Regulation of imprinting: A multi-tiered process

Journal of Cellular Biochemistry

Volumn 88, Issue 2, 2003, Pages 400-407

  Rand, Eyal ^a   Cedar, Howard ^a  

^a HEBREW UNIVERSITY   (Israel)

Author keywords

Antisense RNA; DNA methylation; Replication timing

Indexed keywords

COMPLEMENTARY RNA; DNA;

ALLELE; CELL DIFFERENTIATION; CELL DIVISION; CONFERENCE PAPER; DNA METHYLATION; DNA REPLICATION; GAMETE; GAMETOGENESIS; GENE CONTROL; GENE EXPRESSION REGULATION; GENOME IMPRINTING; MAMMAL; MOLECULAR MECHANICS; NONHUMAN; PRIORITY JOURNAL;

ALLELES; ANIMALS; DNA METHYLATION; FEMALE; GAMETOGENESIS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENOMIC IMPRINTING; HUMANS; MALE; RNA, ANTISENSE;

MAMMALIA;

EID: 0037304158     PISSN: 07302312     EISSN: None     Source Type: Journal    
DOI: 10.1002/jcb.10352     Document Type: Conference Paper

References (37)

1. Bell AC, Felsenfeld G. 2000. Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene. Nature 405:482-485.
2. Bielinska B, Blaydes SM, Buiting K, Yang T, Krajewska-Walasek M, Horsthemke B, Brannan CI. 2000. De novo deletions of SNRPN exon 1 in early human and mouse embryos result in a paternal to maternal imprint switch. Nat Genet 25:74-78.
3. Birger Y, Shemer R, Perk J, Razin A. 1999. The imprinting box of the mouse Igf2r gene. Nature 397:84-88.
4. Bourc'his D, Xu GL, Lin CS, Bollman B, Bestor TH. 2001. Dnmt3L and the establishment of maternal genomic imprints. Science 294:2536-2539.
5. Brandeis M, Kafri T, Ariel M, Chaillet JR, McCarrey J, Razin A, Cedar H. 1993. The ontogeny of allele-specific methylation associated with imprinted genes in the mouse. EMBO J 12:3669-3677.
6. Buiting K, Lich C, Cottrell S, Barnicoat A, Horsthemke B. 1999. A 5-kb imprinting center deletion in a family with Angelman syndrome reduces the shortest region of deletion overlap to 880 bp. Hum Genet 105:665-666.
7. Chaillet JR, Bader DS, Leder P. 1995. Regulation of genomic imprinting by gametic and embryonic processes. Genes Dev 9:1177-1187.
8. Chamberlain SJ, Brannan CI. 2001. The Prader-Willi syndrome imprinting center activates the paternally expressed murine Ube3a antisense transcript but represses paternal Ube3a. Genomics 73:316-322.
9. Davies K, Bowden L, Smith P, Dean W, Hill D, Furuumi H, Sasaki H, Cattanach B, Reik W. 2002. Disruption of mesodermal enhancers for Igf2 in the minute mutant. Development 129:1657-1668.
10. Davis TL, Trasler JM, Moss SB, Yang GJ, Bartolomei MS. 1999. Acquisition of the H19 methylation imprint occurs differentially on the parental alleles during spermatogenesis. Genomics 58:18-28.
11. Dimitrova DS, Gilbert DM. 1999. The spatial position and replication timing of chromosomal domains are both established in early G1 phase. Mol Cell 4:983-993.
12. Eden S, Constancia M, Hashimshony T, Dean W, Goldstein B, Johnson AC, Keshet I, Reik W, Cedar H. 2001. An upstream repressor element plays a role in Igf2 imprinting. EMBO J 20:3518-3525.
13. El-Maarri O, Buiting K, Peery EG, Kroisel PM, Balaban B, Wagner K, Urman B, Heyd J, Lich C, Brannan CI, Walter J, Horsthemke B. 2001. Maternal methylation imprints on human chromosome 15 are established during or after fertilization. Nature Genet 27:341-344.
14. Ferguson-Smith AC, Surani MA. 2001. Imprinting and the epigenetic asymmetry between parental genomes. Science 293:1086-1089.
15. Hark AT, Schoenherr CJ, Katz DJ, Ingram RS, Levorse JM, Tilghman SM. 2000. CTCF mediates methylation-sensitive enhancer blocking activity at the H19/Igf2 locus. Nature 405:486-489.
16. Hata K, Okano M, Lei H, Li E. 2002. Dnmt3L cooperates with the Dnmt3 family of de novo DNA methyltransferases to establish maternal imprints in mice. Development 129:1983-1993.
17. Howell CY, Bestor TH, Ding F, Latham KE, Mertineit C, Trasler JM, Chaillet JR. 2001. Genomic imprinting disrupted by a maternal effect mutation in the Dnmt1 gene. Cell 104:829-838.
18. Judson H, Hayward BE, Sheridan E, Bonthron DT. 2002. A global disorder of imprinting in the human female germ line. Nature 416:539-542.
19. Kitsberg D, Selig S, Brandeis M, Simon I, Keshet I, Driscoll DJ, Nicholls RD, Cedar H. 1993. Allele-specific replication timing of imprinted gene regions. Nature 364:459-463.
20. Knoll JHM, Cheng S-D, Lalande M. 1994. Allele specificity of DNA replication timing in the Angelman/Prader-Willi syndrome imprinted chromosomal region. Nature Genet 6:41-46.
21. Luikenhuis S, Wutz A, Jaenisch R. 2001. Antisense transcription through the Xist locus mediates Tsix function in embryonic stem cells. Mol Cell Biol 21:8512-8520.
22. Nicholls RD, Saitoh S, Horsthemke B. 1998. Imprinting in Prader-Willi and Angelman Syndromes. TIG 14:194-199.
23. Ohta T, Buiting K, Kokkonen H, McCandless S, Heeger S, Driscoll DJ, Cassidy SB, Horsthemke B, Nicholls RD. 1999a. Molecular mechanism of Angelman syndrome in two large families involves an imprinting mutation. Am J Hum Genet 64:385-396.
24. Okano M, Bell DW, Haber DA, Li E. 1999. DNA methyl-transferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 99: 247-257.
25. Perk J, Lande L, Cedar H, Razin A, Shemer R. On the imprinting mechanism of the Prader Willi/Angelman regional control center. Embo J (in press).
26. Ratnam S, Mertineit C, Ding F, Howell CY, Clarke HJ, Bestor TH, Chaillet JR, Trasler JM. 2002. Dynamics of Dnmtl methyltransferase expression and intracellular localization during oogenesis and preimplantation development. Dev Biol 245:304-314.
27. Reik W, Walter J. 2001. Genomic imprinting: parental influence on the genome. Nature Rev Genet 2:21-32.
28. Schnare M, Holt AC, Takeda K, Akira S, Medzhitov R. 2000. Recognition of CpG DNA is mediated by signaling pathways dependent on the adaptor protein MyD88. Curr Biol 10:1139-1142.
29. Shemer R, Birger Y, Dean WL, Reik W, Riggs AD, Razin A. 1996. Dynamic methylation adjustment and counting as part of imprinting mechanisms. Proc Natl Acad Sci USA 93:6371-6376.
30. Shemer R, Hershko AY, Perk J, Mostoslavsky R, Tsuberi B-Z, Cedar H, Buiting K, Razin A. 2000. The imprinting box of the Prader-Willi/Angelman Syndrome domain. Nature Genet 26:440-443.
31. Simon I, Tenzen T, Reubinoff BE, Hillman D, McCarrey JR, Cedar H. 1999. Asynchronous replication of imprinted genes is established in the gametes and maintained during development. Nature 401:929-932.
32. Sleutels F, Zwart R, Barlow DP. 2002. The non-coding Air RNA is required for silencing autosomal imprinted genes. Nature 415:810-813.
33. Thorvaldsen JL, Duran KL, Bartolomei MS. 1998. Deletion of the H19 differentially methylated domain results in loss of imprinted expression of H19 and Igf2. Genes Dev 12:3693-3702.
34. Tremblay KD, Saam JR, Ingram RS, Tilghman SM, Bartolomei MS. 1995. A paternal-specfiic methylation imprint marks the alleles of the mouse H19 gene. Nature Genet 9:407-413.
35. Wutz A, Smrzka OW, Schweifer N, Schellander K, Wagner EF, Barlow DP. 1997. Imprinted expression of the Igf2r gene depends on an intronic CpG island. Nature 389:745-749.
36. Yoon BJ, Herman H, Sikora A, Smith LT, Plass C, Soloway PD. 2002. Regulation of DNA methylation of Rasgrf1. Nature Genet 30:92-96.
37. Zhang J, Feng X, Hashimshony T, Keshet I, Cedar H. The establishment of transcriptional competence in early and late S-phase. Nature (in press).