Kleisins: A superfamily of bacterial and eukaryotic SMC protein partners

Molecular Cell

Volumn 11, Issue 3, 2003, Pages 571-575

  Schleiffer, Alexander ^a   Kaitna, Susanne ^a   Maurer Stroh, Sebastian ^a   Glotzer, Michael ^a   Nasmyth, Kim ^a   Eisenhaber, Frank ^a  

^a RESEARCH INSTITUTE OF MOLECULAR PATHOLOGY   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CHROMOSOME PROTEIN; KLEISIN ALPHA; KLEISIN GAMMA; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIUM; CARBOXY TERMINAL SEQUENCE; CROSS LINKING; EUKARYOTE; NONHUMAN; NUCLEOTIDE SEQUENCE; PROKARYOTE; PROTEIN DNA BINDING; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE;

BACTERIA (MICROORGANISMS); EUKARYOTA; PROKARYOTA;

EID: 0037351555     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1097-2765(03)00108-4     Document Type: Article

References (27)

1. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST. a new generation of protein database search programs Nucleic Acids Res. 25:1997;3389-3402.
2. Britton R.A., Lin D.C., Grossman A.D. Characterization of a prokaryotic SMC protein involved in chromosome partitioning. Genes Dev. 12:1998;1254-1259.
3. Ciosk R., Shirayama M., Shevchenko A., Tanaka T., Toth A., Nasmyth K. Cohesin's binding to chromosomes depends on a separate complex consisting of Scc2 and Scc4 proteins. Mol. Cell. 5:2000;243-254.
4. Dong F., Cai X., Makaroff C.A. Cloning and characterization of two Arabidopsis genes that belong to the RAD21/REC8 family of chromosome cohesin proteins. Gene. 271:2001;99-108.
5. Gruber S., Haering C.H., Nasmyth K. Chromosomal cohesin forms a ring. Cell. 112:2003;765-777.
6. Haering C.H., Lowe J., Hochwagen A., Nasmyth K. Molecular architecture of SMC proteins and the yeast cohesin complex. Mol. Cell. 9:2002;773-788.
7. Hirano T. The ABCs of SMC proteins. two-armed ATPases for chromosome condensation, cohesion, and repair Genes Dev. 16:2002;399-414.
8. Hirano M., Hirano T. Hinge-mediated dimerization of SMC protein is essential for its dynamic interaction with DNA. EMBO J. 21:2002;5733-5744.
9. Hirano T., Kobayashi R., Hirano M. Condensins, chromosome condensation protein complexes containing XCAP-C, XCAP-E and a Xenopus homolog of the Drosophila Barren protein. Cell. 89:1997;511-521.
10. Jensen R.B., Shapiro L. The Caulobacter crescentus smc gene is required for cell cycle progression and chromosome segregation. Proc. Natl. Acad. Sci. USA. 96:1999;10661-10666.
11. Jessberger R. The many functions of SMC proteins in chromosome dynamics. Nat. Rev. Mol. Cell Biol. 3:2002;767-778.
12. Jones S., Sgouros J. The cohesin complex. sequence homologies, interaction networks and shared motifs Genome Biol. 2:2001;9-12.
13. Kaitna S., Pasierbek P., Jantsch M., Loidl J., Glotzer M. The aurora B kinase AIR-2 regulates kinetochores during mitosis and is required for separation of homologous chromosomes during meiosis. Curr. Biol. 12:2002;798-812.
14. Koonin E.V., Mushegian A.R., Bork P. Non-orthologous gene displacement. Trends Genet. 12:1996;334-336.
15. Lieb J.D., Capowski E.E., Meneely P., Meyer B.J. DPY-26, a link between dosage compensation and meiotic chromosome segregation in the nematode. Science. 274:1996;1732-1736.
16. Marchler-Bauer A., Panchenko A.R., Shoemaker B.A., Thiessen P.A., Geer L.Y., Bryant S.H. Cdd. a database of conserved domain alignments with links to domain three-dimensional structure Nucleic Acids Res. 30:2002;281-283.
17. Mascarenhas J., Soppa J., Strunnikov A.V., Graumann P.L. Cell cycle-dependent localization of two novel prokaryotic chromosome segregation and condensation proteins in Bacillus subtilis that interact with SMC protein. EMBO J. 21:2002;3108-3118.
18. Melby T.E., Ciampaglio C.N., Briscoe G., Erickson H.P. The symmetrical structure of structural maintenance of chromosomes (SMC) and MukB proteins. long, antiparallel coiled coils, folded at a flexible hinge J. Cell Biol. 142:1998;1595-1604.
19. Nasmyth K. Segregating sister genomes. the molecular biology of chromosome separation Science. 297:2002;559-565.
20. Rost B. Phd. predicting one-dimensional protein structure by profile-based neural networks Methods Enzymol. 266:1996;525-539.
21. Soppa J. Prokaryotic structural maintenance of chromosomes (SMC) proteins. distribution, phylogeny, and comparison with MukBs and additional prokaryotic and eukaryotic coiled-coil proteins Gene. 278:2001;253-264.
22. Soppa J., Kobayashi K., Noirot-Gros M.F., Oesterhelt D., Ehrlich S.D., Dervyn E., Ogasawara N., Moriya S. Discovery of two novel families of proteins that are proposed to interact with prokaryotic SMC proteins, and characterization of the Bacillus subtilis family members ScpA and ScpB. Mol. Microbiol. 45:2002;59-71.
23. Tanaka T., Cosma M.P., Wirth K., Nasmyth K. Identification of cohesin association sites at centromeres and along chromosome arms. Cell. 98:1999;847-858.
24. Tatusov R.L., Natale D.A., Garkavtsev I.V., Tatusova T.A., Shankavaram U.T., Rao B.S., Kiryutin B., Galperin M.Y., Fedorova N.D., Koonin E.V. The COG database. new developments in phylogenetic classification of proteins from complete genomes Nucleic Acids Res. 29:2001;22-28.
25. Wildpaner M., Schneider G., Schleiffer A., Eisenhaber F. Taxonomy workbench. Bioinformatics. 17:2001;1179-1182.
26. Wootton J.C., Federhen S. Analysis of compositionally biased regions in sequence databases. Methods Enzymol. 266:1996;554-571.
27. Yamazoe M., Onogi T., Sunako Y., Niki H., Yamanaka K., Ichimura T., Hiraga S. Complex formation of MukB, MukE and MukF proteins involved in chromosome partitioning in Escherichia coli. EMBO J. 18:1999;5873-5884.