-
1
-
-
0030986177
-
Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement
-
Adams PD, Pannu NS, Read RJ, Brunger AT (1997) Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement. Proc Natl Acad Sci USA 94:5018-5023
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 5018-5023
-
-
Adams, P.D.1
Pannu, N.S.2
Read, R.J.3
Brunger, A.T.4
-
2
-
-
0030917013
-
The three-dimensional structure of an H-2Ld-peptide complex explains the unique interaction of Ld with beta-2 microglobulin and peptide
-
Balendiran GK, Solheim JC, Young AC, Hansen TH, Nathenson SG, Sacchettini JC (1997) The three-dimensional structure of an H-2Ld-peptide complex explains the unique interaction of Ld with beta-2 microglobulin and peptide. Proc Natl Acad Sci U S A 94:6880-6885
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 6880-6885
-
-
Balendiran, G.K.1
Solheim, J.C.2
Young, A.C.3
Hansen, T.H.4
Nathenson, S.G.5
Sacchettini, J.C.6
-
3
-
-
0031089808
-
Nomenclature for factors of the HLA System, 1996
-
Bodmer JG, Marsh SG, Albert ED, Bodmer WF, Bontrop RE, Charron D, Dupont B, Erlich HA, Fauchet R, Mach B, Mayr WR, Parham P, Sasazuki T, Schreuder GM, Strominger JL, Svejgaard A, Terasaki PI (1997) Nomenclature for factors of the HLA System, 1996. Hum Immunol 53:98-128
-
(1997)
Hum Immunol
, vol.53
, pp. 98-128
-
-
Bodmer, J.G.1
Marsh, S.G.2
Albert, E.D.3
Bodmer, W.F.4
Bontrop, R.E.5
Charron, D.6
Dupont, B.7
Erlich, H.A.8
Fauchet, R.9
Mach, B.10
Mayr, W.R.11
Parham, P.12
Sasazuki, T.13
Schreuder, G.M.14
Strominger, J.L.15
Svejgaard, A.16
Terasaki, P.I.17
-
5
-
-
0034907526
-
MHC class I molecules can direct proteolytic cleavage of antigenic precursors in the endoplasmic reticulum
-
Brouwenstijn N, Serwold T, Shastri N (2001) MHC class I molecules can direct proteolytic cleavage of antigenic precursors in the endoplasmic reticulum. Immunity 15:95-104
-
(2001)
Immunity
, vol.15
, pp. 95-104
-
-
Brouwenstijn, N.1
Serwold, T.2
Shastri, N.3
-
6
-
-
0026488424
-
Endogenous peptides of a soluble major histocompatibility complex class I molecule, H-2Lds: Sequence motif, quantitative binding, and molecular modeling of the complex
-
Corr M, Boyd LF, Frankel SR, Kozlowski S, Padlan EA, Margulies DH (1992) Endogenous peptides of a soluble major histocompatibility complex class I molecule, H-2Lds: sequence motif, quantitative binding, and molecular modeling of the complex. J Exp Med 176:1681-1692
-
(1992)
J Exp Med
, vol.176
, pp. 1681-1692
-
-
Corr, M.1
Boyd, L.F.2
Frankel, S.R.3
Kozlowski, S.4
Padlan, E.A.5
Margulies, D.H.6
-
7
-
-
0027983037
-
Convergent evolution: The need to be explicit
-
Doolittle RF (1994) Convergent evolution: the need to be explicit. Trends Biochem Sci 19:15-18
-
(1994)
Trends Biochem Sci
, vol.19
, pp. 15-18
-
-
Doolittle, R.F.1
-
8
-
-
0033957425
-
Conserved MHC class I peptide binding motif between humans and rhesus macaques
-
Dzuris JL, Sidney J, Appella E, Chesnut RW, Watkins DI, Sette A (2000) Conserved MHC class I peptide binding motif between humans and rhesus macaques. J Immunol 164:283-291
-
(2000)
J Immunol
, vol.164
, pp. 283-291
-
-
Dzuris, J.L.1
Sidney, J.2
Appella, E.3
Chesnut, R.W.4
Watkins, D.I.5
Sette, A.6
-
9
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
10
-
-
0028038426
-
MHC-dependent antigen processing and peptide presentation: Providing ligands for T lymphocyte activation
-
Germain RN (1994) MHC-dependent antigen processing and peptide presentation: providing ligands for T lymphocyte activation. Cell 76:287-299
-
(1994)
Cell
, vol.76
, pp. 287-299
-
-
Germain, R.N.1
-
12
-
-
0029088874
-
Natural selection on the peptide-binding regions of major histocompatibility complex molecules
-
Hughes AL, Hughes MK (1995) Natural selection on the peptide-binding regions of major histocompatibility complex molecules. Immunogenetics 42:233-243
-
(1995)
Immunogenetics
, vol.42
, pp. 233-243
-
-
Hughes, A.L.1
Hughes, M.K.2
-
13
-
-
0023764283
-
Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection
-
Hughes AL, Nei M (1988) Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335:167-170
-
(1988)
Nature
, vol.335
, pp. 167-170
-
-
Hughes, A.L.1
Nei, M.2
-
14
-
-
0027461057
-
Contrasting roles of interallelic recombination at the HLA-A and HLA-B loci
-
Hughes AL, Hughes MK, Watkins DI (1993) Contrasting roles of interallelic recombination at the HLA-A and HLA-B loci. Genetics 133:669-680
-
(1993)
Genetics
, vol.133
, pp. 669-680
-
-
Hughes, A.L.1
Hughes, M.K.2
Watkins, D.I.3
-
15
-
-
0033882792
-
A HER2/NEU-derived peptide, a K(d)-restricted murine tumor rejection antigen, induces HER2-specific HLA-A2402-restricted CD8(+) cytotoxic T lymphocytes
-
Ikuta Y, Okugawa T, Furugen R, Nagata Y, Takahashi Y, Wang L, Ikeda H, Watanabe M, Imai S, Shiku H (2000) A HER2/NEU-derived peptide, a K(d)-restricted murine tumor rejection antigen, induces HER2-specific HLA-A2402-restricted CD8(+) cytotoxic T lymphocytes. Int J Cancer 87:553-558
-
(2000)
Int J Cancer
, vol.87
, pp. 553-558
-
-
Ikuta, Y.1
Okugawa, T.2
Furugen, R.3
Nagata, Y.4
Takahashi, Y.5
Wang, L.6
Ikeda, H.7
Watanabe, M.8
Imai, S.9
Shiku, H.10
-
16
-
-
84889120137
-
Improved methods for binding protein models in electron density maps and the location of errors in these models
-
Jones TA, Zou JY, Cowan SW, Kjeldgaard (1991) Improved methods for binding protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 47:110-119
-
(1991)
Acta Crystallogr A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard4
-
18
-
-
84963036271
-
Quantitative phyletics and the evolution of anurans
-
Kluge A, Farris J (1969) Quantitative phyletics and the evolution of anurans. Syst Zool 18:1-32
-
(1969)
Syst Zool
, vol.18
, pp. 1-32
-
-
Kluge, A.1
Farris, J.2
-
19
-
-
0028807964
-
Prominent roles of secondary anchor residues in peptide binding to HLA-A24 human class I molecules
-
Kondo A, Sidney J, Southwood S, Guercio MF del, Appella E, Sakamoto H, Celis E, Grey HM, Chesnut RW, Kubo RT, Sette A (1995) Prominent roles of secondary anchor residues in peptide binding to HLA-A24 human class I molecules. J Immunol 155:4307-4312
-
(1995)
J Immunol
, vol.155
, pp. 4307-4312
-
-
Kondo, A.1
Sidney, J.2
Southwood, S.3
Del Guercio, M.F.4
Appella, E.5
Sakamoto, H.6
Celis, E.7
Grey, H.M.8
Chesnut, R.W.9
Kubo, R.T.10
Sette, A.11
-
20
-
-
0034066528
-
Convergent evolution of major histocompatibility complex molecules in humans and New World monkeys
-
Kriener K, O'hUigin C, Tichy H, Klein J (2000) Convergent evolution of major histocompatibility complex molecules in humans and New World monkeys. Immunogenetics 51:169-178
-
(2000)
Immunogenetics
, vol.51
, pp. 169-178
-
-
Kriener, K.1
O'hUigin, C.2
Tichy, H.3
Klein, J.4
-
21
-
-
0032580152
-
A molecular timescale for vertebrate evolution
-
Kumar S, Hedges SB (1998) A molecular timescale for vertebrate evolution. Nature 392:917-920
-
(1998)
Nature
, vol.392
, pp. 917-920
-
-
Kumar, S.1
Hedges, S.B.2
-
22
-
-
0028943275
-
The three-dimensional structure of peptide-MHC complexes
-
Madden DR (1995) The three-dimensional structure of peptide-MHC complexes. Annu Rev Immunol 13:587-622
-
(1995)
Annu Rev Immunol
, vol.13
, pp. 587-622
-
-
Madden, D.R.1
-
23
-
-
0034665104
-
Nonstandard peptide binding revealed by crystal structures of HLA- B*5101 complexed with HIV immunodominant epitopes
-
Maenaka K, Maenaka T, Tomiyama H, Takiguchi M, Stuart DI, Jones EY (2000) Nonstandard peptide binding revealed by crystal structures of HLA- B*5101 complexed with HIV immunodominant epitopes. J Immunol 165:3260-3267
-
(2000)
J Immunol
, vol.165
, pp. 3260-3267
-
-
Maenaka, K.1
Maenaka, T.2
Tomiyama, H.3
Takiguchi, M.4
Stuart, D.I.5
Jones, E.Y.6
-
24
-
-
0034668002
-
Identification of five different Patr class I molecules that bind HLA supertype peptides and definition of their peptide binding motifs
-
McKinney DM, Erickson AL, Walker CM, Thimme R, Chisari FV, Sidney J, Sette A (2000a) Identification of five different Patr class I molecules that bind HLA supertype peptides and definition of their peptide binding motifs. J Immunol 165:4414-4422
-
(2000)
J Immunol
, vol.165
, pp. 4414-4422
-
-
McKinney, D.M.1
Erickson, A.L.2
Walker, C.M.3
Thimme, R.4
Chisari, F.V.5
Sidney, J.6
Sette, A.7
-
25
-
-
0034599886
-
Characterization of an in situ IFN-gamma ELISA assay which is able to detect specific peptide responses from freshly isolated splenocytes induced by DNA minigene immunization
-
McKinney DM, Skvoretz R, Qin M, Ishioka G, Sette A (2000b) Characterization of an in situ IFN-gamma ELISA assay which is able to detect specific peptide responses from freshly isolated splenocytes induced by DNA minigene immunization. J Immunol Methods 237:105-117
-
(2000)
J Immunol Methods
, vol.237
, pp. 105-117
-
-
McKinney, D.M.1
Skvoretz, R.2
Qin, M.3
Ishioka, G.4
Sette, A.5
-
26
-
-
0030589236
-
Analysis of cytotoxic T-cell responses to dominant and subdominant epitopes during acute and chronic lymphocytic choriomeningitis virus infection
-
Most RG van der, Sette A, Oseroff C, Alexander J, Murali-Krishna K, Lau LL, Southwood S, Sidney J, Chesnut RW, Matloubian M, Ahmed R (1996) Analysis of cytotoxic T-cell responses to dominant and subdominant epitopes during acute and chronic lymphocytic choriomeningitis virus infection. J Immunol 157:5543-5554
-
(1996)
J Immunol
, vol.157
, pp. 5543-5554
-
-
Van Der Most, R.G.1
Sette, A.2
Oseroff, C.3
Alexander, J.4
Murali-Krishna, K.5
Lau, L.L.6
Southwood, S.7
Sidney, J.8
Chesnut, R.W.9
Matloubian, M.10
Ahmed, R.11
-
27
-
-
0032484298
-
Identification of Db- and Kb-restricted subdominant cytotoxic T-cell responses in lymphocytic choriomeningitis virus-infected mice
-
Most RG van der, Murali-Krishna K, Whitton JL, Oseroff C, Alexander J, Southwood S, Sidney J, Chesnut RW, Sette A, Ahmed R (1998) Identification of Db- and Kb-restricted subdominant cytotoxic T-cell responses in lymphocytic choriomeningitis virus-infected mice. Virology 240:158-167
-
(1998)
Virology
, vol.240
, pp. 158-167
-
-
Van Der Most, R.G.1
Murali-Krishna, K.2
Whitton, J.L.3
Oseroff, C.4
Alexander, J.5
Southwood, S.6
Sidney, J.7
Chesnut, R.W.8
Sette, A.9
Ahmed, R.10
-
29
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls A, Sharp KA, Honig B (1991) Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11:281-296
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
30
-
-
0033452325
-
The specificity of proteasomes: Impact on MHC class I processing and presentation of antigens
-
Niedermann G, Geier E, Lucchiari-Hartz M, Hitziger N, Ramsperger A, Eichmann K (1999) The specificity of proteasomes: impact on MHC class I processing and presentation of antigens. Immunol Rev 172:29-48
-
(1999)
Immunol Rev
, vol.172
, pp. 29-48
-
-
Niedermann, G.1
Geier, E.2
Lucchiari-Hartz, M.3
Hitziger, N.4
Ramsperger, A.5
Eichmann, K.6
-
31
-
-
0028685674
-
The rise and fall of great class I genes
-
Parham P (1994) The rise and fall of great class I genes. Semin Immunol 6:373-382
-
(1994)
Semin Immunol
, vol.6
, pp. 373-382
-
-
Parham, P.1
-
32
-
-
0023155210
-
Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes
-
Ponder JW, Richards FM (1987) Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes. J Mol Biol 193:775-791
-
(1987)
J Mol Biol
, vol.193
, pp. 775-791
-
-
Ponder, J.W.1
Richards, F.M.2
-
33
-
-
0033388725
-
SYFPEITHI: Database for MHC ligands and peptide motifs
-
Rammensee H, Bachmann J, Emmerich NP, Bachor OA, Stevanovic S (1999) SYFPEITHI: database for MHC ligands and peptide motifs. Immunogenetics 50:213-219
-
(1999)
Immunogenetics
, vol.50
, pp. 213-219
-
-
Rammensee, H.1
Bachmann, J.2
Emmerich, N.P.3
Bachor, O.A.4
Stevanovic, S.5
-
35
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
36
-
-
0025831493
-
Refined structure of the human histocompatibility antigen HLA-A2 at 2.6 A resolution
-
Saper MA, Bjorkman PJ, Wiley DC (1991) Refined structure of the human histocompatibility antigen HLA-A2 at 2.6 A resolution. J Mol Biol 219:277-319
-
(1991)
J Mol Biol
, vol.219
, pp. 277-319
-
-
Saper, M.A.1
Bjorkman, P.J.2
Wiley, D.C.3
-
37
-
-
0032146234
-
HLA supertypes and supermotifs: A functional perspective on HLA polymorphism
-
Sette A, Sidney J (1998) HLA supertypes and supermotifs: a functional perspective on HLA polymorphism. Curr Opin Immunol 10:478-482
-
(1998)
Curr Opin Immunol
, vol.10
, pp. 478-482
-
-
Sette, A.1
Sidney, J.2
-
38
-
-
0033388724
-
Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism
-
Sette A, Sidney J (1999) Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism. Immunogenetics 50:201-212
-
(1999)
Immunogenetics
, vol.50
, pp. 201-212
-
-
Sette, A.1
Sidney, J.2
-
39
-
-
0028106321
-
Peptide binding to the most frequent HLA-A class I alleles meassured by quantitative molecular binding assays
-
Sette A, Sidney J, Guercio M del, Southwood S, Ruppert J, Dahlberg C, Grey HM, Kubo RT (1994) Peptide binding to the most frequent HLA-A class I alleles meassured by quantitative molecular binding assays. Mol Immunol 31:813-822
-
(1994)
Mol Immunol
, vol.31
, pp. 813-822
-
-
Sette, A.1
Sidney, J.2
Del Guercio, M.3
Southwood, S.4
Ruppert, J.5
Dahlberg, C.6
Grey, H.M.7
Kubo, R.T.8
-
40
-
-
0030587791
-
Specificity and degeneracy in peptide binding to HLA-B7-like class I molecules
-
Sidney J, Southwood S, Guercio MF del, Grey HM, Chesnut RW, Kubo RT, Sette A (1996) Specificity and degeneracy in peptide binding to HLA-B7-like class I molecules. J Immunol 157:3480-3490
-
J Immunol
, vol.157
, pp. 3480-3490
-
-
Sidney, J.1
Southwood, S.2
Del Guercio, M.F.3
Grey, H.M.4
Chesnut, R.W.5
Kubo, R.T.6
Sette, A.7
-
41
-
-
0003051649
-
Measurement of MHC/peptide interactions by gel filtration
-
Sidney J, Southwood S, Oseroff C, Guercio M-F del, Grey HM, Sette A (1998) Measurement of MHC/peptide interactions by gel filtration. Curr Protocols Immunol 18:18.3.2-18.3.19
-
(1998)
Curr Protocols Immunol
, vol.18
, pp. 1832-18319
-
-
Sidney, J.1
Southwood, S.2
Oseroff, C.3
Del Guercio, M.-F.4
Grey, H.M.5
Sette, A.6
-
42
-
-
0029969665
-
Bound water structure and polymorphic amino acids act together to allow the binding of different peptides to MHC class I HLA-B53
-
Smith KJ, Reid SW, Harlos K, McMichael AJ, Stuart DI, Bell JI, Jones EY (1996a) Bound water structure and polymorphic amino acids act together to allow the binding of different peptides to MHC class I HLA-B53. Immunity 4:215-228
-
(1996)
Immunity
, vol.4
, pp. 215-228
-
-
Smith, K.J.1
Reid, S.W.2
Harlos, K.3
McMichael, A.J.4
Stuart, D.I.5
Bell, J.I.6
Jones, E.Y.7
-
43
-
-
0029965954
-
An altered position of the alpha 2 helix of MHC class I is revealed by the crystal structure of HLA-B*3501
-
Smith KJ, Reid SW, Stuart DI, McMichael AJ, Jones EY, Bell JI (1996b) An altered position of the alpha 2 helix of MHC class I is revealed by the crystal structure of HLA-B*3501. Immunity 4:203-213
-
(1996)
Immunity
, vol.4
, pp. 203-213
-
-
Smith, K.J.1
Reid, S.W.2
Stuart, D.I.3
McMichael, A.J.4
Jones, E.Y.5
Bell, J.I.6
-
45
-
-
0035284750
-
Gorillas with spondyloarthropathies express an MHC class I molecule with only limited sequence similarity to HLA-B27 that binds peptides with arginine at P2
-
Urvater JA, Hickman H, Dzuris JL, Prilliman K, Allen TM, Schwartz KJ, Lorentzen D, Shufflebotham C, Collins EJ, Neiffer DL, Raphael B, Hildebrand W, Sette A, Watkins DI (2001) Gorillas with spondyloarthropathies express an MHC class I molecule with only limited sequence similarity to HLA-B27 that binds peptides with arginine at P2. J Immunol 166:3334-3344
-
(2001)
J Immunol
, vol.166
, pp. 3334-3344
-
-
Urvater, J.A.1
Hickman, H.2
Dzuris, J.L.3
Prilliman, K.4
Allen, T.M.5
Schwartz, K.J.6
Lorentzen, D.7
Shufflebotham, C.8
Collins, E.J.9
Neiffer, D.L.10
Raphael, B.11
Hildebrand, W.12
Sette, A.13
Watkins, D.I.14
-
46
-
-
0032900108
-
Major histocompatibility complex class I genes in primates: Co-evolution with pathogens
-
Vogel TU, Evans DT, Urvater JA, O'Connor DH, Hughes AL, Watkins DI (1999) Major histocompatibility complex class I genes in primates: co-evolution with pathogens. Immunol Rev 167:327-337
-
(1999)
Immunol Rev
, vol.167
, pp. 327-337
-
-
Vogel, T.U.1
Evans, D.T.2
Urvater, J.A.3
O'Connor, D.H.4
Hughes, A.L.5
Watkins, D.I.6
-
47
-
-
0030030853
-
Differences and similarities in the A2.1-restricted cytotoxic T cell repertoire in humans and human leukocyte antigen-transgenic mice
-
Wentworth PA, Vitiello A, Sidney J, Keogh E, Chesnut RW, Grey H, Sette A (1996) Differences and similarities in the A2.1-restricted cytotoxic T cell repertoire in humans and human leukocyte antigen-transgenic mice. Eur J Immunol 26:97-101
-
(1996)
Eur J Immunol
, vol.26
, pp. 97-101
-
-
Wentworth, P.A.1
Vitiello, A.2
Sidney, J.3
Keogh, E.4
Chesnut, R.W.5
Grey, H.6
Sette, A.7
-
48
-
-
0032930360
-
Evolution of the mammalian MHC: Natural selection, recombination, and convergent evolution
-
Yeager M, Hughes AL (1999) Evolution of the mammalian MHC: natural selection, recombination, and convergent evolution. Immunol Rev 167:45-58
-
(1999)
Immunol Rev
, vol.167
, pp. 45-58
-
-
Yeager, M.1
Hughes, A.L.2
-
49
-
-
0030928032
-
Sequence convergence in the peptide-binding region of primate and rodent MHC class Ib molecules
-
Yeager M, Kumar S, Hughes AL (1997) Sequence convergence in the peptide-binding region of primate and rodent MHC class Ib molecules. Mol Biol Evol 14:1035-1041
-
(1997)
Mol Biol Evol
, vol.14
, pp. 1035-1041
-
-
Yeager, M.1
Kumar, S.2
Hughes, A.L.3
|