Regulation and co-ordination of nuclear gene expression during mitochondrial biogenesis

Experimental Physiology

Volumn 88, Issue 1, 2003, Pages 33-40

  Goffart, S ^a   Wiesner, R J ^a  

^a UNIVERSITY OF COLOGNE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; CYCLIC AMP RESPONSIVE ELEMENT BINDING PROTEIN; GLUCOCORTICOID; MYOCYTE ENHANCER FACTOR 2; MYOGENIN; NUCLEAR PROTEIN; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA; REGULATOR PROTEIN; STEROID HORMONE; THYROID HORMONE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR SP1;

ADAPTATION; ANIMAL CELL; BIOGENESIS; CELL DIFFERENTIATION; CELL FUNCTION; CELL MATURATION; CELL SPECIFICITY; CELL STIMULATION; CELL TYPE; CONTROLLED STUDY; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENETIC ANALYSIS; GENETIC CODE; MITOCHONDRIAL GENETICS; MITOCHONDRION; NONHUMAN; PROTEIN FAMILY; PROTEIN FUNCTION; REGULATORY MECHANISM; REVIEW;

EID: 0037250915     PISSN: 09580670     EISSN: None     Source Type: Journal    
DOI: 10.1113/eph8802500     Document Type: Review

References (61)

1. Aaizencang G, Solis C, Bishop DF, Warner C & Desnick RJ (2000). Human uroporphyrinogen-III synthase: genomic organization, alternative promoters, and erythroid-specific expression. Genomics 70, 223-231.
2. Allan EH, Chisholm AB & Titheradge MA (1983). The stimulation of hepatic oxidative phosphorylation following dexamethasone treatment of rats. Biochim Biophys Acta 725, 71-76.
3. Andersson U & Scarpulla RC (2001). Pgc-1-related co-activator, a novel, serum-inducible co-activator of nuclear respiratory factor 1-dependent transcription in mammalian cells. Mol Cell Biol 21, 3738-3749.
4. Arnould T, Vankoningsloo S, Renard P, Houbion A, Ninane N, Demazy C, Remacle J & Raes M (2002). CREB activation induced by mitochondrial dysfunction is a new signaling pathway that impairs cell proliferation. EMBO J 21, 53-63.
5. Barbe P, Larrouy D, Boulanger C, Chevillotte E, Viguerie N, Thalamas C, Trastoy MO, Roques M, Vidal H & Langin D (2001). Triiodothyronine-mediated up-regulation of UCP2 and UCP3 mRNA expression in human skeletal muscle without coordinated induction of mitochondrial respiratory chain genes. FASEB J 15, 13-15.
6. Basu A, Lenka N, Mullick J & Avadhani NG (1997). Regulation of murine cytochrome oxidase Vb gene expression in different tissues and during myogenesis. Role of a YY-1 factor-binding negative enhancer. J Biol Chem 272, 5899-5908.
7. Beckett D (2001). Regulated assembly of transcription factors and control of transcription initiation. J Mol Biol 314, 335-352.
8. Braidotti G, Borthwick IA & May BK (1993). Identification of regulatory sequences in the gene for 5-aminolevulinate synthase from rat. J Biol Chem 268, 1109-1117.
9. Choi YS, Lee HK & Pak YK (2002). Characterization of the 5′-flanking region of the rat gene for mitochondrial transcription factor A (Tfam). Biochim Biophys Acta 1574, 200-204.
10. Chung AB, Stepien G, Haraguchi Y, Li K & Wallace DC (1992). Transcriptional control of nuclear genes for the mitochondrial muscle ADP/ATP translocator and the ATP synthase beta subunit. Multiple factors interact with the OXBOX/REBOX promoter sequences. J Biol Chem 267, 21154-21161.
11. 2+/calmodulin- as well as cAMP-dependent protein kinase. Proc Natl Acad Sci USA 88, 5061-5065.
12. Duguez S, Feasson L, Denis C & Freyssenet D (2002). Mitochondrial biogenesis during skeletal muscle regeneration. Am J Physiol Endocrinol Metab 282, E802-809.
13. Enriquez JA, Fernandez-Silva P, Garrido-Perez N, Lopez-Perez MJ, Perez-Martos A & Montoya, J (1999). Direct regulation of mitochondrial RNA synthesis by thyroid hormone. Mol Cell Biol 19, 657-670.
14. Evans MJ & Scarpulla RC (1989). Interaction of nuclear factors with multiple sites in the somatic cytochrome c promoter. Characterization of upstream NRF-1, ATF, and intron Sp1 recognition sequences. J Biol Chem 264, 14361-14368.
15. Evans MJ & Scarpulla RC (1990). NRF-1: a trans-activator of nuclear-encoded respiratory genes in animal cells. Genes Dev 4, 1023-1034.
16. Featherstone M (2002). Co-activators in transcription initiation: here are your orders. Curr Opinion Genet Dev 12, 149-155.
17. Gill G (2001). Regulation of the initiation of eukaryotic transcription. Essays Biochem 37, 33-43.
18. Hernandez JM, Giner P & Hernandez-Yago J (1999). Gene structure of the human mitochondrial outer membrane receptor Tom20 and evolutionary study of its family of processed pseudogenes. Gene 239, 283-291.
19. Herzig RP, Scacco S & Scarpulla RC (2000). Sequential serum-dependent activation of CREB and NRF-1 leads to enhanced mitochondrial respiration through the induction of cytochrome c. J Biol Chem 275, 13134-13141.
20. Herzig S, Long F, Jhala US, Hedrick S, Quinn R, Bauer A, Rudolph D, Schutz G, Yoon C, Puigserver P, Spiegelman B & Montminy M (2001). CREB regulates hepatic gluconeogenesis through the co-activator PGC-1. Nature 413, 179-183.
21. Hood DA (2001). Contractile activity-induced mitochondrial biogenesis in skeletal muscle. J Appl Physiol 90, 1137-1157.
22. Hori R & Carey M (1994). The role of transcriptional activators in assembly of RNA polymerase II transcription complexes. Curr Opin Genet Dev 4, 236-244.
23. Huo L & Scarpulla RC (2001). Mitochondrial DNA instability and peri-implantation lethality associated with targeted disruption of nuclear respiratory factor 1 in mice. Mol Cell Biol 21, 644-654.
24. Klingenspor M, Ivemeyer M, Wiesinger H., Haas K, Heldmaier G & Wiesner RJ (1996). Biogenesis of thermogenic mitochondria in brown adipose tissue of Djungarian hamsters during cold adaptation. Biochem J 316, 607-613.
25. Knutti D & Kralli A (2001). PGC-1, a versatile co-activator. Trends Endocrin Metab 12, 360-365.
26. Lehman JJ, Barger PM, Kovacs A, Saffitz JE, Medeiros DM & Kelly DP (2000). Peroxisome proliferator-activated receptor gamma co-activator-1 promotes cardiac mitochondrial biogenesis. J Clin Invest 106, 847-856.
27. Lenka N, Vijayasarathy C, Mullick J & Avadhani NG (1998). Structural organization and transcription regulation of nuclear genes encoding the mammalian cytochrome c oxidase complex. Prog Nucleic Acid Res Mol Biol 61, 309-344.
28. Lescuyer P, Martinez P & Lunardi J (2002). YY1 and Sp1 activate transcription of the human NDUFS8 gene encoding the mitochondrial complex I TYKY subunit. Biochim Biophys Acta 1574, 164-174.
29. Levy SE, Chen YS, Graham BH & Wallace DC (2000). Expression and sequence analysis of the mouse adenine nucleotide translocase 1 and 2 genes. Gene 254, 57-66.
30. Li R, Luciakova K, Zaid A, Betina S, Fridell E & Nelson BD (1997). Thyroid hormone activates transcription from the promoter regions of some human nuclear-encoded genes of the oxidative phosphorylation system. Mol Cell Endocrinol 128, 69-75.
31. Lin J, Puigserver P, Donovan J, Tarr P & Spiegelman BM (2002a). Peroxisome proliferator-activated receptor gamma co-activator 1beta (PGC-1beta), a novel PGC-1-related transcription co-activator associated with host cell factor. J Biol Chem 277, 1645-1648.
32. Lin J, Wu H, Tarr PT, Zhang CY, Wu Z, Boss O, Michael LF, Puigserver P, Isotani E, Olson EN, Lowell BB, Bassel-Duby R & Spiegelman BM (2002b). Transcriptional co-activator PGC-1alpha drives the formation of slow-twitch muscle fibres. Nature 418, 797-801.
33. Manley JL, Um M, Li C & Ashali H (1996). Mechanisms of transcriptional activation and repression can both involve TFIID. Philos Trans R Soc Lond B Biol Sci 351, 517-526.
34. Moltekin JD & Olson EN (1999). Combinatorial control of muscle development by basic helix-loop-helix and MADS-box transcription factors. Proc Natl Acad Sci USA 93, 9366-9373.
35. Näär A, Lemon BD & Tjian R (2001). Transcriptional co-activator complexes. Annu Rev Biochem 70, 475-501.
36. Nelson BD, Luciakova K, Li R & Betina S (1995). The role of thyroid hormone and promoter diversity in the regulation of nuclear encoded mitochondrial proteins. Biochim Biophys Acta 1271, 85-91.
37. Ojuka EO, Jones TE, Nolte LA, Chen M, Wamhoff BR, Sturek M & Holloszy JO (2002). Regulation of GLUT4 biogenesis in muscle: evidence for involvement of AMPK and Ca(2+). Am J Physiol Endocrinol Metab 282, E1008-1013.
38. Palacios-Romero R & Mowbray J (1979). Evidence for the rapid direct control both in vivo and in vitro of the efficiency of oxidative phosphorylation by 3,5,3′-tri-iodo-L-thyronine in rats. Biochem J 184, 527-538.
39. Pillar TM & Seitz HJ (1997). Thyroid hormone and gene expression in the regulation of mitochondrial respiratory function. Eur J Endocrinol 136, 231-239.
40. Pugh BF & Tjian R (1992). Diverse transcriptional functions of the multisubunit eukaryotic TFIID complex. J Biol Chem 267, 679-682.
41. Puigserver P, Wu Z, Park CW, Graves R, Wright M & Spiegelman BM (1998). A cold-inducible co-activator of nuclear receptors linked to adaptive thermogenesis. Cell 92, 829-839.
42. Scarpulla RC (1997). Nuclear control of respiratory chain expression in mammalian cells. J Bioenerg Biomembr 29, 109-119.
43. Scarpulla RC (2002a). Transcriptional activators and co-activators in the nuclear control of mitochondrial function in mammalian cells. Gene 286, 81-89.
44. Scarpulla RC (2002b). Nuclear activators and co-activators in mammalian mitochondrial biogenesis. Biochim Biophys Acta 1576, 1-14.
45. Seelan RS & Grossman LI (1997). Structural organization and promoter analysis of the bovine cytochrome c oxidase subunit VIIc gene. A functional role for YY1. J Biol Chem 272, 10175-10181.
46. Sheng M, Thompson MA & Greenberg ME (1991). CREB: a Ca(2+)-regulated transcription factor phosphorylated by calmodulin-dependent kinases. Science 252, 1427-1430.
47. Shore P & Sharrocks AD (1995). The MADS-box family of transcription factors. Eur J Biochem 229, 1-13.
48. Smale ST (1997). Transcription initiation from TATA-less promoters within eukaryotic protein-coding genes. Biochim Biophys Acta 1351, 73-88.
49. Sterling K, Milch PO, Brenner MA & Lazarus JH (1977). Thyroid hormone action: the mitochondrial pathway. Science 197, 996-999.
50. Suzuki H, Hosokawa Y, Nishikimi M & Ozawa T (1991). Existence of common homologous elements in the transcriptional regulatory regions of human nuclear genes and mitochondrial gene for the oxidative phosphorylation system. J Biol Chem 266, 2333-2338.
51. Suzuki H, Suzuki S, Kumar S & Ozawa T (1995). Human nuclear and mitochondrial Mt element-binding proteins to regulatory regions of the nuclear respiratory genes and to the mitochondrial promoter region. Biochem Biophys Res Commun 213, 204-210.
52. Virbasius CA, Virbasius JV & Scarpulla RC (1993). NRF-1, an activator involved in nuclear-mitochondrial interactions, utilizes a new DNA-binding domain conserved in a family of developmental regulators. Dev 7, 2431-2445.
53. Virbasius JV & Scarpulla RC (1994). Activation of the human mitochondrial transcription factor A gene by nuclear respiratory factors: a potential regulatory link between nuclear and mitochondrial gene expression in organelle biogenesis. Proc Natl Acad Sci USA 91, 1309-1313.
54. Weber K, Bruck P, Mikes Z, Kupper JH, Klingenspor M & Wiesner RJ (2002). Glucocorticoid hormone stimulates mitochondrial biogenesis specifically in skeletal muscle. Endocrinology 143, 177-184.
55. Weitzel JM, Kutz S, Radtke C, Grott S & Seitz HJ (2001). Hormonal regulation of multiple promoters of the rat mitochondrial glycerol-3-phosphate dehydrogenase gene: identification of a complex hormone-response element in the ubiquitous promoter B. Eur J Biochem 268, 4095-4103.
56. Wiesner RJ, Aschenbrenner V, Ruegg JC & Zak R (1994). Coordination of nuclear and mitochondrial gene expression during the development of cardiac hypertrophy in rats. Am J Physiol 267, C229-235.
57. Wiesner RJ, Kurowski TT & Zak R (1992). Regulation by thyroid hormone of nuclear and mitochondrial genes encoding subunits of cytochrome-c oxidase in rat liver and skeletal muscle. Mol Endocrinol 6, 1458-1467.
58. Wu H, Kanatous SB, Thurmond FA, Gallardo T, Isotani E, Bassel-Duby R & Williams RS (2002). Regulation of mitochondrial biogenesis in skeletal muscle by CaMK. Science 296, 349-352.
59. Wu Z, Puigserver P, Andersson U, Zhang C, Adelmant G, Mootha V, Troy A, Cinti S, Lowell B, Scarpulla RC & Spiegelman BM (1999). Mechanisms controlling mitochondrial biogenesis and respiration through the thermogenic co-activator PGC-1. Cell 98, 115-124.
60. Yoon JC, Puigserver P, Chen G, Donovan J, Wu Z, Rhee J, Adelmant G, Stafford J, Kahn CR, Granner DK, Newgard CB & Spiegelman BM (2001). Control of hepatic gluconeogenesis through the transcriptional co-activator PGC-1. Nature 413, 131-138.
61. Zaid A, Li R, Luciakova K, Barath P, Nery S & Nelson BD (1999). On the role of the general transcription factor Sp1 in the activation and repression of diverse mammalian oxidative phosphorylation genes. J Bioenerg Biomembr 31, 129-135.