Identification, expression, and import of components 17 and 23 of the inner mitochondrial membrane translocase from Arabidopsis

Plant Physiology

Volumn 131, Issue 4, 2003, Pages 1737-1747

  Murcha, Monika W ^a   Lister, Ryan ^a   Ho, Angela Y Y ^a   Whelan, James ^a  

^a UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; DEGRADATION; GENES; MUTAGENESIS; PROTEINS; YEAST;

MITOCHONDRIA;

CELLS;

ARABIDOPSIS; EMBRYOPHYTA; EUKARYOTA; MAMMALIA; SACCHAROMYCES CEREVISIAE;

EID: 0037393286     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.102.016808     Document Type: Article

References (64)

1. Adams KL, Daley DO, Whelan J, Palmer JD (2002) Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts. Plant Cell 14: 931-943
2. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402
3. Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815
4. Bauer MF, Hofmann S, Neupert W, Brunner M (2000) Protein translocation into mitochondria: the role of the complexes. Trends Cell Biol 10: 25-31
5. Bauer MF, Rothbauer U, Muhlenbein N, Smith RJ, Gerbitz K, Neupert W, Brunner M, Hofmann S (1999) The mitochondrial TIM22 preprotein translocase is highly conserved throughout the eukaryotic kingdom. FEBS Lett 464: 41-47
6. Brix J, Rudiger S, Bukau B, Schneider-Mergener J, Pfanner N (1999) Distribution of binding sequences for mitochondrial import receptors Tom20, TOM22 and TOM70 in a presequence-carrying preprotein and a non-cleavable preprotein. J Biol Chem 274: 16522-16530
7. Chou PY, Fasman GD (1979) Prediction of beta turns. Biophys J 26: 367-373
8. Considine MJ, Daley DO, Whelan J (2001) The expression of alternative oxidase and uncoupling protein during fruit ripening in mango. Plant Physiol 126: 1619-1629
9. Cserzo M, Wallin E, Simon I, von Heijne G, Elofsson A (1997) Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method. Protein Eng 10: 673-676
10. Deleage G, Roux B (1987) An algorithm for protein secondary structure prediction based on class prediction. Protein Eng 1: 289-294
11. Dietrich A, Marechal-Drouard L, Carneiro V, Cosset A, Small I (1996a) A single base change prevents import of cytosolic tRNA(Ala) into mitochondria in transgenic plants. Plant J 10: 913-918
12. Dietrich A, Small I, Cosset A, Weil JH, Marechal-Drouard L (1996b) Editing and import: strategies for providing plant mitochondria with a complete set of functional transfer RNAs. Biochimie 78: 518-529
13. Donzeau M, Kaldi K, Adam A, Paschen S, Wanner G, Guiard B, Bauer MF, Neupert W, Brunner M (2000) TIM23 links the inner and outer mitochondrial membranes. Cell 101: 401-412
14. Douce R, Neuberger M (1989) The uniqueness of plant mitochondria. Annu Rev Plant Physiol Plant Mol Biol 40: 371-414
15. Emanuelsson O, Nielsen H, Brunak S, von Heijne G (2000) Predicting subcellular localization of proteins based on their N-terminus amino acid sequence. J Mol Biol 300: 1005-1016
16. George R, Walsh P, Beddoe T, Lithgow T (2002) The nascent polypeptide-associated complex (NAC) promotes interaction of ribosomes with the mitochondrial surface in vivo. FEBS Lett 516: 213-216
17. 1 complex in plants. J Bioenerg Biomembr 31: 259-274
18. Goffeau A, Aert R, Agostini-Carbone ML, Aigle AM, Alberghina L, Albermann K, Albers M, Aldea M, Alexandraki D, Aljinoni G et al. (1997) The Yeast Genome Directory. Nature Suppl 387: 1-105
19. Hartl FU, Pfanner N, Nicholson DW, Neupert W (1989) Mitochondrial protein import. Biochim Biophys Acta 988: 1-45
20. Hill JE, Myers AM, Koerner TJ, Tzagoloff A (1986) Yeast/E. coli shuttle vectors with multiple unique restriction sites. Yeast 2: 163-167
21. Hill K, Model K, Ryan MT, Dietmeier K, Martin F, Wagner R, Pfanner N (1998) Tom40 forms the hydrophilic channel of the mitochondrial import pore for preproteins. Nature 395: 516-521
22. Jansch L, Kruft V, Schmitz UK, Braun HP (1998) Unique composition of the preprotein translocase of the outer mitochondrial membrane from plants. J Biol Chem 273: 17251-17257
23. Jonas-Straube E, Hutin C, Hoffmann NE, Schunemann D (2001) Functional analysis of the protein-interacting domains of chloroplast SRP43. J Biol Chem 276: 24654-24660
24. Kanaji S, Iwahashi J, Kida Y, Sakaguchl M, Mihara K (2000) Characterisation of the signal that directs TOM 20 to the mitochondrial outer membrane. J Cell Biol 151: 277-288
25. Keenan RJ, Freymann DM, Stroud RM, Walter P (2001) The signal recognition particle. Annu Rev Biochem 70: 755-775
26. Koehler CM (2000) Protein translocation pathways of the mitochondrion. FEBS Lett 476: 27-31
27. Kolesnikova OA, Entelis NS, Mireau H, Fox TD, Martin RP, Tarassov IA (2000) Suppression of mutations in mitochondrial DNA by tRNAs imported from the cytoplasm. Science 289: 1931-1933
28. Kovermann P, Truscott KN, Guiard B, Rehling P, Sepuri NB, Muller H, Jensen RE, Wagner R, Pfanner N (2002) TIM22, the essential core of the mitochondrial protein insertion complex, forms a voltage-activated and signal-gated channel. Mol Cell 9: 363-373
29. Kumar R, Marechal-Drouard L, Akama K, Small I (1996) Striking differences in mitochondrial tRNA import between different plant species. Mol Gen Genet 252: 404-411
30. Lam E, Kato N, Lawton M (2001) Programmed cell death, mitochondria and the plant hypersensitive response. Nature 411: 848-853
31. Lister R, Mowday B, Whelan J, Millar AH (2002) Zinc-dependent inter-membrane space proteins stimulate import of carrier proteins into plant mitochondria. Plant J 30: 555-566
32. Lister R, Murcha MW, Whelan J (2003) The Mitochondrial Protein Machinery of Plants database (MPIMP). Nucleic Acids Res 31: 325-327
33. Marechal-Drouard L, Weil JH, Gietrich A (1993) Transfer RNAs and transfer RNA in plants. Annu Rev Plant Physiol Plant Mol Biol 44: 13-32
34. Mascasev D, Newbigin E, Whelan J, Lithgow T (2000) How do plant mitochondria avoid importing chloroplast proteins? Components of the import apparatus Tom20 and Tom22 from Arabidopsis differ from their fungal counterparts. Plant Physiol 123: 811-816
35. Matouschek A, Pfanner N, Voos W (2000) Protein unfolding by mitochondria: the Hsp70 import motor. EMBO Rep 1: 404-410
36. Model K, Prinz T, Ruiz T, Radermacher M, Krimmer T, Kuhlbrandt W, Pfanner N, Meisinger C (2002) Protein translocase of the outer mitochondrial membrane: role of import receptors in the structural organization of the TOM complex. J Mol Biol 316: 657-666
37. Moro F, Sirrenberg C, Schneider HC, Neupert W, Brunner M (1999) The TIM17.23 preprotein translocase of mitochondria: composition and function in protein transport into the matrix. EMBO J 18: 3667-3675
38. Mumberg D, Muller R, Funk M (1994) Regulatable promoters of Saccharomyces cerevisiae: comparison of transcriptional activity and their use for heterologous expression. Nucleic Acids Res 22: 5767-5768
39. Murcha MW, Huang T, Whelan J (1999) Import of precursor proteins into mitochondria from soybean tissues during development. FEBS Lett 464: 53-59
40. Neuburger M, Rebeille F, Jourdain A, Nakamura S, Douce R (1996) Mitochondria are a major site for folate and thymidylate synthesis in plants. J Biol Chem 271: 9466-9472
41. Peeters NM, Chapron A, Giritch A, Grandjean O, Lancelin D, Lhomme T, Vivrel A, Small I (2000) Duplication and quadruplication of Arabidopsis thaliana cysteinyl- and asparaginyl-tRNA synthetase genes of organellar origin. J Mol Evol 50: 413-423
42. Pfanner N, Douglas MG, Endo T, Hoogenraad NJ, Jensen RE, Meijer M, Neupert W, Schatz G, Schmitz UK, Shore GC (1996) Uniform nomenclature for the protein transport machinery of the mitochondrial membranes. Trends Biochem Sci 21: 51-52
43. Pfanner N, Geissler A (2001) Versatility of the mitochondrial protein import machinery. Nat Rev Mol Cell Biol 2: 339-349
44. Rapaport D, Kunkele KP, Dembowski M, Ahting U, Nargang FE, Neupert W, Lill R (1998) Dynamics of the tom complex of mitochondria during binding and translocation of preproteins. Mol Cell Biol 18: 5256-5262
45. Rassow J, Dekker PJ, van Wilpe S, Meijer M, Soll J (1999) The preprotein translocase of the mitochondrial inner membrane: function and evolution. J Mol Biol 286: 105-120
46. Rehling P, Wiedemann N, Pfanner N, Truscott KN (2001) The mitochondrial import machinery for preproteins. Crit Rev Biochem Mol Biol 36: 291-336
47. Saeki K, Suzuki H, Tsuneoka M, Maeda M, Iwamoto R, Hasuwa H, Shida S, Takahashi T, Sakaguchi M, Endo T et al. (2000) Identification of mammalian Tom22 as a subunit of the preprotein translocase of the mitochondrial outer membrane. J Biol Chem 272: 31996-32002
48. Schuster W, Brennicke A (1994) The plant mitochondrial genome: physical structure, information content, RNA editing and gene migration to the nucleus. Annu Rev Plant Physiol Plant Mol Biol 45: 61-78
49. Schuster W, Wissinger B, Hiesel R, Unseld M, Gerold E, Knoop V, Marchfelder A, Binder S, Schobel W, Scheike R et al. (1991) Between DNA and protein: RNA editing in plant mitochondria. Physiol Plant 81: 437-445
50. Sherman F, Hicks J (1991) Micromanipulation and dissection of asci. Methods Enzymol 194: 21-37
51. Small I, Wintz H, Akashi K, Mireau H (1998) Two birds with one stone: genes that encode products targeted to two or more compartments. Plant Mol Biol 38: 265-277
52. Stan T, Ahting U, Dembowski M, Kunkele KP, Nussberger S, Neupert W, Rapaport D (2000) Recognition of preproteins by the isolated TOM complex of mitochondria. EMBO J 19: 4895-4902
53. Suzuki H, Maeda M, Mihara K (2002) Characterization of rat TOM70 as a receptor of the preprotein translocase of the mitochondrial outer membrane. J Cell Sci 115: 1895-1905
54. Suzuki H, Okazawa Y, Komiya T, Saeki K, Mekada E, Kitada S, Ito A, Mihara K (2000) Characterisation of rat TOM40, a central component of the preprotein translocase of the mitochondrial outer membrane. J Biol Chem 275: 37930-37936
55. Tanudji M, Sjoling S, Glaser E, Whelan J (1999) Signals required for the import and processing of the alternative oxidase into mitochondria. J Biol Chem 274: 1286-1293
56. Truscott KN, Kovermann P, Geissler A, Merlin A, Meijer M, Driessen AJ, Rassow J, Planner N, Wagner R (2001) A presequence- and voltage-sensitive channel of the mitochondrial preprotein translocase formed by TIM23. Nat Struct Biol 8: 1074-1082
57. van Wilpe S, Ryan MT, Hill K, Maarse AC, Meisinger C, Brix J, Dekker PJT, Moczko M, Wagner R, Meijer M et al. (1999) Tom22 is a multifunctional organiser of the mitochondrial preprotein translocase. Nature 401: 485-489
58. Werhahn W, Braun H-P (2002) Biochemical dissection of the mitochondrial proteome from Arabidopsis thaliana by three-dimensional gel electrophoresis. Electrophoresis 23: 640-646
59. Werhahn W, Niemeyer A, Jansch L, Kruft V, Schmitz UK, Braun H-P (2001) Purification and characterisation of the preprotein translocase of the outer mitochondrial membrane from Arabidopsis: identification of multiple forms of Tom 20. Plant Physiol 125: 943-954
60. Whelan J, Tanudji MR, Smith MK, Day DA (1996) Evidence for a link between translocation and processing during protein import into soybean mitochondria. Biochim Biophys Acta 1312: 48-54
61. Winzeler EA, Shoemaker DD, Astromoff A, Liang H, Anderson K, Andre B, Bangham R, Benito R, Boeke JD, Bussey H et al. (1999) Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285: 901-906
62. Yano M, Hoogenraad N, Terada K, Mori M (2000) Identification and functional analysis of human tom22 for protein import into mitochondria. Mol Cell Biol 20: 7205-7213
63. Zara V, Palmisano I, Rassow J, Palmieri F (2001) Biogenesis of the dicarboxylate carrier (DIC): translocation across the mitochondrial outer membrane and subsequent release from the TOM channel are membrane potential-independent. J Mol Biol 310: 965-971
64. Zhang XP, Sjoling S, Tanudji M, Somogyi L, Andreu D, Eriksson LE, Graslund A, Whelan J, Glaser E (2001) Mutagenesis and computer modelling approach to study determinants for recognition of signal peptides by the mitochondrial processing peptidase. Plant J 27: 427-438