Diversification of hypervariable region 1 of hepatitis C virus after liver transplantation

Journal of Medical Virology

Volumn 70, Issue 2, 2003, Pages 212-218

  Fan, Xiaofeng ^a   Di Bisceglie, Adrian M ^a  

^a SAINT LOUIS UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

HCV; HVR1; Liver transplantation

Indexed keywords

HEPATITIS C ANTIBODY;

ADAPTATION; ADULT; ARTICLE; CASE REPORT; ENZYME LINKED IMMUNOSORBENT ASSAY; GENE LOCATION; GENE MUTATION; GENE SEQUENCE; GENETIC VARIABILITY; HEPATITIS C VIRUS; HUMAN; HUMAN TISSUE; HYPERVARIABLE REGION 1; IMMUNE DEFICIENCY; LIVER TRANSPLANTATION; MALE; MOLECULAR CLONING; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROTEIN DOMAIN; RNA ANALYSIS; SEQUENCE ANALYSIS; VIRUS GENE; VIRUS LOAD; VIRUS REPLICATION;

AMINO ACID SEQUENCE; CROSS REACTIONS; EVOLUTION, MOLECULAR; HEPACIVIRUS; HEPATITIS C ANTIBODIES; HEPATITIS C, CHRONIC; HUMANS; LIVER TRANSPLANTATION; MALE; MIDDLE AGED; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS;

HEPATITIS C VIRUS;

EID: 0037410261     PISSN: 01466615     EISSN: None     Source Type: Journal    
DOI: 10.1002/jmv.10380     Document Type: Article

References (31)

1. Alter HJ, Sanchez-Pescador R, Urdea MS, Wilber JC, Lagier RJ, Di Bisceglie AM, Shih JW, Neuwald PD. 1995. Evaluation of branched DNA signal amplification for the detection of hepatitis C virus RNA. J Viral Hepatitis 2:121-132.
2. Booth JC, Kumar U, Webster D, Monjardino J, Thomas HC. 1998. Comparison of the rate of sequence variation in the hypervariable region of E2/NS1 region of hepatitis C virus in normal and hypogammaglobulinemic patients. Hepatology 27:223-227.
3. Fan X, Solomon H, Poulos JE, Neuschwander-Tetri BA, Di Bisceglie AM. 1999. Comparison of genetic heterogeneity of hepatitis C viral RNA in liver tissue and serum. Am J Gastroenterol 94:1347-1354.
4. Fan X, Lyra AC, Tan D, Xu Y, Di Bisceglie AM. 2001. Differential amplification of hypervariable region 1 of hepatitis C virus by partially mismatched primers. Biochem Biophys Res Commun 284:694-697.
5. Fan X, Di Bisceglie AM. 2002. Genetic characterization of hypervariable region 1 in patients chronically infected with hepatitis C virus genotype 2. J Med Virol 64:325-333.
6. Farci P, Shimoda A, Wong D, Cabezon T, De Gioannis D, Strazzera A, Shimizu Y, Shapiro M, Alter HJ, Purcell RH. 1996. Prevention of hepatitis C virus infection in chimpanzees by hyperimmune serum against the hypervariable region 1 of the envelope 2 protein. Proc Natl Acad Sci USA 93:15394-15399.
7. Forns X, Thimme R, Govindarajan S, Emerson SU, Purcell RH, Chisari FV, Bukh J. 2000. Hepatitis C virus lacking the hypervariable region 1 of the second envelope protein is infectious and causes acute resolving or persistent infection in chimpanzees. Proc Natl Acad Sci USA 97:13318-13323.
8. Fukumoto T, Berg T, Ku Y, Bechstein WO, Knoop M, Lemmens HP, Lobeck H, Hopf U, Neuhaus P. 1996. Viral dynamics of hepatitis C early after orthotopic liver transplantation: evidence for rapid turnover of serum virions. Hepatology 24:1351-1354.
9. Gowans EJ. 2000. Distribution of markers of hepatitis V virus infection throughout the body. Semin Liver Dis 20:85-102.
10. Hanahan D. 1985. Techniques for transformation of E. coli. In: Glover D, editor. DNA cloning: a practical approach. Vol 1. London: IRL Press. p 7.
11. Higgins DG, Sharp PM. 1988. CLUSTAL W: a package for performing multiple sequence alignment on a microcomputer. Gene 73:237-244.
12. Kato N, Ootsuyama Y, Ohkoshi S, Nakazawa T, Sekiya H, Hijikata M, Shimotohno K. 1992a. Characterization of hypervariable regions in the putative envelope protein of hepatitis C virus. Biochem Biophys Res Commun 189:119-127.
13. Kato N, Ootsuyama Y, Tanaka T, Nakagawa M, Nakazawa T, Muraiso K, Ohkoshi S, Hijikata M, Shimotohno K. 1992b. Marked sequence diversity in the putative envelope proteins of hepatitis C viruses. Virus Res 22:107-123.
14. Kato N, Ootsuyama Y, Sekiya H, Ohkoshi S, Nakazawa T, Hijikata M, Shimotohno K. 1994. Genetic drift in hypervariable region 1 of the viral genome in persistent hepatitis C virus infection. J Virol 68:4776-4784.
15. Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120.
16. Kimura S, Tamura K, Nei M. 1993. MEGA: molecular evolutionary genetics analysis. Version 1.0. Philadelphia: Pennsylvania State University.
17. Kumar U, Monjardino J, Thomas HC. 1994. Hypervariable region of hepatitis C virus envelope glycoprotein (E2/NS1) in an agamma-globulinemic patient. Gastroenterology 106:1072-1075.
18. Kwok S, Higuchi R. 1989. Avoiding false positive with PCR. Nature 339:327-328.
19. Lyra AC, Fan X, Lang DM, Yusim K, Ramrakhiani S, Brunt EM, Korber B, Perelson AS, Di Bisceglie AM. 2002. Evolution of hepatitis C viral quasispecies after liver transplantation. Gastroenterology 123:1485-1493.
20. Majid A, Jackson P, Lawal Z, Pearson GM, Parker H, Alexander GJ, Allain JP, Petrik J. 1997. Ontogeny of hepatitis C virus (HCV) hypervariable region 1 (HVR1) heterogeneity and HVR1 antibody responses over a 3 year period in a patient infected with HCV type 2b. J Gen Virol 80:317-325.
21. Odeberg J, Yun Z, Sonnerborg A, Bjoro K, Uhlen M, Lundeberg J. 1997. Variation of hepatitis C virus hypervariable region 1 in immunocompromised patients. J Infect Dis 175:938-943.
22. Pessoa MG, Bzowej N, Berenguer M, Phung Y, Kim M, Ferrell L, Hassoba H, Wright TL. 1999. Evolution of hepatitis C virus quasispecies in patients with severe cholestatic hepatitis after liver transplantation. Hepatology 30:1513-1520.
23. Ray SC, Wang YM, Laeyendecker O, Ticehurst JR, Villano SA, Thomas DL. 1999. Acute hepatitis C virus structural gene sequences as predictors of persistent viremia: hypervariable region 1 as a decoy. J Virol 73:2938-2946.
24. Saitou N, Nei M. 1987. The neighbor-joining method: a new method for constructing phylogenetic trees. Mol Biol Evol 4:406-425.
25. Shimizu YK, Igarashi H, Kiyohara T, Cabezon T, Farci P, Purcell RH, Yoshikura H. 1996. A hyperimmune serum against a synthetic peptide corresponding to the hypervariable region 1 of hepatitis C virus can prevent viral infection in cell cultures. Virology 223:409-412.
26. Shindo M, Di Bisceglie AM, Biswas R, Mihalik K, Feinstone SM. 1992. Hepatitis C virus replication during acute infection in the chimpanzee. J Infect Dis 166:424-427.
27. Sole RV, Ferrer R, Gonzalez-Garcia I, Quer J, Domingo E. 1999. Red queen dynamics, competition and critical points in a model of RNA virus quasispecies. J Theor Biol 198:47-59.
28. Terrault NA, Dailey PJ, Ferrell L, Collins ML, Wilber JC, Urdea MS, Bhandari BN, Wright TL. 1997. Hepatitis C virus: quantitation and distribution in liver. J Med Virol 51:217-224.
29. Toyoda H, Fukuda Y, Koyama Y, Takamatsu J, Saito H, Hayakawa T. 1997. Effect of immunosuppression on composition of quasispecies population of hepatitis C virus in patients with chronic hepatitis C coinfected with human immunodeficiency virus. J Hepatol 26:975-982.
30. Weiner AJ, Thaler MM, Crawford K, Ching K, Kansopon J, Chien DY, Hall JE, Hu F, Houghton M. 1993. A unique, predominant hepatitis C virus variant found in an infant born to a mother with multiple variants. J Virol 67:4365-4368.
31. Zibert A, Kraas W, Meisel H, Jung G, Roggendorf M. 1997. Epitope mapping of antibodies directed against hypervariable region 1 in acute self-limiting and chronic infections due to hepatitis C virus. J Virol 71:4123-4127.