-
1
-
-
0035910145
-
Comparative phylogeny of the ammonia monooxygenase subunit A and 16S rRNA genes of ammonia-oxidizing bacteria
-
Aakra, A., Utaker, J. B. & Nes, I. F. (2001). Comparative phylogeny of the ammonia monooxygenase subunit A and 16S rRNA genes of ammonia-oxidizing bacteria. FEMS Microbiol Lett 205, 237-242.
-
(2001)
FEMS Microbiol. Lett.
, vol.205
, pp. 237-242
-
-
Aakra, A.1
Utaker, J.B.2
Nes, I.F.3
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0031687820
-
Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples
-
Braker, G., Fesefeldt A. & Witzel, K.-P. (1998). Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples. Appl Environ Microbiol 64, 3769-3775.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3769-3775
-
-
Braker, G.1
Fesefeldt, A.2
Witzel, K.-P.3
-
4
-
-
0034016758
-
Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific Northwest marine sediment communities
-
Braker, G., Zhou, J., Wu, L., Devol, A. H. & Tledje, J. M. (2000). Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific Northwest marine sediment communities. Appl Environ Microbiol 66, 2096-2104.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2096-2104
-
-
Braker, G.1
Zhou, J.2
Wu, L.3
Devol, A.H.4
Tledje, J.M.5
-
5
-
-
0035319656
-
Community structure of denitrifiers, bacteria, and archaea along redox gradients in Pacific Northwest marine sediments by terminal restriction fragment length analysis of amplified nitrite reductase (nirS) and 16S rRNA genes
-
Braker, G., Ayala-del-Rio, H. L., Devol, A. H., Fesefeldt, A. & Tiedje, J. M. (2001). Community structure of denitrifiers, bacteria, and archaea along redox gradients in Pacific Northwest marine sediments by terminal restriction fragment length analysis of amplified nitrite reductase (nirS) and 16S rRNA genes. Appl Environ Microbiol 67, 1893-1901.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 1893-1901
-
-
Braker, G.1
Ayala-del-Rio, H.L.2
Devol, A.H.3
Fesefeldt, A.4
Tiedje, J.M.5
-
6
-
-
0026808684
-
Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction
-
Bruce, K D., Hiorns, W. D., Hobman, J. L., Osborn, A. M., Strike, P. & Ritchie, D. A. (11992). Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Appl Environ Microbiol 58, 3413-3416.
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 3413-3416
-
-
Bruce, K.D.1
Hiorns, W.D.2
Hobman, J.L.3
Osborn, A.M.4
Strike, P.5
Ritchie, D.A.6
-
7
-
-
0035350952
-
Dissimilatory nitrite reductase genes from autotrophic ammonia-oxidizing bacteria
-
Casciotti, K. L. & Ward, B. B. (2001). Dissimilatory nitrite reductase genes from autotrophic ammonia-oxidizing bacteria. Appl Environ Microbiol 67, 2213-2221.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 2213-2221
-
-
Casciotti, K.L.1
Ward, B.B.2
-
8
-
-
0018069847
-
Purification and properties of nitrite reductase from Escherichia coli K12
-
Coleman, K J., Cornish-Bowden, A. & Cole, J. A. (1978). Purification and properties of nitrite reductase from Escherichia coli K12. Biochem J 175, 483-493.
-
(1978)
Biochem. J.
, vol.175
, pp. 483-493
-
-
Coleman, K.J.1
Cornish-Bowden, A.2
Cole, J.A.3
-
9
-
-
0032836317
-
Purification and characterization of the single-component nitric oxide reductase from Ralstonia eutropha H16
-
Cramm, R., Pohlmann, A. & Friedrich, B. (1999). Purification and characterization of the single-component nitric oxide reductase from Ralstonia eutropha H16. FEBS Lett 460, 6-10.
-
(1999)
FEBS Lett.
, vol.460
, pp. 6-10
-
-
Cramm, R.1
Pohlmann, A.2
Friedrich, B.3
-
10
-
-
0024444791
-
Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA
-
Edwards, U., Rogall, T., Blocker, H., Emde, M. & Bottger, E. C. (1989). Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17, 7843-7853.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 7843-7853
-
-
Edwards, U.1
Rogall, T.2
Blocker, H.3
Emde, M.4
Bottger, E.C.5
-
11
-
-
0032782801
-
Detection of genes for periplasmic nitrate reductase in nitrate respiring bacteria and in community DNA
-
Flanagan, D. A., Gregory, L. G., Carter, J. P., Karakas-Sen, A., Richardson, D. J. & Spiro, S. (1999). Detection of genes for periplasmic nitrate reductase in nitrate respiring bacteria and in community DNA. FEMS Microbiol Lett 177, 263-270.
-
(1999)
FEMS Microbiol. Lett.
, vol.177
, pp. 263-270
-
-
Flanagan, D.A.1
Gregory, L.G.2
Carter, J.P.3
Karakas-Sen, A.4
Richardson, D.J.5
Spiro, S.6
-
12
-
-
0033975035
-
Detection of genes for membrane-bound nitrate reductase in nitrate-respiring bacteria and in community DNA
-
Gregory, L. G., Karakas-Sen, A., Richardson, D. J. & Spiro, S. (2000). Detection of genes for membrane-bound nitrate reductase in nitrate-respiring bacteria and in community DNA. FEMS Microbiol Lett 183, 275-279.
-
(2000)
FEMS Microbiol. Lett.
, vol.183
, pp. 275-279
-
-
Gregory, L.G.1
Karakas-Sen, A.2
Richardson, D.J.3
Spiro, S.4
-
13
-
-
0032964425
-
PCR detection of genes encoding nitrite reductase in denitrifying bacteria
-
Hallin, S. & Lindgren, P.-E. (1999). PCR detection of genes encoding nitrite reductase in denitrifying bacteria. Appl Environ Microbiol 65, 1652-1657.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1652-1657
-
-
Hallin, S.1
Lindgren, P.-E.2
-
14
-
-
0022356548
-
Isolation and characterization of Paracoccus denitrificans mutants with defects in the metabolism of one-carbon compounds
-
Harms, N., de Vries, G. E., Maurer, K., Veltkamp, E. & Stouthamer, A. H. (1985). Isolation and characterization of Paracoccus denitrificans mutants with defects in the metabolism of one-carbon compounds. J Bacteriol 164, 1064-1070.
-
(1985)
J. Bacteriol.
, vol.164
, pp. 1064-1070
-
-
Harms, N.1
de Vries, G.E.2
Maurer, K.3
Veltkamp, E.4
Stouthamer, A.H.5
-
15
-
-
0028887456
-
Assessing horizontal transfer of nifHDK genes in eubacteria: Nucleotide sequence of nifK from Frankia strain HFPCc13
-
Hirsch, A. M., McKhann, H. I., Reddy, A., Liao, J., Fang, Y. & Marshall, C. R. (1995). Assessing horizontal transfer of nifHDK genes in eubacteria: nucleotide sequence of nifK from Frankia strain HFPCc13. Mol Biol Evol 12, 16-27.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 16-27
-
-
Hirsch, A.M.1
McKhann, H.I.2
Reddy, A.3
Liao, J.4
Fang, Y.5
Marshall, C.R.6
-
16
-
-
0000732090
-
Evolution of protein molecules
-
Edited by H. N. Munro. New York: Academic Press
-
Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
17
-
-
0024307824
-
Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
-
Kishino, H. & Hasegawa, M. (1989). Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J Mol Evol 29, 170-179.
-
(1989)
J. Mol. Evol.
, vol.29
, pp. 170-179
-
-
Kishino, H.1
Hasegawa, M.2
-
18
-
-
0020064009
-
Denitrification
-
Knowles, R. (1982). Denitrification. Microbiol Rev 46, 43-70.
-
(1982)
Microbiol. Rev.
, vol.46
, pp. 43-70
-
-
Knowles, R.1
-
19
-
-
0034110176
-
The relationship of nitrate reducing bacteria on the basis of narH gene sequences and comparison of narH and 16S rDNA based phylogeny
-
Petri, R. & Imhoff, J. F. (2000). The relationship of nitrate reducing bacteria on the basis of narH gene sequences and comparison of narH and 16S rDNA based phylogeny. Syst Appl Microbiol 23, 47-57.
-
(2000)
Syst. Appl. Microbiol.
, vol.23
, pp. 47-57
-
-
Petri, R.1
Imhoff, J.F.2
-
20
-
-
0031750103
-
Anaerobic growth, a property horizontally transferred by an Hfr-like mechanism among extreme thermophiles
-
Ramirez-Arcos, S., Fernandez-Herrero, L. A., Marin, I. & Berenguer, J. (1998). Anaerobic growth, a property horizontally transferred by an Hfr-like mechanism among extreme thermophiles. J Bacteriol 180, 3137-3143.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 3137-3143
-
-
Ramirez-Arcos, S.1
Fernandez-Herrero, L.A.2
Marin, I.3
Berenguer, J.4
-
21
-
-
0035107176
-
Functional, biochemical and genetic diversity of prokaryotic nitrate reductases
-
Richardson, D. J., Berks, B. C., Russell, D. A., Spiro, S. & Taylor, C. J. (2001). Functional, biochemical and genetic diversity of prokaryotic nitrate reductases. Cell Mol Life Sci 58, 165-178.
-
(2001)
Cell Mol. Life Sci.
, vol.58
, pp. 165-178
-
-
Richardson, D.J.1
Berks, B.C.2
Russell, D.A.3
Spiro, S.4
Taylor, C.J.5
-
22
-
-
0036330611
-
Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil
-
Rösch, C., Mergel, M. & Bothe, H. (2002). Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil. Appl Environ Microbiol 68, 3818-3829.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 3818-3829
-
-
Rösch, C.1
Mergel, M.2
Bothe, H.3
-
23
-
-
0032080514
-
Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments
-
Scala, D. J. & Kerkhof, L. J. (1998). Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments. FEMS Microbiol Lett 162, 61-68.
-
(1998)
FEMS Microbiol. Lett.
, vol.162
, pp. 61-68
-
-
Scala, D.J.1
Kerkhof, L.J.2
-
24
-
-
0032933229
-
Diversity of nitrous oxide reductase (nosZ) genes in continental shelf sediments
-
Scala, D. J. & Kerkhof, L. J. (1999). Diversity of nitrous oxide reductase (nosZ) genes in continental shelf sediments. Appl Environ Microbiol 65, 1681-1687.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1681-1687
-
-
Scala, D.J.1
Kerkhof, L.J.2
-
25
-
-
0000491364
-
Non-pathogenic members of the genus Pseudomonas
-
2nd edn, Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer-Verlag
-
Stolp, H. & Gadkari, D. (11992). Non-pathogenic members of the genus Pseudomonas. In The Prokaryotes, 2nd edn, pp. 719-741. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer-Verlag.
-
(1992)
The Prokaryotes
, pp. 719-741
-
-
Stolp, H.1
Gadkari, D.2
-
26
-
-
0003449416
-
ARB-A software environment for sequence data
-
Department of Microbiology, Technical University of Munich, Germany
-
Strunk, O. & Ludwig, W. (2002). ARB-A software environment for sequence data. Department of Microbiology, Technical University of Munich, Germany.
-
(2002)
-
-
Strunk, O.1
Ludwig, W.2
-
27
-
-
0035957058
-
A novel copper A containing menaquinol NO reductase from Bacillus azotoformans
-
Suharti, Stampraad, M. J., Schröder, I. & de Vries, S. (2001). A novel copper A containing menaquinol NO reductase from Bacillus azotoformans. Biochemistry 40, 2632-2639.
-
(2001)
Biochemistry
, vol.40
, pp. 2632-2639
-
-
Suharti, A.1
Stampraad, M.J.2
Schröder, I.3
de Vries, S.4
-
29
-
-
0026708461
-
Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction
-
Tsai, Y.-L. & Olson, B.H. (1992). Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction. Appl Environ Microbiol 58, 2292-2295.
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 2292-2295
-
-
Tsai, Y.-L.1
Olson, B.H.2
-
30
-
-
0032934319
-
Nitric oxide in bacteria: Synthesis and consumption
-
1411
-
Watmough, N. J., Butland, G., Cheesman, M. R., Moir, J. W. B., Richardson, D. J. & Spiro, S. (1999). Nitric oxide in bacteria: synthesis and consumption. Biochim Biophys Acta 1411, 456-474.
-
(1999)
Biochim. Biophys. Acta
, pp. 456-474
-
-
Watmough, N.J.1
Butland, G.2
Cheesman, M.R.3
Moir, J.W.B.4
Richardson, D.J.5
Spiro, S.6
-
31
-
-
0000266664
-
The denitrifying prokaryotes
-
2nd edn, Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer-Verlag
-
Zumft W. G. (1992). The denitrifying prokaryotes. In The Prokaryotes, 2nd edn, pp. 554-582. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York:
-
(1992)
The Prokaryotes
, pp. 554-582
-
-
Zumft, W.G.1
|