-
1
-
-
0028292461
-
Biological meaning, statistical significance, and classification of local spatial similarities in nonhomologous proteins
-
Alexandrov N.N., Go N. Biological meaning, statistical significance, and classification of local spatial similarities in nonhomologous proteins. Protein. Sci. 3(6):1994;866-875.
-
(1994)
Protein. Sci.
, vol.3
, Issue.6
, pp. 866-875
-
-
Alexandrov, N.N.1
Go, N.2
-
3
-
-
0035816218
-
Domain combinations in archaeal, eubacterial and eukaryotic proteomes
-
Apic G., Gough J., Teichmann S.A. Domain combinations in archaeal, eubacterial and eukaryotic proteomes. J. Mol. Biol. 310(2):2001;311-325.
-
(2001)
J. Mol. Biol.
, vol.310
, Issue.2
, pp. 311-325
-
-
Apic, G.1
Gough, J.2
Teichmann, S.A.3
-
4
-
-
18744421488
-
Mean-field theory for scale-free random networks
-
Barabasi A.L., Albert R., Jeong H. Mean-field theory for scale-free random networks. Physica A. 272(1-2):1999;173-187.
-
(1999)
Physica A
, vol.272
, Issue.1-2
, pp. 173-187
-
-
Barabasi, A.L.1
Albert, R.2
Jeong, H.3
-
5
-
-
0034883255
-
Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences
-
Bergman C.M., Kreitman M. Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences. Genome Res. 11(8):2001;1335-1345.
-
(2001)
Genome Res.
, vol.11
, Issue.8
, pp. 1335-1345
-
-
Bergman, C.M.1
Kreitman, M.2
-
6
-
-
0035441887
-
World Wide Web scaling exponent from Simon's 1955 model
-
S. Bornholdt, H. Ebel, World Wide Web scaling exponent from Simon's 1955 model, Phys. Rev. E 64 (3) (2001) 035104-1-035104-4.
-
(2001)
Phys. Rev. E
, vol.64
, Issue.3
, pp. 0351041-0351044
-
-
Bornholdt, S.1
Ebel, H.2
-
7
-
-
0033358559
-
The size distribution of homozygous segments in the human genome
-
Clark A.G. The size distribution of homozygous segments in the human genome. Amer. J. Hum. Genet. 65(6):1999;1489-1492.
-
(1999)
Amer. J. Hum. Genet.
, vol.65
, Issue.6
, pp. 1489-1492
-
-
Clark, A.G.1
-
8
-
-
0035824824
-
Mining DNA microarray data using a novel approach based on graph theory
-
del Rio G., Bartley T.F., del-Rio H., Rao R., Jin K.L., Greenberg D.A., Eshoo M., Bredesen D.E. Mining DNA microarray data using a novel approach based on graph theory. FEBS. Lett. 509(2):2001;230-234.
-
(2001)
FEBS. Lett.
, vol.509
, Issue.2
, pp. 230-234
-
-
Del Rio, G.1
Bartley, T.F.2
Del-Rio, H.3
Rao, R.4
Jin, K.L.5
Greenberg, D.A.6
Eshoo, M.7
Bredesen, D.E.8
-
9
-
-
0036006175
-
Wrestling with pleiotropy: Genomic and topologic analysis of the yeast gene expression network
-
D.E. Featherstone, K. Broadie, Wrestling with pleiotropy: genomic and topologic analysis of the yeast gene expression network, BioEssay 24 (3) (2002) 276-274.
-
(2002)
BioEssay
, vol.24
, Issue.3
, pp. 276-274
-
-
Featherstone, D.E.1
Broadie, K.2
-
10
-
-
0003421261
-
-
Wiley, New York
-
W. Feller, An introduction to Probability Theory and its Applications, 3rd Edition, Vol. 1, Wiley, New York, 1968.
-
(1968)
An Introduction to Probability Theory and its Applications, 3rd Edition
, vol.1
-
-
Feller, W.1
-
11
-
-
0031734751
-
Comparing genomes in terms of protein structure: Surveys of a finite list
-
Gerstein M., Hegyi H. Comparing genomes in terms of protein structure. surveys of a finite list FEMS Microbiol. Rev. 22(4):1998;277-304.
-
(1998)
FEMS Microbiol. Rev.
, vol.22
, Issue.4
, pp. 277-304
-
-
Gerstein, M.1
Hegyi, H.2
-
12
-
-
0001818360
-
Predictive aspects of a stochastic-model for citation processes
-
Glanzel W., Schubert A. Predictive aspects of a stochastic-model for citation processes. Inform. Process. Manage. 31(1):1995;69-80.
-
(1995)
Inform. Process. Manage.
, vol.31
, Issue.1
, pp. 69-80
-
-
Glanzel, W.1
Schubert, A.2
-
13
-
-
0028943946
-
The size distribution of insertions and deletions in human and roden pseudogenes suggests the logarithmic gap penalty for sequence alignment
-
Gu X., Li W.H. The size distribution of insertions and deletions in human and roden pseudogenes suggests the logarithmic gap penalty for sequence alignment. J. Mol. Evol. 40(4):1995;464-473.
-
(1995)
J. Mol. Evol.
, vol.40
, Issue.4
, pp. 464-473
-
-
Gu, X.1
Li, W.H.2
-
14
-
-
0029785147
-
Mapping the protein universe
-
Holm L., Sander C. Mapping the protein universe. Science. 273(5275):1996;595-603.
-
(1996)
Science
, vol.273
, Issue.5275
, pp. 595-603
-
-
Holm, L.1
Sander, C.2
-
15
-
-
0034307684
-
Probability in transcriptional regulation and implications for leukocyte differentiation and inducible gene expression
-
Hume D.A. Probability in transcriptional regulation and implications for leukocyte differentiation and inducible gene expression. Blood. 96:2000;2323-2328.
-
(2000)
Blood
, vol.96
, pp. 2323-2328
-
-
Hume, D.A.1
-
16
-
-
0031924363
-
The frequency distribution of gene family sizes in complete genomes
-
Huynen M.A., van Nimwegen E. The frequency distribution of gene family sizes in complete genomes. Mol. Biol. Evol. 15(5):1998;583-589.
-
(1998)
Mol. Biol. Evol.
, vol.15
, Issue.5
, pp. 583-589
-
-
Huynen, M.A.1
Van Nimwegen, E.2
-
18
-
-
0002114070
-
The place of mathematics in the medical and biological statistics
-
Irwin J.O. The place of mathematics in the medical and biological statistics. J. Roy. Statist. Soc. A. 126:1963;1-45.
-
(1963)
J. Roy. Statist. Soc. A
, vol.126
, pp. 1-45
-
-
Irwin, J.O.1
-
19
-
-
0033972791
-
The balance sheet for transcription: An analysis of nuclear RNA metabolism in mammalian cells
-
Jackson D.A., Pombo A., Iborra F. The balance sheet for transcription. an analysis of nuclear RNA metabolism in mammalian cells FASEB J. 14:2000;242-254.
-
(2000)
FASEB J.
, vol.14
, pp. 242-254
-
-
Jackson, D.A.1
Pombo, A.2
Iborra, F.3
-
20
-
-
0033772765
-
Regulatory networks revealed by transcriptional profiling of damaged cells: Rpn4 links base excision repair with proteasomes
-
Jelinsky S.A., Estep P., Church G.M., Samson D. Regulatory networks revealed by transcriptional profiling of damaged cells. Rpn4 links base excision repair with proteasomes Mol. Cell. Biol. 20:2000;8157-8167.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 8157-8167
-
-
Jelinsky, S.A.1
Estep, P.2
Church, G.M.3
Samson, D.4
-
21
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong H., Tombor B., Albert R., Ottval Z.N., Barabasi A.-L. The large-scale organization of metabolic networks. Nature. 407(6804):2000;651-654.
-
(2000)
Nature
, vol.407
, Issue.6804
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Ottval, Z.N.4
Barabasi, A.-L.5
-
24
-
-
0036184726
-
Interactive InterPro-based comparisons of proteins in whole genomes
-
Kanapin A., Apweiler R., Biswas M., Fleischmann W., Karavidopoulou Y., Kersey P., Kriventseva E.V., Mittard V., Mulder N., Oinn T., Phan I., Servant F., Zdobnov E. Interactive InterPro-based comparisons of proteins in whole genomes. Bioinformatics. 18(2):2002;374-375.
-
(2002)
Bioinformatics
, vol.18
, Issue.2
, pp. 374-375
-
-
Kanapin, A.1
Apweiler, R.2
Biswas, M.3
Fleischmann, W.4
Karavidopoulou, Y.5
Kersey, P.6
Kriventseva, E.V.7
Mittard, V.8
Mulder, N.9
Oinn, T.10
Phan, I.11
Servant, F.12
Zdobnov, E.13
-
26
-
-
0035555690
-
Distribution associated with stochastic processes of gene expression in a single eukaryotic cell
-
V.A. Kuznetsov, Distribution associated with stochastic processes of gene expression in a single eukaryotic cell, EURASIP J. Appl. Signal Process. (4) (2001) 285-296.
-
(2001)
EURASIP J. Appl. Signal Process.
, Issue.4
, pp. 285-296
-
-
Kuznetsov, V.A.1
-
27
-
-
0003111370
-
Statistics of the numbers of transcripts and protein sequences encoded in the genome
-
W. Zhang, & I. Shmulevich. Boston: Kluwer
-
Kuznetsov V.A. Statistics of the numbers of transcripts and protein sequences encoded in the genome. Zhang W., Shmulevich I. Computational and Statistical Methods to Genomics. 2002;125-171 Kluwer, Boston.
-
(2002)
Computational and Statistical Methods to Genomics
, pp. 125-171
-
-
Kuznetsov, V.A.1
-
28
-
-
0036021408
-
General statistics of stochastic process of gene expression in eukaryotic cells
-
Kuznetsov V.A., Knott G.D., Bonner R.F. General statistics of stochastic process of gene expression in eukaryotic cells. Genetics. 161:2002;1321-1332.
-
(2002)
Genetics
, vol.161
, pp. 1321-1332
-
-
Kuznetsov, V.A.1
Knott, G.D.2
Bonner, R.F.3
-
29
-
-
0013370248
-
The numbers of protein domain sequences and protein coding genes in the evolved proteomes
-
Novosibirsk, Russia, IC&G, Novosibirsk, Russia, July 14-20
-
V.A. Kuznetsov, V.V. Pickalov, The numbers of protein domain sequences and protein coding genes in the evolved proteomes, in: Proceedings of the Third International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2002), Vol. 3, Novosibirsk, Russia, IC&G, Novosibirsk, Russia, July 14-20, 2002, pp. 160-163.
-
(2002)
Proceedings of the Third International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2002)
, vol.3
, pp. 160-163
-
-
Kuznetsov, V.A.1
Pickalov, V.V.2
-
30
-
-
0032167516
-
Transcription occurs in pulses in muscle fibers
-
Newlands S., Levitt L.K., Robinson C.S., Karpf A.B., Hodgson V.R.et al. Transcription occurs in pulses in muscle fibers. Genes Dev. 12:1998;2748-2758.
-
(1998)
Genes Dev.
, vol.12
, pp. 2748-2758
-
-
Newlands, S.1
Levitt, L.K.2
Robinson, C.S.3
Karpf, A.B.4
Hodgson, V.R.5
-
31
-
-
0028593509
-
Protein superfamilies and domain superfolds
-
Orengo C.A., Jones D.T., Thornton J.M. Protein superfamilies and domain superfolds. Nature. 372:1994;631-634.
-
(1994)
Nature
, vol.372
, pp. 631-634
-
-
Orengo, C.A.1
Jones, D.T.2
Thornton, J.M.3
-
32
-
-
0000460944
-
Zipf-like behavior in prokaryotic protein expression
-
Ramsden J.J., Vohradsky J. Zipf-like behavior in prokaryotic protein expression. Phys. Rev. E. 58(6):1998;7777-7780.
-
(1998)
Phys. Rev. E
, vol.58
, Issue.6
, pp. 7777-7780
-
-
Ramsden, J.J.1
Vohradsky, J.2
-
33
-
-
0034777716
-
Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome
-
Rzhetsky A., Gomez S.M. Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome. Bioinformatics. 17(10):2001;988-996.
-
(2001)
Bioinformatics
, vol.17
, Issue.10
, pp. 988-996
-
-
Rzhetsky, A.1
Gomez, S.M.2
-
34
-
-
0000570212
-
On a class of skew distribution functions
-
Simon H.A. On a class of skew distribution functions. Biometrika. 42:1955;425-440.
-
(1955)
Biometrika
, vol.42
, pp. 425-440
-
-
Simon, H.A.1
-
35
-
-
0032077377
-
From specific gene regulation to genomic networks: A global analysis of transcriptional regulation in Escherichia coli
-
Thieffry D., Huerta A.M., Perez-Rueda E., Collado-Vides J. From specific gene regulation to genomic networks. a global analysis of transcriptional regulation in Escherichia coli BioEssays. 20(5):1998;433-440.
-
(1998)
BioEssays
, vol.20
, Issue.5
, pp. 433-440
-
-
Thieffry, D.1
Huerta, A.M.2
Perez-Rueda, E.3
Collado-Vides, J.4
-
36
-
-
0032706622
-
Analysis of human transcriptomes
-
Velculescu V.E., Madden S.L., Zhang L., Lash A.E., Yu J., Rago C., Lal A., Wang C.J., Beaudry G.A., Ciriello K.M., Cook B.P., Dufault M.R., Ferguson A.T., Gao Y., He T.C., Hermeking H., Hiraldo S.K., Hwang P.M., Lopez M.A., Luderer H.F.et al. Analysis of human transcriptomes. Nat. Genet. 23(4):1999;387-388.
-
(1999)
Nat. Genet.
, vol.23
, Issue.4
, pp. 387-388
-
-
Velculescu, V.E.1
Madden, S.L.2
Zhang, L.3
Lash, A.E.4
Yu, J.5
Rago, C.6
Lal, A.7
Wang, C.J.8
Beaudry, G.A.9
Ciriello, K.M.10
Cook, B.P.11
Dufault, M.R.12
Ferguson, A.T.13
Gao, Y.14
He, T.C.15
Hermeking, H.16
Hiraldo, S.K.17
Hwang, P.M.18
Lopez, M.A.19
Luderer, H.F.20
more..
-
37
-
-
0035823264
-
The small world inside large metabolic networks
-
Wagner A., Fell D.A. The small world inside large metabolic networks. Proc. Roy. Soc. London B. 268(1478):2001;1803-1810.
-
(2001)
Proc. Roy. Soc. London B
, vol.268
, Issue.1478
, pp. 1803-1810
-
-
Wagner, A.1
Fell, D.A.2
-
38
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
June
-
Watts D.J., Strogatz S.H. Collective dynamics of 'small-world' networks. Nature. 393:June 1998;440-442.
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
39
-
-
0036008543
-
Scale-free networks in biology: New insights into the fundamentals of evolution?
-
Wolf Y.I., Karev G., Koonin E.V. Scale-free networks in biology. new insights into the fundamentals of evolution? BioEssays. 24(2):2002;105-109.
-
(2002)
BioEssays
, vol.24
, Issue.2
, pp. 105-109
-
-
Wolf, Y.I.1
Karev, G.2
Koonin, E.V.3
-
40
-
-
0034887573
-
Scale-free behavior in protein domain networks
-
Wuchty S. Scale-free behavior in protein domain networks. Mol. Biol. Evol. 18(9):2001;1694-1702.
-
(2001)
Mol. Biol. Evol.
, vol.18
, Issue.9
, pp. 1694-1702
-
-
Wuchty, S.1
-
41
-
-
12244279495
-
-
ww.ncbi.nlm.nih.gov/UniLib/.
-
-
-
-
42
-
-
12244253192
-
-
www.ncbi.nlm.nih.gov/UNIGENE/.
-
-
-
-
43
-
-
12244270777
-
-
www.ncbi.nlm.nih.gov/SAGE/.
-
-
-
-
44
-
-
12244287223
-
-
www.ebi.ac.uk/interpro/.
-
-
-
-
45
-
-
12244274732
-
-
ftp://genome-ftp.stanford.edu.pub/yeast/tables/SAGE_Data.
-
-
-
-
46
-
-
12244263217
-
-
www.sagenet.org;
-
-
-
-
47
-
-
12244250506
-
-
www.hsph.harvard/geneexpression.
-
-
-
-
48
-
-
0001778604
-
A mathematical theory of evolution, based on the conclusions of Dr. J.C. Willis, F.R.S
-
Yule G.U. A mathematical theory of evolution, based on the conclusions of Dr. J.C. Willis, F.R.S. Philos. Trans. Roy. Soc. London Ser. B. 213:1924;21-87.
-
(1924)
Philos. Trans. Roy. Soc. London Ser. B
, vol.213
, pp. 21-87
-
-
Yule, G.U.1
|