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Volumn 158, Issue 1, 2003, Pages 47-54

Molecular diversity in the bacterial community and the fluorescent pseudomonads group in natural and chlorobenzoate-stressed peat-forest soil

Author keywords

16S rRNA; Chlorobenzoate; Diversity index; Equitability index; Soil; TGGE

Indexed keywords

BACTERIUM; CHLOROBENZENE; MICROBIAL COMMUNITY; MICROCOSM; SOIL POLLUTION;

EID: 0037274450     PISSN: 09445013     EISSN: None     Source Type: Journal    
DOI: 10.1078/0944-5013-00175     Document Type: Article
Times cited : (8)

References (40)
  • 1
    • 0028343555 scopus 로고
    • Remarkable archaeal diversity detected in a Yellow Stone National Park hot spring environment
    • Barns, S. M., Fundyga, R. E., Jefferies, M. W., Pace, N. R. (1994): Remarkable archaeal diversity detected in a Yellow Stone National Park hot spring environment. Proc. Nat. Acad. Sci. U.S.A. 91, 1609-1613.
    • (1994) Proc. Nat. Acad. Sci. U.S.A. , vol.91 , pp. 1609-1613
    • Barns, S.M.1    Fundyga, R.E.2    Jefferies, M.W.3    Pace, N.R.4
  • 3
    • 84986409676 scopus 로고
    • Effect of introducing genetically engineered microorganisms on soil microbial community diversity
    • Bej, A. K., Perlin, M., Atlas, R. M. (1991): Effect of introducing genetically engineered microorganisms on soil microbial community diversity. FEMS Microb. Ecol. 86, 169-176.
    • (1991) FEMS Microb. Ecol. , vol.86 , pp. 169-176
    • Bej, A.K.1    Perlin, M.2    Atlas, R.M.3
  • 4
    • 0036202170 scopus 로고    scopus 로고
    • Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants
    • Boon, N., De Windt, W., Verstraete W., Top, E.M. (2002): Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants. FEMS Microbiol. Ecol. 39, 101-112.
    • (2002) FEMS Microbiol. Ecol. , vol.39 , pp. 101-112
    • Boon, N.1    De Windt, W.2    Verstraete, W.3    Top, E.M.4
  • 5
    • 0026035006 scopus 로고
    • Biodegradation of halogenated organic compounds
    • Chaudhry, R. G., Chapalamandugu, S. (1991): Biodegradation of halogenated organic compounds. Microbiol. Rev. 55, 59-79.
    • (1991) Microbiol. Rev. , vol.55 , pp. 59-79
    • Chaudhry, R.G.1    Chapalamandugu, S.2
  • 6
    • 0003774623 scopus 로고    scopus 로고
    • John Willey and Sons. New York
    • nd Edn. pp. 179-197. John Willey and Sons. New York.
    • (1999) nd Edn. , pp. 179-197
    • Conover, W.J.1
  • 7
    • 0032914126 scopus 로고    scopus 로고
    • Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning
    • Dunbar, J., Takala, S., Barns, S. M., Davis, J., Kuske, C. R. (1999): Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning. Appl. Environ. Microbiol. 65, 1662-1669.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1662-1669
    • Dunbar, J.1    Takala, S.2    Barns, S.M.3    Davis, J.4    Kuske, C.R.5
  • 8
    • 0033941482 scopus 로고    scopus 로고
    • Assessment of microbial diversity in four south-western United States soils by 16S rRNA gene terminal restriction fragment Analysis
    • Dunbar, J., Ticknor, L. O., Kuske, C. R. (2000): Assessment of microbial diversity in four south-western United States soils by 16S rRNA gene terminal restriction fragment Analysis. Appl. Environ. Microbiol. 66, 2943-2950.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 2943-2950
    • Dunbar, J.1    Ticknor, L.O.2    Kuske, C.R.3
  • 9
    • 0002807541 scopus 로고    scopus 로고
    • Direct ribosome isolation from soil
    • (Akkermans, A. D. L., de Bruijn, F. J. and van Elsas, J. D., Eds), chap. 1.2.4. Kluwer Academic Publishers. Dordrecht, The Netherlands
    • Felske, A., Backhaus, H., Akkermans, A. D. L. (1998): Direct ribosome isolation from soil. In: Molecular Microbial Ecology Manual (Akkermans, A. D. L., de Bruijn, F. J. and van Elsas, J. D., Eds), chap. 1.2.4. Kluwer Academic Publishers. Dordrecht, The Netherlands.
    • (1998) Molecular Microbial Ecology Manual
    • Felske, A.1    Backhaus, H.2    Akkermans, A.D.L.3
  • 10
    • 0030762263 scopus 로고    scopus 로고
    • Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grasslands soils
    • Felske, A., Rheims, H., Wolterink, A., Stackebrandt, E., Akkermans, A. D. L. (1997): Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grasslands soils. Microbiol. 143, 2983-2989.
    • (1997) Microbiol. , vol.143 , pp. 2983-2989
    • Felske, A.1    Rheims, H.2    Wolterink, A.3    Stackebrandt, E.4    Akkermans, A.D.L.5
  • 11
    • 0031909733 scopus 로고    scopus 로고
    • Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands)
    • Felske, A., Wolterink, A., van Lis, R., Akkermans, A. D. L. (1998a): Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands). Appl. Environ. Microbiol. 64, 871-879.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 871-879
    • Felske, A.1    Wolterink, A.2    Van Lis, R.3    Akkermans, A.D.L.4
  • 12
    • 0031732597 scopus 로고    scopus 로고
    • Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints
    • Felske, A., Akkermans, A. D. L., de Vos, W. M. (1998b): Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints. Appl. Environ. Microbiol. 64, 4581-4587.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4581-4587
    • Felske, A.1    Akkermans, A.D.L.2    De Vos, W.M.3
  • 13
    • 0031692488 scopus 로고    scopus 로고
    • Variations in bacterial populations in human faeces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes
    • Franks, A. H., Harmsen H. J. M., Raangs, G. C., Jansen, G. J., Schut, F., Welling G. W. (1998): Variations in bacterial populations in human faeces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes. Appl. Environ. Microbiol. 64, 3336-3345.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3336-3345
    • Franks, A.H.1    Harmsen, H.J.M.2    Raangs, G.C.3    Jansen, G.J.4    Schut, F.5    Welling, G.W.6
  • 14
    • 0029662912 scopus 로고    scopus 로고
    • Broad-scale approaches to the determination of soil microbial community structure: Application of the community DNA hybridization technique
    • Griffiths, B. S., Ritz, K., Glover, L. A. (1996): Broad-scale approaches to the determination of soil microbial community structure: Application of the community DNA hybridization technique. Microb. Ecol. 31, 269-280.
    • (1996) Microb. Ecol. , vol.31 , pp. 269-280
    • Griffiths, B.S.1    Ritz, K.2    Glover, L.A.3
  • 15
    • 0026760856 scopus 로고
    • Microbial breakdown of halogenated aromatic pesticides and related compounds
    • Haggblom, M. M. (1992): Microbial breakdown of halogenated aromatic pesticides and related compounds. FEMS Microbiol. Rev. 103, 29-72.
    • (1992) FEMS Microbiol. Rev. , vol.103 , pp. 29-72
    • Haggblom, M.M.1
  • 16
    • 0031982528 scopus 로고    scopus 로고
    • Microbial evolution, diversity and ecology: A decade of ribosomal RNA analysis of uncultivated microorganisms
    • Head, I. M., Saunders, J. R., Pickup, R. W. (1998): Microbial evolution, diversity and ecology: A decade of ribosomal RNA analysis of uncultivated microorganisms. Microb. Ecol. 35, 1-21.
    • (1998) Microb. Ecol. , vol.35 , pp. 1-21
    • Head, I.M.1    Saunders, J.R.2    Pickup, R.W.3
  • 17
    • 43349086724 scopus 로고
    • Two simple media for the demonstration of pyocyanin and fluorescin
    • King, E. O., Ward, M. K., Raney, D. E. (1954): Two simple media for the demonstration of pyocyanin and fluorescin. J. Lab. Clin. Med. 44, 301-307.
    • (1954) J. Lab. Clin. Med. , vol.44 , pp. 301-307
    • King, E.O.1    Ward, M.K.2    Raney, D.E.3
  • 18
    • 0000199284 scopus 로고
    • On the calculation of information-theoretical measures of diversity
    • Lloyd, M., Zar, J. H., Karr, J. (1968): On the calculation of information-theoretical measures of diversity. Am. Midland Natur. 79, 257-272.
    • (1968) Am. Midland Natur. , vol.79 , pp. 257-272
    • Lloyd, M.1    Zar, J.H.2    Karr, J.3
  • 19
    • 0026799502 scopus 로고
    • Microbial reductive dehalogenation
    • Mohon, W. W., Tiedje, J. M. (1992): Microbial reductive dehalogenation. Microbiol. Rev. 56, 482-507.
    • (1992) Microbiol. Rev. , vol.56 , pp. 482-507
    • Mohon, W.W.1    Tiedje, J.M.2
  • 20
    • 0035487280 scopus 로고    scopus 로고
    • Numerical analysis of grassland bacterial community structure under different land management regimens by using 16S ribosomal DNA sequence data and denaturing gradient gel electrophoresis banding patterns
    • McCaig, A. E., Glover L. A., Prosser, J. I. (2001): Numerical analysis of grassland bacterial community structure under different land management regimens by using 16S ribosomal DNA sequence data and denaturing gradient gel electrophoresis banding patterns. Appl. Environ. Microbiol. 67, 4554-4559.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4554-4559
    • McCaig, A.E.1    Glover, L.A.2    Prosser, J.I.3
  • 21
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., de Waal, E. C., Uitterlinden, A. G. (1993): Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59, 695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 23
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa, detected by temperature gradient gel electrophoresis
    • Nübel, U., Engelen, B., Felske, A., Snaidr, J., Wieshuber, A., Amann, R. I., Ludwig, W., Backhaus, H. (1996): Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa, detected by temperature gradient gel electrophoresis. J. Bacteriol. 178, 5636-5643.
    • (1996) J. Bacteriol. , vol.178 , pp. 5636-5643
    • Nübel, U.1    Engelen, B.2    Felske, A.3    Snaidr, J.4    Wieshuber, A.5    Amann, R.I.6    Ludwig, W.7    Backhaus, H.8
  • 24
    • 2542509415 scopus 로고    scopus 로고
    • Quantifying microbial diversity: Morphotypes, 16S rRNA genes and carotenoids of oxygenic phototrophs in microbial mats
    • Nübel, U., García-Pichel, F., Kühl, M., Muyzer, G. (1999): Quantifying microbial diversity: Morphotypes, 16S rRNA genes and carotenoids of oxygenic phototrophs in microbial mats. Appl. Environ. Microbiol. 65, 422-430.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 422-430
    • Nübel, U.1    García-Pichel, F.2    Kühl, M.3    Muyzer, G.4
  • 25
    • 0020000486 scopus 로고
    • Chlorobenzenes in sediments, water and selected fish from lakes Superior, Huron, Erie and Ontario
    • Oliver, B. G., Nicol, K. D. (1982): Chlorobenzenes in sediments, water and selected fish from lakes Superior, Huron, Erie and Ontario. Environ. Sci. Technol. 16, 532-536.
    • (1982) Environ. Sci. Technol. , vol.16 , pp. 532-536
    • Oliver, B.G.1    Nicol, K.D.2
  • 26
    • 0034105806 scopus 로고    scopus 로고
    • Succession of microbial communities during hot composting as detected by PCR-Single-Strand-Conformation Polymorphism-based genetic profiles of small-subunit rRNA genes
    • Peters, S., Koschinky, S., Schwieger, F., Tebbe, C. C. (2000): Succession of microbial communities during hot composting as detected by PCR-Single-Strand-Conformation Polymorphism-based genetic profiles of small-subunit rRNA genes. Appl. Environ. Microbiol. 66, 930-936.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 930-936
    • Peters, S.1    Koschinky, S.2    Schwieger, F.3    Tebbe, C.C.4
  • 27
    • 0034432557 scopus 로고    scopus 로고
    • 16S rDNA-based characterization of BTX-catabolizing microbial associations isolated from a South African sandy soil
    • Ralebitso, T. K., Röling, W. F., Senior, E. van Verseveld, H. W. (2000): 16S rDNA-based characterization of BTX-catabolizing microbial associations isolated from a South African sandy soil. Biodegrad. 11, 351-357.
    • (2000) Biodegrad. , vol.11 , pp. 351-357
    • Ralebitso, T.K.1    Röling, W.F.2    Senior, E.3    Van Verseveld, H.W.4
  • 28
    • 0034490140 scopus 로고    scopus 로고
    • Bacterial community changes and enrichment of uncultured Burkholderia-like bacteria induced by chlorinated benzoates in a peat-forest soil-microcosm
    • Ramírez-Saad, H. C., Sessitsch, A., de Vos, W. M, Akkermans, A. D. L. (2000): Bacterial community changes and enrichment of uncultured Burkholderia-like bacteria induced by chlorinated benzoates in a peat-forest soil-microcosm. System. Appl. Microbiol. 23, 591-598.
    • (2000) System. Appl. Microbiol. , vol.23 , pp. 591-598
    • Ramírez-Saad, H.C.1    Sessitsch, A.2    De Vos, W.M.3    Akkermans, A.D.L.4
  • 29
    • 0028165830 scopus 로고
    • Group specific 16S rRNA hybridization probes to describe natural communities of methanogens
    • Raskin, L., Stromley, J. M., Rittmann, B. E., Stahl, D. A. (1994): Group specific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl. Environ. Microbiol. 60, 1232-1240.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 1232-1240
    • Raskin, L.1    Stromley, J.M.2    Rittmann, B.E.3    Stahl, D.A.4
  • 30
    • 0018541506 scopus 로고
    • Distribution, residence time and fluxes of tetrachloroethylene and 1,4-dichlorobenzene in Lake Zurich
    • Schwarzenbach, R. P., Molnar-Kubica, E. Giger, W., Wakeham, S. G. (1979): Distribution, residence time and fluxes of tetrachloroethylene and 1,4-dichlorobenzene in Lake Zurich, Switzerland. Environ. Sci. Technol. 13, 1367-1373.
    • (1979) Switzerland. Environ. Sci. Technol. , vol.13 , pp. 1367-1373
    • Schwarzenbach, R.P.1    Molnar-Kubica, E.2    Giger, W.3    Wakeham, S.G.4
  • 32
    • 0035462376 scopus 로고    scopus 로고
    • Microbial population structures in soil particle size fractions of a long-term fertilizer field experiment
    • Sessitsch, A., Weilharter, A., Gerzabek, M. H., Kirchmann, H., Kandeler, E. (2001): Microbial population structures in soil particle size fractions of a long-term fertilizer field experiment. Appl. Environ. Microbiol. 67, 4215-4224.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4215-4224
    • Sessitsch, A.1    Weilharter, A.2    Gerzabek, M.H.3    Kirchmann, H.4    Kandeler, E.5
  • 33
    • 0030805071 scopus 로고    scopus 로고
    • Detection of shifts in microbial community structure and diversity in soil caused by copper contamination using amplified ribosomal DNA restriction analysis
    • Smit, E., Leeflang, P., Wernars, K. (1997): Detection of shifts in microbial community structure and diversity in soil caused by copper contamination using amplified ribosomal DNA restriction analysis. FEMS Microbiol. Ecol. 23, 249-261.
    • (1997) FEMS Microbiol. Ecol. , vol.23 , pp. 249-261
    • Smit, E.1    Leeflang, P.2    Wernars, K.3
  • 34
    • 0027532030 scopus 로고
    • Growth of syntrophic propionate-oxidizing bacteria with fumarate in the absence of methanogenic bacteria
    • Stams, A. J. M., van Dijk, J. B., Dijkema, C., Plugge, C. (1993): Growth of syntrophic propionate-oxidizing bacteria with fumarate in the absence of methanogenic bacteria. Appl. Environ. Microbiol 59, 1114-1119.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1114-1119
    • Stams, A.J.M.1    Van Dijk, J.B.2    Dijkema, C.3    Plugge, C.4
  • 35
    • 0003341851 scopus 로고
    • Development and application of nucleic acid probes
    • Stackebrandt, E. and Goodfellow, M., Eds. John Wiley and Sons, Chichester
    • Stahl, D. A., Amann, R. (1991): Development and application of nucleic acid probes. In: Nucleic acid techniques in bacterial systematics (Stackebrandt, E. and Goodfellow, M., Eds.), pp. 205-248. John Wiley and Sons, Chichester.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 205-248
    • Stahl, D.A.1    Amann, R.2
  • 36
    • 0001782023 scopus 로고
    • Use of DNA analysis to determine the diversity of microbial communities
    • Ritz, K., Dighton, J. and Giller, K. E., Eds. British Soc. Soil Sci. Chichester
    • Torsvik, V., Goksøyr, J., Daae, F. L., Sørheim, R., Michalsen, J., Salte, K. (1994): Use of DNA analysis to determine the diversity of microbial communities. In: Beyond the biomass (Ritz, K., Dighton, J. and Giller, K. E., Eds), pp. 39-48. British Soc. Soil Sci. Chichester.
    • (1994) Beyond the Biomass , pp. 39-48
    • Torsvik, V.1    Goksøyr, J.2    Daae, F.L.3    Sørheim, R.4    Michalsen, J.5    Salte, K.6
  • 37
    • 0345195995 scopus 로고    scopus 로고
    • Determinations of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • Wintzingerode, F., Göbel, U. B., Stackebrandt E. (1997): Determinations of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21, 213-229.
    • (1997) FEMS Microbiol. Rev. , vol.21 , pp. 213-229
    • Wintzingerode, F.1    Göbel, U.B.2    Stackebrandt, E.3
  • 38
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Wen-Tso Liu, Marsh, T. L., Cheng, H., Forney, L. (1997): Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63, 4516-4522.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4516-4522
    • Liu, W.-T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.4
  • 39
    • 0031456928 scopus 로고    scopus 로고
    • Ineffective Frankia strains in wet stands of Alnus glutinosa L. Gaertn. in the Netherlands
    • Wolters, D. J., Akkermans, A. D. L, van Dijk, C. (1997): Ineffective Frankia strains in wet stands of Alnus glutinosa L. Gaertn. in the Netherlands. Soil Biol. Biochem. 29, 1707-1712.
    • (1997) Soil Biol. Biochem. , vol.29 , pp. 1707-1712
    • Wolters, D.J.1    Akkermans, A.D.L.2    Van Dijk, C.3
  • 40
    • 0027878510 scopus 로고
    • Historical input and behaviour of hexachlorobenzene, polychlorinated biphenyls and polycyclic aromatic hydrocarbons in 2 dated sediment cores from the Scheldt estuary, SW Netherlands
    • van Zoest, R., van Eck, G. T. M. (1993): Historical input and behaviour of hexachlorobenzene, polychlorinated biphenyls and polycyclic aromatic hydrocarbons in 2 dated sediment cores from the Scheldt estuary, SW Netherlands. Mar. Chem. 44, 95-103.
    • (1993) Mar. Chem. , vol.44 , pp. 95-103
    • Van Zoest, R.1    Van Eck, G.T.M.2


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