-
1
-
-
0022477409
-
DNA bending at adenine-thymine tracts
-
Koo,H.-S., Wu,H.-M. and Crothers,D.M. (1986) DNA bending at adenine-thymine tracts. Nature, 320, 501-506.
-
(1986)
Nature
, vol.320
, pp. 501-506
-
-
Koo, H.-S.1
Wu, H.-M.2
Crothers, D.M.3
-
2
-
-
0023666166
-
The unusual conformation adopted by the adenine tracts in kinetoplast DNA
-
Burkhoff,A.M. and Tullius,T.D. (1987) The unusual conformation adopted by the adenine tracts in kinetoplast DNA. Cell, 48, 935-943.
-
(1987)
Cell
, vol.48
, pp. 935-943
-
-
Burkhoff, A.M.1
Tullius, T.D.2
-
3
-
-
0023513912
-
The structure of an oligo(dA)-oligo(dT) tract and its biological implications
-
Nelson,H.C.M., Finch,J.T., Bonaventura,F.L. and Klug,A. (1987) The structure of an oligo(dA)-oligo(dT) tract and its biological implications. Nature, 330, 221-226.
-
(1987)
Nature
, vol.330
, pp. 221-226
-
-
Nelson, H.C.M.1
Finch, J.T.2
Bonaventura, F.L.3
Klug, A.4
-
4
-
-
0035830968
-
Solution structure of an A-tract bend
-
MacDonald,D., Herbert,K., Zhang,X., Polgruto,T. and Lu,P. (2001) Solution structure of an A-tract bend. J. Mol. Biol., 306, 1081-1098.
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 1081-1098
-
-
MacDonald, D.1
Herbert, K.2
Zhang, X.3
Polgruto, T.4
Lu, P.5
-
5
-
-
0001415964
-
The pitch of chromatin DNA is reflected in its nucleotide sequence
-
Trifonov,E.N. and Sussman,J.L. (1980) The pitch of chromatin DNA is reflected in its nucleotide sequence. Proc. Natl Acad. Sci. USA, 77, 3816-3820.
-
(1980)
Proc. Natl. Acad. Sci. USA
, vol.77
, pp. 3816-3820
-
-
Trifonov, E.N.1
Sussman, J.L.2
-
6
-
-
0021268779
-
The locus of sequence-directed and protein-induced DNA bending
-
Wu,H.-M. and Crothers,D.M. (1984) The locus of sequence-directed and protein-induced DNA bending. Nature, 308, 509-513.
-
(1984)
Nature
, vol.308
, pp. 509-513
-
-
Wu, H.-M.1
Crothers, D.M.2
-
8
-
-
0032499635
-
The B-DNA dodecamer at high resolution reveals a spine of water on sodium
-
Shui,X., McFail-Isom,L., Hu,G.G. and Williams,L.D. (1998) The B-DNA dodecamer at high resolution reveals a spine of water on sodium. Biochemistry, 37, 8341-8355.
-
(1998)
Biochemistry
, vol.37
, pp. 8341-8355
-
-
Shui, X.1
McFail-Isom, L.2
Hu, G.G.3
Williams, L.D.4
-
9
-
-
0032387836
-
Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations
-
Shui,X., Sines,C.C., McFail-Isom,L., VanDerveer,D. and Williams,L.D. (1998) Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations. Biochemistry, 37, 16877-16887.
-
(1998)
Biochemistry
, vol.37
, pp. 16877-16887
-
-
Shui, X.1
Sines, C.C.2
McFail-Isom, L.3
VanDerveer, D.4
Williams, L.D.5
-
10
-
-
0034005285
-
Monovalent cations sequester within the A-tract minor groove of [d(CGCGAATTCGCG)]2
-
Kruger Woods,K., McFail-Isom,L., Sines,C.C., Howerton,S.B., Stephens,R.K. and Williams,L.D. (2000) Monovalent cations sequester within the A-tract minor groove of [d(CGCGAATTCGCG)]2. J. Am. Chem. Soc., 122, 1546-1547.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 1546-1547
-
-
Kruger Woods, K.1
McFail-Isom, L.2
Sines, C.C.3
Howerton, S.B.4
Stephens, R.K.5
Williams, L.D.6
-
11
-
-
0034669632
-
Cations mediate B-DNA conformational heterogeneity
-
Sines,C.C., McFail-Isom,L., Howerton,S.B., VanDerveer,D. and Williams,L.D. (2000) Cations mediate B-DNA conformational heterogeneity. J. Am. Chem. Soc., 122, 11048-11056.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 11048-11056
-
-
Sines, C.C.1
McFail-Isom, L.2
Howerton, S.B.3
VanDerveer, D.4
Williams, L.D.5
-
12
-
-
0035964383
-
Locating monovalent cations in the grooves of B-DNA
-
Howerton,S.B., Sines,C.C., VanDerveer,D. and Williams,L.D. (2001) Locating monovalent cations in the grooves of B-DNA. Biochemistry, 40, 10023-10031.
-
(2001)
Biochemistry
, vol.40
, pp. 10023-10031
-
-
Howerton, S.B.1
Sines, C.C.2
VanDerveer, D.3
Williams, L.D.4
-
13
-
-
0033594498
-
A 'hydrat-ion' spine in a B-DNA minor groove
-
Tereshko,V., Minasov,G. and Egli,M. (1999) A 'hydrat-ion' spine in a B-DNA minor groove. J. Am. Chem. Soc., 121, 3590-3595.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 3590-3595
-
-
Tereshko, V.1
Minasov, G.2
Egli, M.3
-
14
-
-
0030763137
-
Localization of divalent metal ions in the minor groove of DNA A-tracts
-
Hud,N.V. and Feigon,J. (1997) Localization of divalent metal ions in the minor groove of DNA A-tracts. J. Am. Chem. Soc., 119, 5756-5757.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 5756-5757
-
-
Hud, N.V.1
Feigon, J.2
-
15
-
-
0033605083
-
Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending
-
Hud,N.V., Sklenar,V. and Feigon,J. (1999) Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending. J. Mol. Biol., 286, 651-660.
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 651-660
-
-
Hud, N.V.1
Sklenar, V.2
Feigon, J.3
-
16
-
-
0037031296
-
1H NMR spectroscopy and manganese(II)
-
1H NMR spectroscopy and manganese(II). Biochemistry, 41, 9900-9910.
-
(2002)
Biochemistry
, vol.41
, pp. 9900-9910
-
-
Hud, N.V.1
Feigon, J.2
-
17
-
-
0031047279
-
Intrusion of counterions into the spine of hydration in the minor groove of B-DNA: Fractional occupancy of electronegative pockets
-
Young,M.A., Jayaram,B. and Beveridge,D.L. (1997) Intrusion of counterions into the spine of hydration in the minor groove of B-DNA: fractional occupancy of electronegative pockets. J. Am. Chem. Soc., 119, 59-69.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 59-69
-
-
Young, M.A.1
Jayaram, B.2
Beveridge, D.L.3
-
18
-
-
0032575760
-
Molecular dynamics simulations of an oligonucleotide duplex with adenine tracts phased by a full helix turn
-
Young,M.A. and Beveridge,D.L. (1998) Molecular dynamics simulations of an oligonucleotide duplex with adenine tracts phased by a full helix turn. J. Mol. Biol., 281, 675-687.
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 675-687
-
-
Young, M.A.1
Beveridge, D.L.2
-
20
-
-
0034327565
-
Flexible structure of DNA: Ion dependence of minor-groove structure and dynamics
-
Hamelberg,D., McFail-Isom,L., Williams,L.D. and Wilson, W.D. (2000) Flexible structure of DNA: ion dependence of minor-groove structure and dynamics. J. Am. Chem. Soc., 122, 10513-10520.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 10513-10520
-
-
Hamelberg, D.1
McFail-Isom, L.2
Williams, L.D.3
Wilson, W.D.4
-
21
-
-
0028597967
-
DNA bending by asymmetric phosphate neutralization
-
Strauss,J.K. and Maher,L.J. (1994) DNA bending by asymmetric phosphate neutralization. Science, 266, 1829-1834.
-
(1994)
Science
, vol.266
, pp. 1829-1834
-
-
Strauss, J.K.1
Maher, L.J.2
-
22
-
-
0029792999
-
DNA bending by hexamethylene-tethered ammonium ions
-
Strauss,J.K., Roberts,C., Nelson,M.G., Switzer,C. and Maher,L.J. (1996) DNA bending by hexamethylene-tethered ammonium ions. Proc. Natl Acad. Sci. USA, 93, 9515-9520.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 9515-9520
-
-
Strauss, J.K.1
Roberts, C.2
Nelson, M.G.3
Switzer, C.4
Maher, L.J.5
-
23
-
-
0030878308
-
Effects of neutralization pattern and stereochemistry on DNA bending by methylphosphonate substitutions
-
Strauss-Soukoup,J.K., Vaghefi,M.M., Hogrefe,R.I. and Maher,L.J. (1997) Effects of neutralization pattern and stereochemistry on DNA bending by methylphosphonate substitutions. Biochemistry, 36, 8692-8698.
-
(1997)
Biochemistry
, vol.36
, pp. 8692-8698
-
-
Strauss-Soukoup, J.K.1
Vaghefi, M.M.2
Hogrefe, R.I.3
Maher, L.J.4
-
24
-
-
0034815836
-
DNA bending by asymmetrically tethered cations: Influence of tether flexibility
-
Hardwidge,P.R., Lee,D.-K., Prakash,T.P., Iglesias,B., Den,R.B., Switzer,C. and Maher,L.J. (2001) DNA bending by asymmetrically tethered cations: influence of tether flexibility. Chem. Biol., 8, 967-980.
-
(2001)
Chem. Biol.
, vol.8
, pp. 967-980
-
-
Hardwidge, P.R.1
Lee, D.-K.2
Prakash, T.P.3
Iglesias, B.4
Den, R.B.5
Switzer, C.6
Maher, L.J.7
-
25
-
-
0026723478
-
DNA curvature does not require bifurcated hydrogen bonds or pyrimidine methyl groups
-
Diekmann,S., Mazzarelli,J.M., McLaughlin,L.W., von Kitzing,E. and Travers,A.A. (1992) DNA curvature does not require bifurcated hydrogen bonds or pyrimidine methyl groups. J. Mol. Biol., 225, 729-738.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 729-738
-
-
Diekmann, S.1
Mazzarelli, J.M.2
McLaughlin, L.W.3
von Kitzing, E.4
Travers, A.A.5
-
27
-
-
0033231411
-
Improved quantitation of DNA curvature using ligation ladders
-
Ross,E.D., Den,R.B., Hardwidge,P.R. and Maher,L.J. (1999) Improved quantitation of DNA curvature using ligation ladders. Nucleic Acids Res., 27, 4135-4142.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4135-4142
-
-
Ross, E.D.1
Den, R.B.2
Hardwidge, P.R.3
Maher, L.J.4
-
28
-
-
0034641284
-
Minor groove hydration is critical to the stability of DNA duplexes
-
Lan,T. and McLaughlin,L.W. (2000) Minor groove hydration is critical to the stability of DNA duplexes. J. Am. Chem. Soc., 122, 6512-6513.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 6512-6513
-
-
Lan, T.1
McLaughlin, L.W.2
-
29
-
-
0035969967
-
Minor groove functional groups are critical for the B-form conformation of duplex DNA
-
Lan,T. and McLaughlin,L.W. (2001) Minor groove functional groups are critical for the B-form conformation of duplex DNA. Biochemistry, 40, 968-976.
-
(2001)
Biochemistry
, vol.40
, pp. 968-976
-
-
Lan, T.1
McLaughlin, L.W.2
-
30
-
-
0026787523
-
Global features of DNA structure by comparative gel electrophoresis
-
Crothers,D.M. and Drak,J. (1992) Global features of DNA structure by comparative gel electrophoresis. Methods Enzymol., 212, 46-71.
-
(1992)
Methods Enzymol.
, vol.212
, pp. 46-71
-
-
Crothers, D.M.1
Drak, J.2
-
31
-
-
0031790169
-
Solution structure of a DNA duplex containing a replicable difluorotoluene-adenine pair
-
Guckian,K.M., Krugh,T.R. and Kool,E.T. (1998) Solution structure of a DNA duplex containing a replicable difluorotoluene-adenine pair. Nature Struct. Biol., 5, 954-959.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 954-959
-
-
Guckian, K.M.1
Krugh, T.R.2
Kool, E.T.3
-
32
-
-
0020692923
-
Ordered water structure around a B-DNA dodecamer, a quantitative study
-
Kopka,M.L., Fratini,A.V., Drew,H.R. and Dickerson,R.E. (1983) Ordered water structure around a B-DNA dodecamer, a quantitative study. J. Mol. Biol., 163, 129-146.
-
(1983)
J. Mol. Biol.
, vol.163
, pp. 129-146
-
-
Kopka, M.L.1
Fratini, A.V.2
Drew, H.R.3
Dickerson, R.E.4
-
33
-
-
0023494886
-
A bifurcated hydrogen-bonded conformation in the d(A-T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin
-
Coll,M., Frederick,C.A., Wang,A.H.-J. and Rich,A. (1987) A bifurcated hydrogen-bonded conformation in the d(A-T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin. Proc. Natl Acad. Sci. USA, 84, 8385-8389.
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 8385-8389
-
-
Coll, M.1
Frederick, C.A.2
Wang, A.H.-J.3
Rich, A.4
-
34
-
-
0023657732
-
Chemical determinants of DNA bending at adenine-thymine tracts
-
Koo,H.-S. and Crothers,D.M. (1987) Chemical determinants of DNA bending at adenine-thymine tracts. Biochemistry, 26, 3745-3748.
-
(1987)
Biochemistry
, vol.26
, pp. 3745-3748
-
-
Koo, H.-S.1
Crothers, D.M.2
-
35
-
-
0022098776
-
Regularities in formation of the spine of hydration in the DNA minor groove and its influence on the DNA structure
-
Chuprina,V.P. (1985) Regularities in formation of the spine of hydration in the DNA minor groove and its influence on the DNA structure. FEBS Lett., 186, 98-102.
-
(1985)
FEBS Lett.
, vol.186
, pp. 98-102
-
-
Chuprina, V.P.1
-
36
-
-
0023668176
-
Cationic metals promote sequence DNA bending
-
Laundon,C.H. and Griffith,J.D. (1987) Cationic metals promote sequence DNA bending. Biochemistry, 26, 3759-3762.
-
(1987)
Biochemistry
, vol.26
, pp. 3759-3762
-
-
Laundon, C.H.1
Griffith, J.D.2
-
37
-
-
0033150892
-
DNA structure: Cations in charge?
-
McFail-Isom,L., Sines,C.C. and Williams,L.D. (1999) DNA structure: cations in charge? Curr. Opin. Struct. Biol., 9, 298-304.
-
(1999)
Curr. Opin. Struct. Biol.
, vol.9
, pp. 298-304
-
-
McFail-Isom, L.1
Sines, C.C.2
Williams, L.D.3
-
38
-
-
0029830638
-
Experimental measurement of aromatic stacking affinities in the context of duplex DNA
-
Guckian,K.M., Schweitzer,B.A., Ren,R.X.-F., Sheils,C.J., Paris,P.L., Tahmassebi,D.C. and Kool,E.T. (1996) Experimental measurement of aromatic stacking affinities in the context of duplex DNA. J. Am. Chem. Soc., 118, 8182-8183.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 8182-8183
-
-
Guckian, K.M.1
Schweitzer, B.A.2
Ren, R.X.-F.3
Sheils, C.J.4
Paris, P.L.5
Tahmassebi, D.C.6
Kool, E.T.7
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