-
2
-
-
0030855248
-
The structure of L-aspartate ammonia-lyase from Escherichia coli
-
Shi W., Dunbar J., Jayasekera M.M.K., Viola R.E., Farber G.K. The structure of L-aspartate ammonia-lyase from Escherichia coli. Biochemistry. 36:1997;9136-9144.
-
(1997)
Biochemistry
, vol.36
, pp. 9136-9144
-
-
Shi, W.1
Dunbar, J.2
Jayasekera, M.M.K.3
Viola, R.E.4
Farber, G.K.5
-
3
-
-
0015902723
-
Studies on aspartase. I. Purification and molecular properties of aspartase from Escherichia coli
-
Suzuki S., Yamaguchi J., Tokushige M. Studies on aspartase. I. Purification and molecular properties of aspartase from Escherichia coli. Biochim. Biophys. Acta. 321:1973;369-381.
-
(1973)
Biochim. Biophys. Acta
, vol.321
, pp. 369-381
-
-
Suzuki, S.1
Yamaguchi, J.2
Tokushige, M.3
-
4
-
-
0025903701
-
Kinetic studies of L-aspartase from Escherichia coli: PH-dependent activity changes
-
Karsten W.E., Viola R.E. Kinetic studies of L-aspartase from Escherichia coli: pH-dependent activity changes. Arch. Biochem. Biophys. 287:1991;60-67.
-
(1991)
Arch. Biochem. Biophys.
, vol.287
, pp. 60-67
-
-
Karsten, W.E.1
Viola, R.E.2
-
5
-
-
0022549346
-
Kinetic studies of L-aspartase from Escherichia coli: Substrate activation
-
Karsten W.E., Gates R.B., Viola R.E. Kinetic studies of L-aspartase from Escherichia coli: substrate activation. Biochemistry. 25:1986;1299-1303.
-
(1986)
Biochemistry
, vol.25
, pp. 1299-1303
-
-
Karsten, W.E.1
Gates, R.B.2
Viola, R.E.3
-
6
-
-
0021875577
-
L-Aspartate-induced activation of aspartase
-
Ida N., Tokushige M. L-Aspartate-induced activation of aspartase. J. Biochem. 98:1985;35-39.
-
(1985)
J. Biochem.
, vol.98
, pp. 35-39
-
-
Ida, N.1
Tokushige, M.2
-
8
-
-
0022474612
-
Structural and functional relationships between fumarase and aspartase. Nucleotide sequences of the fumarase (fumC) and aspartase (aspA) genes of Escherichia coli K12
-
Woods S.A., Miles J.S., Roberts R.E., Guest J.R. Structural and functional relationships between fumarase and aspartase. Nucleotide sequences of the fumarase (fumC) and aspartase (aspA) genes of Escherichia coli K12. Biochem. J. 237:1986;547-557.
-
(1986)
Biochem. J.
, vol.237
, pp. 547-557
-
-
Woods, S.A.1
Miles, J.S.2
Roberts, R.E.3
Guest, J.R.4
-
9
-
-
0000127854
-
Sequence homologies between argininosuccinase, aspartase and fumarase: A family of structurally-related enzymes
-
Woods S.A., Miles J.S., Guest J.R. Sequence homologies between argininosuccinase, aspartase and fumarase: a family of structurally-related enzymes. FEMS Microbiol. Letters. 51:1988;181-186.
-
(1988)
FEMS Microbiol. Letters
, vol.51
, pp. 181-186
-
-
Woods, S.A.1
Miles, J.S.2
Guest, J.R.3
-
10
-
-
0028198853
-
Mutagenic investigation of conserved functional amino acids in Escherichia coli L-aspartase
-
Saribas A.S., Schindler J.F., Viola R.E. Mutagenic investigation of conserved functional amino acids in Escherichia coli L-aspartase. J. Biol. Chem. 269:1994;6313-6319.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 6313-6319
-
-
Saribas, A.S.1
Schindler, J.F.2
Viola, R.E.3
-
11
-
-
0030877622
-
Evaluation of functionally important amino acids in L-aspartate ammonia-lyase from Escherichia coli
-
Jayasekera M.M.K., Shi W., Farber G.K., Viola R.E. Evaluation of functionally important amino acids in L-aspartate ammonia-lyase from Escherichia coli. Biochemistry. 36:1997;9145-9150.
-
(1997)
Biochemistry
, vol.36
, pp. 9145-9150
-
-
Jayasekera, M.M.K.1
Shi, W.2
Farber, G.K.3
Viola, R.E.4
-
12
-
-
0016802754
-
Studies on aspartase II. Role of sulfhydryl groups in aspartase from Escherichia coli
-
Mizuta K., Tokushige M. Studies on aspartase II. Role of sulfhydryl groups in aspartase from Escherichia coli. Biochim. Biophys. Acta. 403:1975;221-231.
-
(1975)
Biochim. Biophys. Acta
, vol.403
, pp. 221-231
-
-
Mizuta, K.1
Tokushige, M.2
-
13
-
-
0021525866
-
Chemical modification of essential histidine residues in aspartase with diethylpyrocarbonate
-
Ida N., Tokushige M. Chemical modification of essential histidine residues in aspartase with diethylpyrocarbonate. J. Biochem. 96:1984;1315-1321.
-
(1984)
J. Biochem.
, vol.96
, pp. 1315-1321
-
-
Ida, N.1
Tokushige, M.2
-
14
-
-
0022413995
-
Assignment of catalytically essential cysteine residues in aspartase by selective chemical modification with N-(7-dimethylamino-4-methylcoumarynyl)maleimide
-
Ida N., Tokushige M. Assignment of catalytically essential cysteine residues in aspartase by selective chemical modification with N-(7-dimethylamino-4-methylcoumarynyl)maleimide. J. Biochem. 98:1985;793-797.
-
(1985)
J. Biochem.
, vol.98
, pp. 793-797
-
-
Ida, N.1
Tokushige, M.2
-
15
-
-
0028928466
-
Elimination of the sensitivity of L-aspartase to active-site-directed inactivation without alteration of catalytic activity
-
Giorgianni F., Beranová S., Wesdemiotis C., Viola R.E. Elimination of the sensitivity of L-aspartase to active-site-directed inactivation without alteration of catalytic activity. Biochemistry. 34:1995;3529-3535.
-
(1995)
Biochemistry
, vol.34
, pp. 3529-3535
-
-
Giorgianni, F.1
Beranová, S.2
Wesdemiotis, C.3
Viola, R.E.4
-
17
-
-
0029078532
-
The multisubunit active site of fumarase C from Escherichia coli
-
Weaver T.M., Levitt D.G., Donnelly M.I., Wilkens-Stevens P.P., Banaszak L.J. The multisubunit active site of fumarase C from Escherichia coli. Nature Struct. Biol. 2:1995;654-662.
-
(1995)
Nature Struct. Biol.
, vol.2
, pp. 654-662
-
-
Weaver, T.M.1
Levitt, D.G.2
Donnelly, M.I.3
Wilkens-Stevens, P.P.4
Banaszak, L.J.5
-
19
-
-
0034651835
-
The structure of adenylosuccinate lyase, an enzyme with dual activity in the de novo purine biosynthetic pathway
-
Toth E.A., Yeates T.O. The structure of adenylosuccinate lyase, an enzyme with dual activity in the de novo purine biosynthetic pathway. Structure. 8:2000;163-174.
-
(2000)
Structure
, vol.8
, pp. 163-174
-
-
Toth, E.A.1
Yeates, T.O.2
-
20
-
-
0028518695
-
The structure of avian eye lens δ-crystallin reveals a new fold for a superfamily of oligomeric enzymes
-
Simpson A., Bateman O., Driessen H., Lindley P., Moss D., Mylvaganam S., et al. The structure of avian eye lens δ-crystallin reveals a new fold for a superfamily of oligomeric enzymes. Nature Struct. Biol. 1:1994;724-734.
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 724-734
-
-
Simpson, A.1
Bateman, O.2
Driessen, H.3
Lindley, P.4
Moss, D.5
Mylvaganam, S.6
-
21
-
-
0026794264
-
3-Carboxy-cis,cis-muconate lactonizing enzyme from Pseudomonas putida is homologous to the class II fumarase family: A new reaction in the evolution of a mechanistic motif
-
Williams S.E., Woolridge E.M., Ransom S.C., Landro J.A., Babbitt P.C., Kozarich J.W. 3-Carboxy-cis,cis-muconate lactonizing enzyme from Pseudomonas putida is homologous to the class II fumarase family: a new reaction in the evolution of a mechanistic motif. Biochemistry. 31:1992;9768-9776.
-
(1992)
Biochemistry
, vol.31
, pp. 9768-9776
-
-
Williams, S.E.1
Woolridge, E.M.2
Ransom, S.C.3
Landro, J.A.4
Babbitt, P.C.5
Kozarich, J.W.6
-
22
-
-
0029073757
-
Acid-base chemical mechanism of aspartase from Hafnia alvei
-
Yoon M.-Y., Thayer-Cook K.A., Berdis A.J., Karsten W.E., Schnackerz K.D., Cook P.F. Acid-base chemical mechanism of aspartase from Hafnia alvei. Arch. Biochem. Biophys. 320:1995;115-122.
-
(1995)
Arch. Biochem. Biophys.
, vol.320
, pp. 115-122
-
-
Yoon, M.-Y.1
Thayer-Cook, K.A.2
Berdis, A.J.3
Karsten, W.E.4
Schnackerz, K.D.5
Cook, P.F.6
-
23
-
-
0019332560
-
3-Carbanionic substrate analogues bind very tightly to fumarase and aspartase
-
Porter D.J.T., Bright H.J. 3-Carbanionic substrate analogues bind very tightly to fumarase and aspartase. J. Biol. Chem. 255:1980;4772-4780.
-
(1980)
J. Biol. Chem.
, vol.255
, pp. 4772-4780
-
-
Porter, D.J.T.1
Bright, H.J.2
-
24
-
-
0021769539
-
Kinetic mechanism and location of rate-determining steps for aspartase from Hafnia alvei
-
Nuiry I.I., Hermes J.D., Weiss P.M., Chen C.-Y., Cook P.F. Kinetic mechanism and location of rate-determining steps for aspartase from Hafnia alvei. Biochemistry. 23:1984;5168-5175.
-
(1984)
Biochemistry
, vol.23
, pp. 5168-5175
-
-
Nuiry, I.I.1
Hermes, J.D.2
Weiss, P.M.3
Chen, C.-Y.4
Cook, P.F.5
-
25
-
-
0033150884
-
Purification and characterization of thermostable aspartase from Bacillus sp YM55-1
-
Kawata Y., Tamura K., Yano S., Mizobata T., Nagai J., Esaki N., et al. Purification and characterization of thermostable aspartase from Bacillus sp YM55-1. Arch. Biochem. Biophys. 366:1999;40-46.
-
(1999)
Arch. Biochem. Biophys.
, vol.366
, pp. 40-46
-
-
Kawata, Y.1
Tamura, K.2
Yano, S.3
Mizobata, T.4
Nagai, J.5
Esaki, N.6
-
26
-
-
0034021294
-
Cloning and over-expression of thermostable Bacillus sp. YM55-1 aspartase and site-directed mutagenesis for probing a catalytic residue
-
Kawata Y., Tamura K., Kawamura M., Ikei K., Mizobata T., Nagai J., et al. Cloning and over-expression of thermostable Bacillus sp. YM55-1 aspartase and site-directed mutagenesis for probing a catalytic residue. Eur. J. Biochem. 267:2000;1847-1857.
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 1847-1857
-
-
Kawata, Y.1
Tamura, K.2
Kawamura, M.3
Ikei, K.4
Mizobata, T.5
Nagai, J.6
-
27
-
-
0029854921
-
Crystallographic studies of the catalytic and a second site in fumarase C from Escherichia coli
-
Weaver T., Banaszak L. Crystallographic studies of the catalytic and a second site in fumarase C from Escherichia coli. Biochemistry. 35:1996;13955-13965.
-
(1996)
Biochemistry
, vol.35
, pp. 13955-13965
-
-
Weaver, T.1
Banaszak, L.2
-
28
-
-
0030938063
-
Mutations of fumarase that distinguish between the active site and a nearby dicarboxylic acid biding site
-
Weaver T., Lees M., Banaszak L. Mutations of fumarase that distinguish between the active site and a nearby dicarboxylic acid biding site. Protein Sci. 6:1997;834-842.
-
(1997)
Protein Sci.
, vol.6
, pp. 834-842
-
-
Weaver, T.1
Lees, M.2
Banaszak, L.3
-
29
-
-
0032527680
-
Chemical mechanism of the endogenous argininosuccinate lyase activity of duck lens δ2-crystallin
-
Wu C.-Y., Lee H.-J., Wu S.-H., Chen S.-T., Chiou S.-H., Chang G.-G. Chemical mechanism of the endogenous argininosuccinate lyase activity of duck lens δ2-crystallin. Biochem. J. 333:1998;327-334.
-
(1998)
Biochem. J.
, vol.333
, pp. 327-334
-
-
Wu, C.-Y.1
Lee, H.-J.2
Wu, S.-H.3
Chen, S.-T.4
Chiou, S.-H.5
Chang, G.-G.6
-
30
-
-
0033524224
-
141 are critical contributors to the intersubunit catalytic site of adenylosuccinate lyase of Bacillus subtilis
-
141 are critical contributors to the intersubunit catalytic site of adenylosuccinate lyase of Bacillus subtilis. Biochemistry. 38:1999;22-32.
-
(1999)
Biochemistry
, vol.38
, pp. 22-32
-
-
Lee, T.T.1
Worby, C.2
Bao, Z.-Q.3
Dixon, J.E.4
Colman, R.F.5
-
31
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski R.A. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallog. 26:1993;283-291.
-
(1993)
J. Appl. Crystallog.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
-
32
-
-
13144294000
-
Crystal structures of native and recombinant yeast fumarase
-
Weaver T., Lees M., Zaitsev V., Zaitseva I., Duke E., Lindley P., et al. Crystal structures of native and recombinant yeast fumarase. J. Mol. Biol. 280:1998;431-442.
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 431-442
-
-
Weaver, T.1
Lees, M.2
Zaitsev, V.3
Zaitseva, I.4
Duke, E.5
Lindley, P.6
-
33
-
-
0033596741
-
Crystal structure of an inactive duck δ II crystallin mutant with bound argininosuccinate
-
Vallée F., Turner M.A., Lindley P.L., Howell P.L. Crystal structure of an inactive duck δ II crystallin mutant with bound argininosuccinate. Biochemistry. 38:1999;2425-2434.
-
(1999)
Biochemistry
, vol.38
, pp. 2425-2434
-
-
Vallée, F.1
Turner, M.A.2
Lindley, P.L.3
Howell, P.L.4
-
34
-
-
0029073551
-
Exploring the role of histidines in the catalytic activity of duck δ-crystallins using site-directed mutagenesis
-
Patejunas G., Barbosa P., Lacombe M., O'Brien W.E. Exploring the role of histidines in the catalytic activity of duck δ-crystallins using site-directed mutagenesis. Expt. Eye Res. 61:1995;151-154.
-
(1995)
Expt. Eye Res.
, vol.61
, pp. 151-154
-
-
Patejunas, G.1
Barbosa, P.2
Lacombe, M.3
O'Brien, W.E.4
-
35
-
-
0019157471
-
Use of isotope effects to deduce the chemical mechanism of fumarase
-
Blanchard J.S., Cleland W.W. Use of isotope effects to deduce the chemical mechanism of fumarase. Biochemistry. 19:1980;4506-4513.
-
(1980)
Biochemistry
, vol.19
, pp. 4506-4513
-
-
Blanchard, J.S.1
Cleland, W.W.2
-
36
-
-
0024298585
-
L-Aspartase from Escherichia coli: Substrate specificity and role of divalent metal ions
-
Falzone C.J., Karsten W.E., Conley J.D., Viola R.E. L-Aspartase from Escherichia coli: substrate specificity and role of divalent metal ions. Biochemistry. 27:1988;9089-9093.
-
(1988)
Biochemistry
, vol.27
, pp. 9089-9093
-
-
Falzone, C.J.1
Karsten, W.E.2
Conley, J.D.3
Viola, R.E.4
-
38
-
-
0000024872
-
The temperature dependence of the steady state kinetic parameters of the fumarase reaction
-
Brant D.A., Barnett L.B., Alberty R.A. The temperature dependence of the steady state kinetic parameters of the fumarase reaction. J. Am. Chem. Soc. 85:1963;2204-2209.
-
(1963)
J. Am. Chem. Soc.
, vol.85
, pp. 2204-2209
-
-
Brant, D.A.1
Barnett, L.B.2
Alberty, R.A.3
-
39
-
-
0025720599
-
Expression of duck lens δ-crystallin cDNAs in yeast and bacterial hosts. δ2-Crystallin is an active arginionosuccinate lyase
-
Barbosa P., Wistow G.J., Cialkowski M., Piatigorsky J., O'Brien W.E. Expression of duck lens δ-crystallin cDNAs in yeast and bacterial hosts. δ2-Crystallin is an active arginionosuccinate lyase. J. Biol. Chem. 266:1991;22319-22322.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 22319-22322
-
-
Barbosa, P.1
Wistow, G.J.2
Cialkowski, M.3
Piatigorsky, J.4
O'Brien, W.E.5
-
40
-
-
0035814902
-
Structural studies of duck δ1 and δ2 crystallin suggest conformational changes occur during catalysis
-
Sampaleanu L.M., Vallée F., Slingsby C., Howell P.L. Structural studies of duck δ1 and δ2 crystallin suggest conformational changes occur during catalysis. Biochemistry. 40:2001;2732-2742.
-
(2001)
Biochemistry
, vol.40
, pp. 2732-2742
-
-
Sampaleanu, L.M.1
Vallée, F.2
Slingsby, C.3
Howell, P.L.4
-
41
-
-
0033596716
-
Mutational analysis of amino acid residues involved in argininosuccinate lyase activity in duck δ II crystallin
-
Chakraborty A.R., Davidson A., Howell P.L. Mutational analysis of amino acid residues involved in argininosuccinate lyase activity in duck δ II crystallin. Biochemistry. 38:1999;2435-2443.
-
(1999)
Biochemistry
, vol.38
, pp. 2435-2443
-
-
Chakraborty, A.R.1
Davidson, A.2
Howell, P.L.3
-
42
-
-
0025166944
-
Thermodynamics of industrially-important, enzyme-catalyzed reactions
-
Tewari Y.B. Thermodynamics of industrially-important, enzyme-catalyzed reactions. Appl. Biochem. Biotechnol. 23:1990;187-203.
-
(1990)
Appl. Biochem. Biotechnol.
, vol.23
, pp. 187-203
-
-
Tewari, Y.B.1
-
43
-
-
0034017055
-
Factors enhancing protein thermostability
-
Kumar S., Tsai C.-J., Nussinov R. Factors enhancing protein thermostability. Protein Eng. 13:2000;179-191.
-
(2000)
Protein Eng.
, vol.13
, pp. 179-191
-
-
Kumar, S.1
Tsai, C.-J.2
Nussinov, R.3
-
44
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22:1994;4673-4680.
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
45
-
-
0001455061
-
Weissenberg camera for macromolecules with imaging plate data collection system at the Photon Factory: Present status and future plan
-
Sakabe N., Ikemizu S., Sakabe K., Higashi T., Nakagawa A., Watanabe N., et al. Weissenberg camera for macromolecules with imaging plate data collection system at the Photon Factory: present status and future plan. Rev. Sci. Instrum. 66:1995;1276-1281.
-
(1995)
Rev. Sci. Instrum.
, vol.66
, pp. 1276-1281
-
-
Sakabe, N.1
Ikemizu, S.2
Sakabe, K.3
Higashi, T.4
Nakagawa, A.5
Watanabe, N.6
-
46
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276:1997;307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
47
-
-
84920325457
-
AMoRe: An automated package for molecular replacement
-
Navaza J. AMoRe: an automated package for molecular replacement. Acta Crystallog. sect. A. 50:1994;157-163.
-
(1994)
Acta Crystallog. sect. A
, vol.50
, pp. 157-163
-
-
Navaza, J.1
-
50
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brünger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., et al. Crystallography and NMR system: a new software suite for macromolecular structure determination. Acta Crystallog. sect. D. 54:1998;905-921.
-
(1998)
Acta Crystallog. sect. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
-
52
-
-
0028304962
-
Satisfying hydrogen bonding potential in proteins
-
McDonald I.K., Thornton J.M. Satisfying hydrogen bonding potential in proteins. J. Mol. Biol. 238:1994;777-793.
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 777-793
-
-
McDonald, I.K.1
Thornton, J.M.2
-
53
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
The CCP4 suite: programs for protein crystallography. Acta Crystallog. sect. D. 50:1994;760-763.
-
(1994)
Acta Crystallog. sect. D
, vol.50
, pp. 760-763
-
-
-
54
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls A., Sharp K.A., Honig B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins: Struct. Funct. Genet. 11:1991;281-296.
-
(1991)
Proteins: Struct. Funct. Genet.
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
55
-
-
0030729838
-
An extensively modified version of MolScript that includes greatly enhanced coloring capabilities
-
Esnouf R.M. An extensively modified version of MolScript that includes greatly enhanced coloring capabilities. J. Mol. Graph. Model. 15:1997;132-134.
-
(1997)
J. Mol. Graph. Model.
, vol.15
, pp. 132-134
-
-
Esnouf, R.M.1
-
56
-
-
0030815133
-
Raster3D: Photorealistic molecular graphics
-
Merritt E.A., Bacon D.J. Raster3D: photorealistic molecular graphics. Methods Enzymol. 277:1997;505-524.
-
(1997)
Methods Enzymol.
, vol.277
, pp. 505-524
-
-
Merritt, E.A.1
Bacon, D.J.2
-
57
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis P.J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallog. 24:1991;946-950.
-
(1991)
J. Appl. Crystallog.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
|