-
1
-
-
0029781935
-
The oligonucleotide probe database
-
Alm, E. W., Oerther, D. B., Larsen, N., Stahl, D. A., Raskin, L.: The oligonucleotide probe database. Appl. Environ. Microbiol. 62, 3557-3559 (1996).
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 3557-3559
-
-
Alm, E.W.1
Oerther, D.B.2
Larsen, N.3
Stahl, D.A.4
Raskin, L.5
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., Lipman, D. J.: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402 (1997).
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0025099312
-
Fluorescentoligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
-
Amann, R. I., Krumholz, L., Stahl, D. A.: Fluorescentoligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol. 172, 762-770 (1990).
-
(1990)
J. Bacteriol.
, vol.172
, pp. 762-770
-
-
Amann, R.I.1
Krumholz, L.2
Stahl, D.A.3
-
4
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann, R. I., Ludwig, W., Schleifer, K. H.: Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59, 143-169 (1995).
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
5
-
-
0030058152
-
Selective enumeration of Bacteroides vulgatus and B. distasonis organisms in the predominant human fecal flora by using monoclonal antibodies
-
Corthier, G., Muller, M., L'Haridon, R.: Selective enumeration of Bacteroides vulgatus and B. distasonis organisms in the predominant human fecal flora by using monoclonal antibodies. Appl. Environ. Microbiol. 62, 735-738 (1996).
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 735-738
-
-
Corthier, G.1
Muller, M.2
L'Haridon, R.3
-
6
-
-
0031892290
-
Design and evaluation of a 16S rRNA-targeted oligonucleotide probe for specific detection and quantitation of human faecal Bacteroides populations
-
Doré, J., Sghir, A., Hannequart-Gramet, G., Corthier, G., Pochart, P.: Design and evaluation of a 16S rRNA-targeted oligonucleotide probe for specific detection and quantitation of human faecal Bacteroides populations. Syst. Appl. Microbiol. 21, 65-71 (1998).
-
(1998)
Syst. Appl. Microbiol.
, vol.21
, pp. 65-71
-
-
Doré, J.1
Sghir, A.2
Hannequart-Gramet, G.3
Corthier, G.4
Pochart, P.5
-
7
-
-
0001845283
-
Normal indigenous intestinal flora
-
D. J. Hentges (Ed.) New York: Academic Press
-
Finegold, S. M., Sutter, V. L., Mathisen, G. E. Normal indigenous intestinal flora, pp. 3-31. In: D. J. Hentges (Ed.) Human intestinal microflora in health and disease, New York: Academic Press, 1983.
-
(1983)
Human Intestinal Microflora in Health and Disease
, pp. 3-31
-
-
Finegold, S.M.1
Sutter, V.L.2
Mathisen, G.E.3
-
8
-
-
0031692488
-
Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes
-
Franks, A. H., Harmsen, H. J., Raangs, G. C., Jansen, G. J., Schut, F., Welling, G. W.: Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes. Appl. Environ. Microbiol. 64, 3336-3345 (1998).
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3336-3345
-
-
Franks, A.H.1
Harmsen, H.J.2
Raangs, G.C.3
Jansen, G.J.4
Schut, F.5
Welling, G.W.6
-
9
-
-
0035145060
-
In situ accessibility of Escherichia coli 23S rRNA to fluorescently labeled oligonucleotide probes
-
Fuchs, B. M., Syutsubo, K., Ludwig, W., Amann, R.: In situ accessibility of Escherichia coli 23S rRNA to fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol. 67, 961-968 (2001).
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 961-968
-
-
Fuchs, B.M.1
Syutsubo, K.2
Ludwig, W.3
Amann, R.4
-
10
-
-
0031789907
-
Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes
-
Fuchs, B. M., Wallner, G., Beisker, W., Schwippl, I., Ludwig, W., Amann, R.: Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol. 64, 4973-4982 (1998).
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4973-4982
-
-
Fuchs, B.M.1
Wallner, G.2
Beisker, W.3
Schwippl, I.4
Ludwig, W.5
Amann, R.6
-
11
-
-
0027085819
-
A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: Basis for taxonomic restructuring
-
Gherna, R., Woese, C. R.: A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring. Syst. Appl. Microbiol. 15, 513-521 (1992).
-
(1992)
Syst. Appl. Microbiol.
, vol.15
, pp. 513-521
-
-
Gherna, R.1
Woese, C.R.2
-
12
-
-
0036024611
-
Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods
-
Hayashi, H., Sakamoto, M., Benno, Y.: Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods. Microbiol Immunol 46, 535-548 (2002).
-
(2002)
Microbiol. Immunol.
, vol.46
, pp. 535-548
-
-
Hayashi, H.1
Sakamoto, M.2
Benno, Y.3
-
13
-
-
0032568620
-
Overview of gut flora and probiotics
-
Holzapfel, W. H., Haberer, P., Snel, J., Schillinger, U., Huis in't Veld, J. H.: Overview of gut flora and probiotics. Int. J. Food Microbiol. 41, 85-101 (1998).
-
(1998)
Int. J. Food Microbiol.
, vol.41
, pp. 85-101
-
-
Holzapfel, W.H.1
Haberer, P.2
Snel, J.3
Schillinger, U.4
Huis in't Veld, J.H.5
-
14
-
-
0028906052
-
Design and evaluation of Bacteroides DNA probes for the specific detection of human fecal pollution
-
Kreader, C. A.: Design and evaluation of Bacteroides DNA probes for the specific detection of human fecal pollution. Appl. Environ. Microbiol. 61, 1171-1179 (1995).
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 1171-1179
-
-
Kreader, C.A.1
-
15
-
-
0020966740
-
Degradation of steroids in the human gut
-
Macdonald, I. A., Bokkenheuser, V. D., Winter, J., McLernon, A. M., Mosbach, E. H.: Degradation of steroids in the human gut. J. Lipid. Res. 24, 675-700 (1983).
-
(1983)
J. Lipid. Res.
, vol.24
, pp. 675-700
-
-
Macdonald, I.A.1
Bokkenheuser, V.D.2
Winter, J.3
McLernon, A.M.4
Mosbach, E.H.5
-
16
-
-
0035175274
-
The RDP-II (Ribosomal database project)
-
Maidak, B. L., Cole, J. R., Lilburn, T. G., Parker Jr, C. T., Jr., Saxman, P. R., Farris, R. J., Garrity, G. M., Olsen, G. J., Schmidt, T. M., Tiedje, J. M.: The RDP-II (Ribosomal database project). Nucleic Acids Res. 29, 173-174 (2001).
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 173-174
-
-
Maidak, B.L.1
Cole, J.R.2
Lilburn, T.G.3
Parker C.T., Jr.4
Saxman, P.R.5
Farris, R.J.6
Garrity, G.M.7
Olsen, G.J.8
Schmidt, T.M.9
Tiedje, J.M.10
-
17
-
-
9344247522
-
Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment
-
Manz, W., Amann, R., Ludwig, W., Vancanneyt, M., Schleifer, K. H.: Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment. Microbiology 142, 1097-1106 (1996).
-
(1996)
Microbiology
, vol.142
, pp. 1097-1106
-
-
Manz, W.1
Amann, R.2
Ludwig, W.3
Vancanneyt, M.4
Schleifer, K.H.5
-
18
-
-
0016167941
-
Human fecal flora: The normal flora of 20 Japanese-Hawaiians
-
Moore, W. E., Holdeman, L. V.: Human fecal flora: the normal flora of 20 Japanese-Hawaiians. Appl. Microbiol. 27, 961-979 (1974).
-
(1974)
Appl. Microbiol.
, vol.27
, pp. 961-979
-
-
Moore, W.E.1
Holdeman, L.V.2
-
19
-
-
0029084396
-
Intestinal floras of populations that have a high risk of colon cancer
-
Moore, W. E., Moore, L. H.: Intestinal floras of populations that have a high risk of colon cancer. Appl. Environ. Microbiol. 61, 3202-3207. (1995).
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 3202-3207
-
-
Moore, W.E.1
Moore, L.H.2
-
20
-
-
0032984363
-
Differential induction of colitis and gastritis in HLA-B 27 transgenic rats selectively colonized with Bacteroides vulgatus or Escherichia coli
-
Rath, H. C., Wilson, K. H., Sartor, R. B.: Differential induction of colitis and gastritis in HLA-B27 transgenic rats selectively colonized with Bacteroides vulgatus or Escherichia coli. Infect. Immun. 67, 2969-2974. (1999).
-
(1999)
Infect. Immun.
, vol.67
, pp. 2969-2974
-
-
Rath, H.C.1
Wilson, K.H.2
Sartor, R.B.3
-
21
-
-
0037445321
-
Fluorescent in situ hybridisation combined with flow cytometry and hybridisation of total RNA to analyse the composition of microbial communities in human feces using 16S rRNA probes
-
in press
-
Rigottier-Gois, L., Le Bourhis, A. G., Gramet, G., Rochet, V., Doré, J.: Fluorescent in situ hybridisation combined with flow cytometry and hybridisation of total RNA to analyse the composition of microbial communities in human feces using 16S rRNA probes. FEMS Microbiol. Ecol. (in press).
-
FEMS Microbiol. Ecol.
-
-
Rigottier-Gois, L.1
Le Bourhis, A.G.2
Gramet, G.3
Rochet, V.4
Doré, J.5
-
22
-
-
2342660790
-
Functional food science and gastrointestinal physiology and function
-
Salminen, S., Bouley, C., Boutron-Ruault, M. C., Cummings, J. H., Franck, A., Gibson, G. R., Isolauri, E., Moreau, M. C., Roberfroid, M., Rowland, I.: Functional food science and gastrointestinal physiology and function. Br. J. Nutr. 80 Suppl 1, S147-171 (1998).
-
(1998)
Br. J. Nutr.
, vol.80
, Issue.SUPPL. 1
-
-
Salminen, S.1
Bouley, C.2
Boutron-Ruault, M.C.3
Cummings, J.H.4
Franck, A.5
Gibson, G.R.6
Isolauri, E.7
Moreau, M.C.8
Roberfroid, M.9
Rowland, I.10
-
23
-
-
0021156930
-
Bacteroides of the human lower intestinal tract
-
Salyers, A. A.: Bacteroides of the human lower intestinal tract. Annu. Rev. Microbiol. 38, 293-313 (1984).
-
(1984)
Annu. Rev. Microbiol.
, vol.38
, pp. 293-313
-
-
Salyers, A.A.1
-
24
-
-
0033986423
-
Quantification of different Eubacterium spp. in human fecal samples with species-specific 16S rRNA-targeted oligonucleotide probes
-
Schwiertz, A., Le Blay, G., Blaut, M.: Quantification of different Eubacterium spp. in human fecal samples with species-specific 16S rRNA-targeted oligonucleotide probes. Appl. Environ. Microbiol. 66, 375-382 (2000).
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 375-382
-
-
Schwiertz, A.1
Le Blay, G.2
Blaut, M.3
-
25
-
-
0024529810
-
Proposal to restrict the genus Bacteroides (Castellani and Chalmers) to Bacteroides fragilis and closely related species
-
Shah, H. N., Collins, D.: Proposal to restrict the genus Bacteroides (Castellani and Chalmers) to Bacteroides fragilis and closely related species. Int. J. Syst. Bacteriol. 39, 85-87 (1989).
-
(1989)
Int. J. Syst. Bacteriol.
, vol.39
, pp. 85-87
-
-
Shah, H.N.1
Collins, D.2
-
26
-
-
0027276094
-
Ecophysiology and taxonomy of Bacteroides and related taxa
-
Shah, H. N., Gharbia, S. E.: Ecophysiology and taxonomy of Bacteroides and related taxa. Clin. Infect. Dis. 16 Suppl 4, S160-S167 (1993).
-
(1993)
Clin. Infect. Dis.
, vol.16
, Issue.SUPPL. 4
-
-
Shah, H.N.1
Gharbia, S.E.2
-
27
-
-
0032755259
-
Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
-
Suau, A., Bonnet, R., Sutren, M., Godon, J. J., Gibson, G. R., Collins, M. D., Doré, J.: Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl. Environ. Microbiol. 65, 4799-4807 (1999).
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 4799-4807
-
-
Suau, A.1
Bonnet, R.2
Sutren, M.3
Godon, J.J.4
Gibson, G.R.5
Collins, M.D.6
Doré, J.7
-
28
-
-
0034129592
-
Analysis of the fecal microflora of human subjects consuming a probiotic product containing Lactobacillus rhamnosus DR 20
-
Tannock, G. W., Munro, K., Harmsen, H. J., Welling, G. W., Smart, J., Gopal, P. K.: Analysis of the fecal microflora of human subjects consuming a probiotic product containing Lactobacillus rhamnosus DR20. Appl. Environ. Microbiol. 66, 2578-2588 (2000).
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2578-2588
-
-
Tannock, G.W.1
Munro, K.2
Harmsen, H.J.3
Welling, G.W.4
Smart, J.5
Gopal, P.K.6
-
29
-
-
0027339723
-
Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms
-
Wallner, G., Amann, R., Beisker, W.: Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 14, 136-143 (1993).
-
(1993)
Cytometry
, vol.14
, pp. 136-143
-
-
Wallner, G.1
Amann, R.2
Beisker, W.3
-
30
-
-
0029881547
-
PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples
-
Wang, R. F., Cao, W. W., Cerniglia, C. E.: PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples. Appl. Environ. Microbiol. 62, 1242-1247 (1996).
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 1242-1247
-
-
Wang, R.F.1
Cao, W.W.2
Cerniglia, C.E.3
-
31
-
-
0343570513
-
16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum Cytophaga-Flavobacterium-Bacteroides
-
Weller, R., Glockner, F. O., Amann, R.: 16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum Cytophaga-Flavobacterium-Bacteroides. Syst. Appl. Microbiol. 23, 107-114 (2000).
-
(2000)
Syst. Appl. Microbiol.
, vol.23
, pp. 107-114
-
-
Weller, R.1
Glockner, F.O.2
Amann, R.3
-
32
-
-
0029900986
-
Human colonic biota studied by ribosomal DNA sequence analysis
-
Wilson, K. H., Blitchington, R. B.: Human colonic biota studied by ribosomal DNA sequence analysis. Appl. Environ. Microbiol. 62, 2273-2278 (1996).
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 2273-2278
-
-
Wilson, K.H.1
Blitchington, R.B.2
-
33
-
-
0036729237
-
Quantification of uncultured Ruminococcus obeum-like bacteria in human fecal samples by fluorescent in situ hybridization and flow cytometry using 16S rRNA-targeted probes
-
Zoetendal, E. G., Ben-Amor, K., Harmsen, H. J., Schut, F., Akkermans, A. D., de Vos, W. M.: Quantification of uncultured Ruminococcus obeum-like bacteria in human fecal samples by fluorescent in situ hybridization and flow cytometry using 16S rRNA-targeted probes. Appl. Environ. Microbiol. 68, 4225-4232. (2002).
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 4225-4232
-
-
Zoetendal, E.G.1
Ben-Amor, K.2
Harmsen, H.J.3
Schut, F.4
Akkermans, A.D.5
De Vos, W.M.6
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