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Volumn 56, Issue 2, 2003, Pages 187-197

Interspecies comparison of a gene pair with partially redundant function: The rst and kirre genes in D. virilis and D. melanogaster

Author keywords

D. melanogaster; D. virilis; Evolution; Gene duplication; Interspecies comparison; Kirre; Redundancy; Rst

Indexed keywords

ARTICLE; DROSOPHILA MELANOGASTER; DROSOPHILA VIRILIS; EXON; GENE; GENE DUPLICATION; GENE FUNCTION; GENE MUTATION; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC LINKAGE; GENETIC ORGANIZATION; GENOME; INTRON; KIRRE GENE; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; RST GENE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES COMPARISON;

EID: 0037309995     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-002-2393-2     Document Type: Article
Times cited : (10)

References (57)
  • 1
    • 0028188867 scopus 로고
    • Analysis of nucleotide substitutions and amino acid conservation in the Drosophila Adh genomic region
    • Albalat R, Marfany G, Gonzales-Duarte R (1994) Analysis of nucleotide substitutions and amino acid conservation in the Drosophila Adh genomic region. Genetica 94:27-36
    • (1994) Genetica , vol.94 , pp. 27-36
    • Albalat, R.1    Marfany, G.2    Gonzales-Duarte, R.3
  • 3
    • 0035173597 scopus 로고    scopus 로고
    • The immunoglobulin-like protein Hibris functions as a dose-dependent regulator of myoblast fusion and is differentially controlled by Ras and Notch signaling
    • Artero RD, Castanon I, Baylies MK (2001) The immunoglobulin-like protein Hibris functions as a dose-dependent regulator of myoblast fusion and is differentially controlled by Ras and Notch signaling. Development 128:4251-4264
    • (2001) Development , vol.128 , pp. 4251-4264
    • Artero, R.D.1    Castanon, I.2    Baylies, M.K.3
  • 4
    • 0035095470 scopus 로고    scopus 로고
    • The cell adhesion molecule Echinoid defines a new pathway that antagonizes the Drosophila EGF receptor signaling pathway
    • Bai JM, Chiu WH, Wang JC, Tzeng TH, Perrimon N, Hsu JC (2001) The cell adhesion molecule Echinoid defines a new pathway that antagonizes the Drosophila EGF receptor signaling pathway. Development 128:591-601
    • (2001) Development , vol.128 , pp. 591-601
    • Bai, J.M.1    Chiu, W.H.2    Wang, J.C.3    Tzeng, T.H.4    Perrimon, N.5    Hsu, J.C.6
  • 5
    • 0021723167 scopus 로고
    • Molecular evolution in Drosophila and the higher Diptera II. A time scale for fly evolution
    • Beverly SM, Wilson AC (1984) Molecular evolution in Drosophila and the higher Diptera II. A time scale for fly evolution. J Mol Evol 21:1-13
    • (1984) J Mol Evol , vol.21 , pp. 1-13
    • Beverly, S.M.1    Wilson, A.C.2
  • 7
    • 0033579464 scopus 로고    scopus 로고
    • Sequence- and structure-based prediction of eukaryotic protein phosphorylation sites
    • Blom N, Gammeltoft S, Brunak S (1999) Sequence- and structure-based prediction of eukaryotic protein phosphorylation sites. J Mol Biol 294:1351-1362
    • (1999) J Mol Biol , vol.294 , pp. 1351-1362
    • Blom, N.1    Gammeltoft, S.2    Brunak, S.3
  • 8
    • 0034659374 scopus 로고    scopus 로고
    • Drosophila SNS, a member of the immunoglobulin superfamily that is essential for myoblast fusion
    • Bour BA, Chakravarti M, West JM, Abmayr SM (2000) Drosophila SNS, a member of the immunoglobulin superfamily that is essential for myoblast fusion. Genes Dev 14:1498-1511
    • (2000) Genes Dev , vol.14 , pp. 1498-1511
    • Bour, B.A.1    Chakravarti, M.2    West, J.M.3    Abmayr, S.M.4
  • 9
    • 0030273292 scopus 로고    scopus 로고
    • Structure/function relationships of axon-associated adhesion receptors of the immunoglobulin superfamily
    • Brümmendorf T, Rathjen FG (1996) Structure/function relationships of axon-associated adhesion receptors of the immunoglobulin superfamily. Curr Opin Neurobiol 6:584-593
    • (1996) Curr Opin Neurobiol , vol.6 , pp. 584-593
    • Brümmendorf, T.1    Rathjen, F.G.2
  • 10
    • 0023664018 scopus 로고
    • Comparison of the consensus sequence flanking translational start sites in Drosophila and vertebrates
    • Cavener DR (1987) Comparison of the consensus sequence flanking translational start sites in Drosophila and vertebrates. Nucleic Acids Res 15:1353-1361
    • (1987) Nucleic Acids Res , vol.15 , pp. 1353-1361
    • Cavener, D.R.1
  • 11
    • 0029563023 scopus 로고
    • A method for estimating the numbers of synonymous and nonsynonymous substitutions per site
    • Comeron JM (1995) A method for estimating the numbers of synonymous and nonsynonymous substitutions per site. J Mol Evol 41:1152-1159
    • (1995) J Mol Evol , vol.41 , pp. 1152-1159
    • Comeron, J.M.1
  • 12
    • 0032825011 scopus 로고    scopus 로고
    • K-Estimator: Calculation of the number of nucleotide substitutions per site and the confidence intervals
    • Comeron JM (1999) K-Estimator: calculation of the number of nucleotide substitutions per site and the confidence intervals. Bioinformatics 15:763-764
    • (1999) Bioinformatics , vol.15 , pp. 763-764
    • Comeron, J.M.1
  • 13
    • 0030986495 scopus 로고    scopus 로고
    • Evolutionary origins and maintenance of redundant gene expression during metazoan development
    • Cook J, Nowak MA, Boerlijst M, Maynard-Smith J (1997) Evolutionary origins and maintenance of redundant gene expression during metazoan development. Trends Genet 13:360-364
    • (1997) Trends Genet , vol.13 , pp. 360-364
    • Cook, J.1    Nowak, M.A.2    Boerlijst, M.3    Maynard-Smith, J.4
  • 14
    • 0024502325 scopus 로고
    • Slips, strings and species
    • Dover G (1989) Slips, strings and species. Trends Genet 5:100-102
    • (1989) Trends Genet , vol.5 , pp. 100-102
    • Dover, G.1
  • 15
    • 0035161741 scopus 로고    scopus 로고
    • Characterization of Drosophila hibris, a gene related to human nephrin
    • Dworak HA, Charles MA, Pellerano LB, Sink H (2001) Characterization of Drosophila hibris, a gene related to human nephrin. Development 128:4265-4276
    • (2001) Development , vol.128 , pp. 4265-4276
    • Dworak, H.A.1    Charles, M.A.2    Pellerano, L.B.3    Sink, H.4
  • 16
    • 0027771868 scopus 로고
    • On the ancient nature of introns
    • Gilbert W, Glynias M (1993) On the ancient nature of introns. Gene 135:137-144
    • (1993) Gene , vol.135 , pp. 137-144
    • Gilbert, W.1    Glynias, M.2
  • 17
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution fpr protein-coding DNA sequences
    • Goldman N, Yang Z (1994) A codon-based model of nucleotide substitution fpr protein-coding DNA sequences. Mol Biol Evol 11:725-736
    • (1994) Mol Biol Evol , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 18
    • 0028064954 scopus 로고
    • Redundant functions of the genes knirps and knirps-related for the establishment of anterior Drosophila head structures
    • Gonzales-Gaitan M, Rothe M, Wimmer EA, Taubert H, Jäckle H (1994) Redundant functions of the genes knirps and knirps-related for the establishment of anterior Drosophila head structures. Proc Natl Acad Sci 91:8567-8571
    • (1994) Proc Natl Acad Sci , vol.91 , pp. 8567-8571
    • Gonzales-Gaitan, M.1    Rothe, M.2    Wimmer, E.A.3    Taubert, H.4    Jäckle, H.5
  • 19
    • 0029953894 scopus 로고    scopus 로고
    • The Drosophila engrailed and invected genes: Partners in regulation, expression and function
    • Gustavson E, Goldsborough AS, Ali Z, Kornberg TB (1996) The Drosophila engrailed and invected genes: partners in regulation, expression and function. Genetics 142:893-906
    • (1996) Genetics , vol.142 , pp. 893-906
    • Gustavson, E.1    Goldsborough, A.S.2    Ali, Z.3    Kornberg, T.B.4
  • 20
    • 0027312495 scopus 로고
    • The interaction of bride of sevenless with sevenless is conserved between Drosophila virilis and Drosophila melanogaster
    • Hart AC, Harrison SD, Van Vactor DLJr, Rubin GM, Zipursky SL (1993) The interaction of bride of sevenless with sevenless is conserved between Drosophila virilis and Drosophila melanogaster. Proc Natl Acad Sci 90:5047-5051
    • (1993) Proc Natl Acad Sci , vol.90 , pp. 5047-5051
    • Hart, A.C.1    Harrison, S.D.2    Van Vactor D.L., Jr.3    Rubin, G.M.4    Zipursky, S.L.5
  • 21
    • 0033208973 scopus 로고    scopus 로고
    • Gene duplication: Past, present and future
    • Holland PWH (1999) Gene duplication: past, present and future. Semin Cell Dev Biol 10:541-547
    • (1999) Semin Cell Dev Biol , vol.10 , pp. 541-547
    • Holland, P.W.H.1
  • 22
    • 0034710157 scopus 로고    scopus 로고
    • The evolution of cell adhesion
    • Hynes RO, Zhao Q (2000) The evolution of cell adhesion. J Cell Biol 150:F89-F95
    • (2000) J Cell Biol , vol.150
    • Hynes, R.O.1    Zhao, Q.2
  • 23
    • 0018757601 scopus 로고
    • Fixation of a deleterious allele at one of two "duplicate" loci by mutation pressure and random drift
    • Kimura M, King JL (1979) Fixation of a deleterious allele at one of two "duplicate" loci by mutation pressure and random drift. P Natl Acad Sci USA 76:2858-2861
    • (1979) P Natl Acad Sci USA , vol.76 , pp. 2858-2861
    • Kimura, M.1    King, J.L.2
  • 24
    • 0033209331 scopus 로고    scopus 로고
    • Evolutionary preservation of redundant duplicated genes
    • Krakauer DC, Nowak MA (1999) Evolutionary preservation of redundant duplicated genes. Semin Cell Dev Biol 10:555-559
    • (1999) Semin Cell Dev Biol , vol.10 , pp. 555-559
    • Krakauer, D.C.1    Nowak, M.A.2
  • 26
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • Krogh A, Larsson B, yon Heijne G, Sonnhammer ELL (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305:567-580
    • (2001) J Mol Biol , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Yon Heijne, G.3    Sonnhammer, E.L.L.4
  • 28
    • 0035980032 scopus 로고    scopus 로고
    • Gene duplication and evolution
    • Long M, Thornton K (2001) Gene duplication and evolution. Science 293:1551a
    • (2001) Science , vol.293
    • Long, M.1    Thornton, K.2
  • 29
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequence of duplicate genes
    • Lynch M, Conery JS (2000) The evolutionary fate and consequence of duplicate genes. Science 290:1151-1155
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 30
    • 0035980032 scopus 로고    scopus 로고
    • Gene duplication and evolution
    • Lynch M, Conery JS (2001) Gene duplication and evolution. Science 293:1551a
    • (2001) Science , vol.293
    • Lynch, M.1    Conery, J.S.2
  • 31
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3:418-426
    • (1986) Mol Biol Evol , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 32
    • 0025777355 scopus 로고
    • Interspecific comparison of the unusually repetitive Drosophila locus mastermind
    • Newfeld SJ, Smoller DA, Yedvobnick B (1991) Interspecific comparison of the unusually repetitive Drosophila locus mastermind. J Mol Evol 32:415-420
    • (1991) J Mol Evol , vol.32 , pp. 415-420
    • Newfeld, S.J.1    Smoller, D.A.2    Yedvobnick, B.3
  • 33
    • 0030614959 scopus 로고    scopus 로고
    • Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
    • Nielsen H, Engelbrecht J, Brunak S, von Heijne G (1997) Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng 10:1-6
    • (1997) Protein Eng , vol.10 , pp. 1-6
    • Nielsen, H.1    Engelbrecht, J.2    Brunak, S.3    Von Heijne, G.4
  • 34
    • 0032506534 scopus 로고    scopus 로고
    • Selective sweep of a newly evolved germ-specific gene in Drosophila
    • Nurminsky DI, Nurminskaya MV, De Aguiar D, Hartl DL (1998) Selective sweep of a newly evolved germ-specific gene in Drosophila. Nature 396:572-575
    • (1998) Nature , vol.396 , pp. 572-575
    • Nurminsky, D.I.1    Nurminskaya, M.V.2    De Aguiar, D.3    Hartl, D.L.4
  • 36
    • 0026664193 scopus 로고
    • Interspecific comparison of the transformer gene of Drosophila reveals an unusually high degree of evolutionary divergence
    • O'Neil MT, Belote JM (1992) Interspecific comparison of the transformer gene of Drosophila reveals an unusually high degree of evolutionary divergence. Genetics 131:113-128
    • (1992) Genetics , vol.131 , pp. 113-128
    • O'Neil, M.T.1    Belote, J.M.2
  • 37
    • 0035035567 scopus 로고    scopus 로고
    • Molecular evolution of the ocnus and janus genes in the Drosophila melanogaster species subgroup
    • Parsch J, Meiklejohn CD, Hauschteck-Jungen E, Hunziker P, Hartl DL (2001) Molecular evolution of the ocnus and janus genes in the Drosophila melanogaster species subgroup. Mol Biol Evol 18:801-811
    • (2001) Mol Biol Evol , vol.18 , pp. 801-811
    • Parsch, J.1    Meiklejohn, C.D.2    Hauschteck-Jungen, E.3    Hunziker, P.4    Hartl, D.L.5
  • 38
    • 0025272240 scopus 로고
    • Rapid and sensitive sequence comparison with FASTP and FASTA
    • Pearson WR (1990) Rapid and sensitive sequence comparison with FASTP and FASTA. Methods Enzymol 183:63-98
    • (1990) Methods Enzymol , vol.183 , pp. 63-98
    • Pearson, W.R.1
  • 39
    • 0029856377 scopus 로고    scopus 로고
    • High intrinsic rate of DNA loss in D. melanogaster
    • Petrov DA, Lozovskaya EE, Hartl DL (1996) High intrinsic rate of DNA loss in D. melanogaster. Nature 384:346-349
    • (1996) Nature , vol.384 , pp. 346-349
    • Petrov, D.A.1    Lozovskaya, E.E.2    Hartl, D.L.3
  • 40
    • 0027767583 scopus 로고
    • The irregular chiasm C-roughest locus of Drosophila, which affects axonal projections and programmed cell death, encodes a novel immunoglobulin-like protein
    • Ramos RGP, Igloi GL, Lichte B, Baumann U, Maier D, Schneider T, Brandstätter JH, Fröhlich A, Fischbach KF (1993) The irregular chiasm C-roughest locus of Drosophila, which affects axonal projections and programmed cell death, encodes a novel immunoglobulin-like protein. Genes Dev 7:2533-2547
    • (1993) Genes Dev , vol.7 , pp. 2533-2547
    • Ramos, R.G.P.1    Igloi, G.L.2    Lichte, B.3    Baumann, U.4    Maier, D.5    Schneider, T.6    Brandstätter, J.H.7    Fröhlich, A.8    Fischbach, K.F.9
  • 41
    • 0032696842 scopus 로고    scopus 로고
    • Irregular chiasm-C-roughest, a member of the immunoglobulin superfamily affects sense organ spacing on the Drosophila antenna by influencing the positioning of founder cells on the disc ectoderm
    • Reddy GV, Reiter G, Shanbhag S, Fischbach KF, Rodriguez V (1999) Irregular chiasm-C-roughest, a member of the immunoglobulin superfamily affects sense organ spacing on the Drosophila antenna by influencing the positioning of founder cells on the disc ectoderm. Dev Genes Evol 209:581-591
    • (1999) Dev Genes Evol , vol.209 , pp. 581-591
    • Reddy, G.V.1    Reiter, G.2    Shanbhag, S.3    Fischbach, K.F.4    Rodriguez, V.5
  • 42
    • 0029955197 scopus 로고    scopus 로고
    • Reorganization of membrane contacts prior to apoptosis in the Drosophila retina: The role of the IrreC-rst protein
    • Reiter C, Schimansky T, Nie Z, Fischbach KF (1996) Reorganization of membrane contacts prior to apoptosis in the Drosophila retina: the role of the IrreC-rst protein. Development 122:1931-1940
    • (1996) Development , vol.122 , pp. 1931-1940
    • Reiter, C.1    Schimansky, T.2    Nie, Z.3    Fischbach, K.F.4
  • 43
    • 0034697954 scopus 로고    scopus 로고
    • Drosophila dumbfounded: A myoblast attractant essential for fusion
    • Ruiz-Gomez M, Coutts N, Price A, Taylor MV, Bate M (2000) Drosophila dumbfounded: a myoblast attractant essential for fusion. Cell 102:189-198
    • (2000) Cell , vol.102 , pp. 189-198
    • Ruiz-Gomez, M.1    Coutts, N.2    Price, A.3    Taylor, M.V.4    Bate, M.5
  • 44
    • 0028910659 scopus 로고
    • Molecular phylogeny and divergence times of drosophilid species
    • Russo CAM, Takezaki N, Nei M (1995) Molecular phylogeny and divergence times of drosophilid species. Mol Biol Evol 12:391-404
    • (1995) Mol Biol Evol , vol.12 , pp. 391-404
    • Russo, C.A.M.1    Takezaki, N.2    Nei, M.3
  • 46
    • 0029166015 scopus 로고
    • Restricted expression of the IrreC-rst protein is required for normal axonal projections of columnar visual neurons
    • Schneider T, Reiter C, Eule E, Bader B, Lichte B, Nie Z, et al. (1995) Restricted expression of the IrreC-rst protein is required for normal axonal projections of columnar visual neurons. Neuron 15:259-271
    • (1995) Neuron , vol.15 , pp. 259-271
    • Schneider, T.1    Reiter, C.2    Eule, E.3    Bader, B.4    Lichte, B.5    Nie, Z.6
  • 48
    • 0033555836 scopus 로고    scopus 로고
    • Identification of three conserved regions in the DREF transcription factors from Drosophila melanogaster and Drosophila virilis
    • Takahashi Y, Hirose F, Matsukage A, Yamaguchi M (1999) Identification of three conserved regions in the DREF transcription factors from Drosophila melanogaster and Drosophila virilis. Nucleic Acids Res 27:510-516
    • (1999) Nucleic Acids Res , vol.27 , pp. 510-516
    • Takahashi, Y.1    Hirose, F.2    Matsukage, A.3    Yamaguchi, M.4
  • 49
    • 0018645703 scopus 로고
    • Polymorphism and loss of duplicate gene expression: A theoretical study with application of tetraploid fish
    • Takahata N, Maruyama T (1979) Polymorphism and loss of duplicate gene expression: a theoretical study with application of tetraploid fish. Proc Natl Acad Sci USA 76:4521-4525
    • (1979) Proc Natl Acad Sci USA , vol.76 , pp. 4521-4525
    • Takahata, N.1    Maruyama, T.2
  • 50
    • 0035846646 scopus 로고    scopus 로고
    • Revisiting recent challenges to the ancient fish-specific genome duplication hypothesis
    • Taylor JS, Van de Peer Y, Meyer A (2001) Revisiting recent challenges to the ancient fish-specific genome duplication hypothesis. Curr Biol 11:R1005-1008
    • (2001) Curr Biol , vol.11
    • Taylor, J.S.1    Van de Peer, Y.2    Meyer, A.3
  • 51
    • 0027382270 scopus 로고
    • Thinking about genetic redundancy
    • Thomas JH (1993) Thinking about genetic redundancy. Trends Genet 9:395-399
    • (1993) Trends Genet , vol.9 , pp. 395-399
    • Thomas, J.H.1
  • 52
    • 0026681573 scopus 로고
    • Structure of Drosophila virilis glycerol-3-phosphate dehydrogenase gene and a comparison with the Drosophila melanogaster gene
    • Tominaga H, Shiba T, Narise S (1992) Structure of Drosophila virilis glycerol-3-phosphate dehydrogenase gene and a comparison with the Drosophila melanogaster gene. Biochim Biophys Acta 1131:233-238
    • (1992) Biochim Biophys Acta , vol.1131 , pp. 233-238
    • Tominaga, H.1    Shiba, T.2    Narise, S.3
  • 53
    • 0024342867 scopus 로고
    • Comparison of the gap segmentation gene hunchback between Drosophila melanogaster and Drosophila virilis reveals novel modes of evolutionary change
    • Treier M, Pfeifle C, Tautz D (1989) Comparison of the gap segmentation gene hunchback between Drosophila melanogaster and Drosophila virilis reveals novel modes of evolutionary change. EMBO J 8:1517-1525
    • (1989) EMBO J , vol.8 , pp. 1517-1525
    • Treier, M.1    Pfeifle, C.2    Tautz, D.3
  • 54
    • 0030809663 scopus 로고    scopus 로고
    • A framework physical map based on P1 clones: Applications in genome evolution
    • Vieira J, Vieira CP, Hartl DL, Lozovskaya ER (1997) A framework physical map based on P1 clones: applications in genome evolution. Chromosoma 106:99-107
    • (1997) Chromosoma , vol.106 , pp. 99-107
    • Vieira, J.1    Vieira, C.P.2    Hartl, D.L.3    Lozovskaya, E.R.4
  • 55
    • 0035339923 scopus 로고    scopus 로고
    • Birth and death of duplicated genes in completely sequenced eukaryotes
    • Wagner A (2001) Birth and death of duplicated genes in completely sequenced eukaryotes. Trends Genet 17:237-239
    • (2001) Trends Genet , vol.17 , pp. 237-239
    • Wagner, A.1
  • 56
    • 0031439129 scopus 로고    scopus 로고
    • Neural cell adhesion molecules of the immunoglobulin superfamily: Role in axon growth and guidance
    • Walsh FS, Doherty P (1997) Neural cell adhesion molecules of the immunoglobulin superfamily: role in axon growth and guidance. Annu Rev Cell Dev Biol 13:425-456
    • (1997) Annu Rev Cell Dev Biol , vol.13 , pp. 425-456
    • Walsh, F.S.1    Doherty, P.2


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