SCOPUS 정보 검색 플랫폼

Nucleic Acids Research

Volumn 30, Issue 14, 2002, Pages 3181-3191

A comparative genomic method for computational identification of prokaryotic translation initiation sites

(3) Walker, Megon a Pavlovic, Vladimir a Kasif, Simon a,b

a BOSTON UNIVERSITY (United States)

b Boston University (United States)

Author keywords

[No Author keywords available]

Indexed keywords

SPACER DNA; TRINUCLEOTIDE;

ACCURACY; AMINO ACID SUBSTITUTION; ARTICLE; CONTROLLED STUDY; ESCHERICHIA COLI; GENE FREQUENCY; GENE SEQUENCE; GENE STRUCTURE; GENETIC CODE; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PRIORITY JOURNAL; PROBABILITY; PROKARYOTE; PROMOTER REGION; PYROCOCCUS; RNA TRANSLATION; SALMONELLA TYPHIMURIUM; SPECIES DIFFERENCE; TRANSLATION INITIATION; VALIDATION PROCESS;

ESCHERICHIA COLI; ESCHERICHIA COLI K12; NEGIBACTERIA; PROKARYOTA; PYROCOCCUS; SALMONELLA; SALMONELLA TYPHIMURIUM;

EID: 0037100663 PISSN: 03051048 EISSN: None Source Type: Journal
DOI: 10.1093/nar/gkf423 Document Type: Article

Times cited : (12)

References (22)

1
- 0033861549
- Human and mouse gene structure: Comparative analysis and application to exon prediction
- (2000) Genome Res , vol.10 , pp. 950-958
- Batzoglou, S.¹ Pachter, L.² Mesirov, J.³ Berger, B.⁴ Lander, E.⁵

2
- 0033384536
- Finding prokaryotic genes by the 'frame-by-frame' algorithm: Targeting gene starts and overlapping genes
- (1999) Bioinformatics , vol.15 , pp. 874-886
- Shmatkov, A.¹ Melikyan, A.² Chernousko, F.³ Borodovsky, M.⁴

3
- 0030801002
- Gapped BLAST and PSI-BLAST: A new generation of protein database search algorithms
- (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
- Altschul, S.¹ Madden, T.² Schaffer, A.³ Zhang, J.⁴ Zhang, Z.⁵ Miller, W.⁶ Lipman, D.⁷

4
- 0032518163
- Microbial gene identification using interpolated Markov models
- (1998) Nucleic Acids Res , vol.26 , pp. 544-548
- Salzberg, S.¹ Delcher, A.² Kasif, S.³ White, O.⁴

5
- 0000241874
- GeneMark: Parallel gene recognition for both DNA strands
- (1993) Comput. Chem , vol.17 , pp. 123-153
- Borodovsky, M.¹ McIninch, J.²

6
- 0035875343
- GeneMarkS: A self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
- (2001) Nucleic Acids Res , vol.29 , pp. 2607-2618
- Besemer, J.¹ Lomsadze, A.² Borodovsky, M.³

7
- 0027321823
- Identification and characterization of Escherichia coli ribosomal binding sites by free energy computation
- (1993) Nucleic Acids Res , vol.21 , pp. 4019-4023
- Schurr, T.¹ Nadir, E.² Margalit, H.³

8
- 0033198829
- Bacterial start site prediction
- (1999) Nucleic Acids Res , vol.27 , pp. 3577-3582
- Hannenhalli, S.¹ Hayes, W.² Hatzigeorgiou, A.³ Fickett, J.⁴

9
- 0035973555
- A novel bacterial gene-finding system with improved accuracy in locating start codons
- (2001) DNA Res , vol.8 , pp. 97-106
- Yada, T.¹ Yasushi, J.² Toshihisa, J.³ Nakai, K.⁴

10
- 0036137327
- A probabilistic method for identifying start codons in bacterial genomes
- (2001) Bioinformatics , vol.17 , pp. 1123-1130
- Suzek, B.¹ Ermolaeva, M.² Schreiber, M.³ Salzberg, S.⁴

11
- 0032483028
- Evolutionary parameters of the transcribed mammalian genome: An analysis of 2,820 orthologous rodent and human sequences
- (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 9407-9412
- Makalowski, W.¹ Boguski, M.²

12
- 0032579989
- Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3
- (1998) DNA Res , vol.5 , pp. 55-76
- Kawarabayasi, Y.¹ Sawada, M.² Horikawa, H.³ Haikawa, Y.⁴ Hino, Y.⁵ Yamamoto, S.⁶ Sekine, M.⁷ Baba, S.⁸ Kosugi, H.⁹ Hosoyama, A.¹⁰ Nagai, Y.¹¹ Sakai, M.¹² Ogura, K.¹³ Otuka, R.¹⁴ Nakazawa, H.¹⁵ Takamiya, M.¹⁶ Ohfuku, Y.¹⁷ Funahashi, T.¹⁸ Tanaka, N.¹⁹ Oguchi, A.²⁰ more..

13
- 0034821951
- Genome evolution at the genus level: Comparison of three complete genomes of hyperthermophilic archaea
- (2001) Genome Res , vol.11 , pp. 981-993
- Lecompte, O.¹ Ripp, R.² Puzos-Barbe, V.³ Duprat, S.⁴ Heilig, R.⁵ Dietrich, J.⁶ Thierry, J.⁷ Poch, O.⁸

14
- 0033971754
- EcoGene: A genome sequence database for Escherichia coli K-12
- (2000) Nucleic Acids Res , vol.28 , pp. 60-64
- Rudd, K.¹

15
- 0033153375
- Alignment of whole genomes
- (1999) Nucleic Acids Res , vol.11 , pp. 2369-2376
- Delcher, A.¹ Kasif, S.² Fleischmann, R.³ Peterson, J.⁴ White, O.⁵ Salzberg, S.⁶

16
- 0036112213
- Applications of generalized pair hidden Markov models to alignment and gene finding problems
- (2002) J. Comput. Biol , vol.9 , pp. 389-399
- Pachter, L.¹ Alexandersson, M.² Cawley, S.³

17
- 0003516147
- Cambridge University Press, Cambridge, UK
- (1998) Biological Sequence Analysis
- Durbin, R.¹ Eddy, S.² Krogh, A.³ Mitchison, G.⁴

18
- 0035002015
- Computational inference of homologous gene structures in the human genome
- (2001) Genome Res , vol.11 , pp. 803-816
- Yeh, R.-F.¹ Lim, L.P.² Burge, C.B.³

19
- 0036173326
- A Bayesian framework for combining gene predictions
- (2002) Bioinformatics , vol.18 , pp. 19-27
- Pavlovic, V.¹ Garg, A.² Kasif, S.³

20
- 0022507362
- Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
- (1986) Mol. Biol. Evol , vol.3 , pp. 418-426
- Nei, M.¹ Gojobori, T.²

21
- 0028286120
- Variance and covariances of the numbers of synonymous and nonsynonymous substitutions per site
- (1994) Mol. Biol. Evol , vol.11 , pp. 613-619
- Ota, T.¹ Nei, M.²

22
- 0028168856
- A codon-based model of nucleotide substitution for protein-coding DNA sequences
- (1994) Mol. Biol. Evol , vol.45 , pp. 725-736
- Goldman, N.¹ Yang, Z.²

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.