens, K. R., Tennant, L., Wright, P. E., and Gottesfeld, J. M. (1992) J. Mol. Biol. 223, 857-871.
59. Bruschweiler, R., Liao, X., and Wright, P. E. (1995) Science 268, 886-889.
60. Foster, M. P., Wuttke, D. S., Radhakrishnan, I., Case, D. A., Gottesfeld, J. M., and Wright, P. E. (1997) Nat. Struct. Biol. 4, 605-608.
61. Werner, M. H., Huth, J. R., Groneenborn, A. M., and Clore, G. M. (1995) Cell 2, 705-714.
62. Love, J. J., Li, X., Case, D. A., Giese, K., Grosschedl, R., and Wright, P. E. (1995) Nature 376, 791-795.
63. Hardman, C. H., Broadhurst, W., Raine, A. R. C., Grasser, K. D., Thomas, H. O., and Laue, E. D. (1995) Biochemistry 34, 16596-16607.
64. Bianchi, M. E., Beltrame, M., and Paonessa, G. (1989) Science 243, 1056-1059.
65. Pil, P. M., and Lippard, S. J. (1992) Science 256, 234-237.
66. Locker, D., Decoville, M., Maurizot, J. C., Bianchi, M. E., and Lend, M. (1995) J. Mol. Biol. 246, 243-247.
67. Wolfe, S. A., Ferentz, A. E., Grantcharova, V., Churchill, M. E. A., and Verdine, G. L. (1995) Chem. Biol. 2, 213-221.
68. Mandel, A. M., Akke, M., and Palmer, A. G., III (1996) Biochemistry 35, 16009-16023.
69. Cantor, C., and Schimmel, P. R. (1980) Biophysical Chemistry, p 550, Academic Press, New York.