Study of MICA alleles in 201 African Americans by multiplexed single nucleotide extension (MSNE) typing

Human Immunology

Volumn 64, Issue 1, 2003, Pages 130-136

  Zhang, Yanzheng ^a   Han, Mei ^a   Vorhaben, Robert ^a   Giang, Chris ^a   Lavingia, Bhavna ^a   Stastny, Peter ^a  

^a UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

Author keywords

African Americans; Allelic diversity; Linkage disequilibrium; MICA; MSNE

Indexed keywords

DNA POLYMERASE; GENOMIC DNA; HLA B ANTIGEN;

ALLELE; ARTICLE; DNA TEMPLATE; ETHNIC GROUP; FLOW CYTOMETRY; FLUORESCENCE; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENETIC VARIABILITY; GENOTYPE; HLA TYPING; HUMAN; HUMAN CELL; IMMUNOGENETICS; MAJOR CLINICAL STUDY; MAJOR HISTOCOMPATIBILITY COMPLEX; MULTIPLEXED SINGLE NUCLEOTIDE EXTENSION TYPING; NEGRO; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; TANDEM REPEAT;

AFRICAN AMERICANS; ALLELES; CELL LINE; HISTOCOMPATIBILITY ANTIGENS CLASS I; HUMANS; LINKAGE DISEQUILIBRIUM; NUCLEIC ACID AMPLIFICATION TECHNIQUES; POLYMORPHISM, GENETIC;

EID: 0037237204     PISSN: 01988859     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0198-8859(02)00743-7     Document Type: Article

References (25)

1. Zwirner NW, Fernandez-Vina MA, Stastny P: MICA, a new polymorphic HLA-related antigen, is expressed mainly by keratinocytes, endothelial cells, and monocytes. Immunogenetics 47:139, 1998.
2. Groh V, Steinle A, Bauer S, Spies T: Recognition of stress-induced MHC molecules by intestinal epithelial gammadelta T cells. Science 279:1737, 1998.
3. Bauer S, Groh V, Wu J, Steinle A, Phillips JH, Lanier LL, Spies T: Activation of NK cells and T cells by NKG2D, a receptor for stress-inducible MICA. Science 285:727, 1999.
4. Groh V, Rhinehart R, Randolph-Habecker J, Topp MS, Riddell SR, Spies T: Costimulation of CD8alphabeta T cells by NKG2D via engagement by MIC induced on virus-infected cells. Nat Immunol 2:255, 2001.
5. Zwirner NW, Marcos CY, Mirbaha F, Zou Y, Stastny P: Identification of MICA as a new polymorphic alloantigen recognized by antibodies in sera of organ transplant recipients. Hum Immunol 61:917, 2000.
6. Saiki RK, Bugawan TL, Horn GT, Mullis KB, Erlich HA: Analysis of enzymatically amplified beta-globin and HLA-DQ alpha DNA with allele-specific oligonucleotide probes. Nature 324:163, 1986.
7. Syvanen AC, Aalto-Setala K, Harju L, Kontula K, Soderlund H: A primer-guided nucleotide incorporation assay in the genotyping of apolipoprotein E. Genomics 8:684, 1990.
8. Barany F: Genetic disease detection and DNA amplification using cloned thermostable ligase. Proc Natl Acad Sci U S A 88:189, 1991.
9. Parsons BL, Heflich RH: Genotypic selection methods for the direct analysis of point mutations. Mutat Res 387:97, 1997.
10. Syvanen AC: From gels to chips: "minisequencing" primer extension for analysis of point mutations and single nucleotide polymorphisms. Hum Mutat 13:1, 1999.
11. Cai H, White PS, Torney D, Deshpande A, Wang Z, Keller RA, Marrone B, Nolan JP: Flow cytometry-based minisequencing: a new platform for high-throughput single-nucleotide polymorphism scoring. Genomics 66:135, 2000.
12. Taylor JD, Briley D, Nguyen Q, Long K, Iannone MA, Li MS, Ye F, Afshari A, Lai E, Wagner M, Chen J, Weiner MP: Flow cytometric platform for high-throughput single nucleotide polymorphism analysis. Biotechniques 30:661, 2001.
13. Chen J, Iannone MA, Li MS, Taylor JD, Rivers P, Nelsen AJ, Slentz-Kesler KA, Roses A, Weiner MP: A microsphere-based assay for multiplexed single nucleotide polymorphism analysis using single base chain extension. Genome Res 10:549, 2000.
14. Ye F, Li MS, Taylor JD, Nguyen Q, Colton HM, Casey WM, Wagner M, Weiner MP, Chen J: Fluorescent microsphere-based readout technology for multiplexed human single nucleotide polymorphism analysis and bacterial identification. Hum Mutat 17:305, 2001.
15. Fodil N, Laloux L, Wanner V, Pellet P, Hauptmann G, Mizuki N, Inoko H, Spies T, Theodorou I, Bahram S: Allelic repertoire of the human MHC class I MICA gene. Immunogenetics 44:351, 1996.
16. Zhang Y, Lazaro AM, Lavingia B, Stastny P: Typing for all known MICA alleles by group-specific PCR and SSOP. Hum Immunol 62:620, 2001.
17. Ota M, Katsuyama Y, Mizuki N, Ando H, Furihata K, Ono S, Pivetti-Pezzi P, Tabbara KF, Palimeris GD, Nikbin B, Davatchi F, Chams H, Geng Z, Bahram S, Inoko H: Trinucleotide repeat polymorphism within exon 5 of the MICA gene (MHC class I chain-related gene A): allele frequency data in the nine population groups Japanese, Northern Han, Hui, Uygur, Kazakhstan, Iranian, Saudi Arabian, Greek and Italian. Tissue Antigens 49:448, 1997.
18. Perez-Rodriguez M, Corell A, Arguello JR, Cox ST, McWhinnie A, Marsh SG, Madrigal JA: A new MICA allele with ten alanine residues in the exon 5 microsatellite. Tissue Antigens 55:162, 2000.
19. Fodil N, Pellet P, Laloux L, Hauptmann G, Theodorou I, Bahram S: MICA haplotypic diversity. Immunogenetics 49:557, 1999.
20. Zhang Y, Lazaro AM, Zou Y, Lavingia B, Moraes EM, Moraes RJ, Stastny P: MICA polymorphism in South American Indians. Immunogenetics 53:900, 2002.
21. Komatsu-Wakui M, Tokunaga K, Ishikawa Y, Kashiwase K, Moriyama S, Tsuchiya N, Ando H, Shiina T, Geraghty DE, Inoko H, Juji T: MIC-A polymorphism in Japanese and a MIC-A-MIC-B null haplotype. Immunogenetics 49:620, 1999.
22. Just JJ, King MC, Thomson G, Klitz W: African-American HLA class II allele and haplotype diversity. Tissue Antigens 49:547, 1997.
23. Dawkins R, Leelayuwat C, Gaudieri S, Tay G, Hui J, Cattley S, Martinez P, Kulski J: Genomics of the major histocompatibility complex: haplotypes, duplication, retroviruses and disease. Immunol Rev 167:275, 1999.
24. Perez-Rodriguez M, Arguello JR, Fischer G, Corell A, Cox ST, Robinson J, Hossain E, McWhinnie A, Travers PJ, Marsh SG, Madrigal JA: Further polymorphism of the MICA gene. Eur J Immunogenet 29:35, 2002.
25. Stephens HA: MICA and MICB genes: can the enigma of their polymorphism be resolved? Trends Immunol 22: 378, 2001.