Carbon isotopic fractionation by Archaeans and other thermophilic prokaryotes

Organic Geochemistry

Volumn 34, Issue 3, 2003, Pages 345-356

  House, Christopher H ^a   Schopf, J William ^b   Stetter, Karl O ^c  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF REGENSBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ISOTOPIC FRACTIONATION;

CARBON; ISOTOPES; MICROORGANISMS;

FRACTIONATION;

CARBON ISOTOPE; FRACTIONATION; MICROBIAL ACTIVITY; ORGANIC GEOCHEMISTRY; PROKARYOTE;

EID: 0037231805     PISSN: 01466380     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0146-6380(02)00237-1     Document Type: Article

References (40)

1. Beh, M., Strauss, G., Huber, R., Stetter, K.O., Fuchs, G., 1993. Enzymes of the reductive citric acid cycle in the autotrophic eubacterium Aquifex pyrophilus and in the archeabacterium Thermoproteus neutrophilus. Archives of Microbiology 160, 306-311.
2. Belyaev, S.S., Wolkin, R., Kenealy, W.R., DeNiro, M.J., Epstein, S., Zeikus, J.G., 1983. Methanogenic bacteria from the Bondyuzhskoe Oil field: general characterization and analysis of stable-carbon isotopic fractionation. Applied and Environmental Microbiology 45 (2), 691-697.
3. 2 reduction. Organic Geochemistry 25 (3/4), 255-262.
4. Calder, J.A., Parker, P.L., 1973. Geochemical implications of induced changes in C13 fractionation by blue-green algae. Geochimica et Cosmochimica Acta 37, 133-140.
5. Fitz-Gibbon, S.T., Ladner, H., Kim, U.J., Stetter, K.O., Simon, M.I., Miller, J.H., 2002. Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum. Proceedings of the National Academy of Sceinces 99, 984-989.
6. Fuchs, G., Thauer, R., Ziegler, H., Stichler, W., 1979. Carbon isotope fractionation by Methanobacterium thermoautotrophicum. Archives of Microbiology 120, 135-139.
7. 2 fixation pathway in Methanobacterium thermoautotrophicum. Zentralbl. Bacteroil. Mikrobiol. Hyg. 1 Abt. Orig. C 3, 277-288.
8. Goericke et al. In Lajtha and Michener (Eds.). Stable Isotopes in Ecology and Environmental Science. Blackwell, 1994.
9. Goyet, C., Poisson, A., 1989. New determination of carbonic acid dissociation constants in seawater as a function of temperature and salinity. Deep-Sea Research 36 (11), 1635-1654.
10. Herbel, M.J., Johnson, T.M., Oremland, R.S., Bullen, T.D., 2000. Fractionation of selenium isotopes during bacterial respiratory reduction of selenium oxyanions. Geochimica et Cosmochimica Acta 64, 3701-3709.
11. 2 fixation of Chloroflexus aurantiacus. Archives of Microbiology 145, 173-180.
12. House, C.H., 1999. Carbon Isotopic Fractionation by Diverse Extant and Fossil Prokaryotes and Microbial Phylogenetic Diversity Revealed Through Genomics. Department of Earth and Space Sciences. UCLA, Los Angeles, pp. 208.
13. House, C.H., Schopf, J.W., McKeegan, K.D., Coath, C.D., Harrison, T.M., Stetter, K.O., 2000. The carbon isotopic composition of individual Precambrian microfossils. Geology 28, 707-710.
14. Ishii, M., Miyake, T., Satoh, T., Sugiyams, H., Oshima, Y., Kodama, T., Igarashi, Y., 1996. Autotrophic carbon dioxide fixation in Acidianus brierleyi. Archives of Microbiology 166, 368-371.
15. 2 and energy metabolism in a thermophilic, aerobic and obligately autotrophic hydrogen-oxidizing bacterium Hydrogenobacter thermophilus strain TK-6. Nippon Nogeikagaku Kaishi 72, 1165-1170.
16. Jahnke, L.L., Summons, R.E., Hope, J.M., Des Marais, D.J., 1999. Carbon isotopic fractionation in lipids from methanotrophic bacteria II: the effects of physiology and environmental parameters on the biosynthesis and isotopic signatures of biomarkers. Geochimica et Cosmochimica Acta 63, 79-93.
17. Jahnke, L.L., Eder, W., Huber, R., Hope, J.M., Hinrichs, K.U., Hayes, J.M., Des Marais, D.J., Cady, S.L., Summons, R.E., 2001. Signature lipids and stable carbon isotope analysis of octopus spring hyperthermophilic communities compared with those of aquificales representatives. Applied and Environmental Microbiology 67, 5179-5189.
18. Klenk, H.P., Clayton, R.A., Tomb, J.F., White, O., Nelson, K.E., Ketchum, K.A., Dodson, J.R., Gwinn, M., Hickey, E.K., Peterson, J.D., et al., 1997. The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 390, 364-370.
19. Laws, E.A., Popp, B.N., Bidigare, R.R., Kennicutt, M.C., Macko, S.A., 1995. Dependence of phytoplankton carbon isotopic composition on growth rate and [CO2]aq: Theoretical considerations and experimental results. Geochimica et Cosmochimica Acta 59, 1131-1138.
20. Melander, L., Saunders, W.H., 1980. Reaction Rates of Isotopic Molecules. Wiley, New York.
21. Menendez, C., Bauer, Z., Huber, H., Gad'on, N., Stetter, K.O., Fuchs, G., 1999. Presence of acetyl coenzyme A (CoA) carboxylase and propionyl-CoA carboxylase in autotrophic crenarchaeota and indication for operation of a 3-hydroxypropionate cycle in autotrophic carbon fixation. Journal of Bacteriology 181, 1088-1098.
22. Mirkin, E., Ruby, E., 1991. Stable carbon isotope fractionation in cultured chemoautotrophic bacteria. In: General Meeting of the American Society for Microbiology. 91, pp. 199.
23. 13C of algae. Origins of Life 12, 377-390.
24. Mook, W.G., Bommerson, J.C., Staverman, W.H., 1974. Carbon isotope fractionation between dissolved bicarbonate and gaseous carbon dioxide. Earth and Planetary Science Letters 22, 169-176.
25. Pardue, J.W., Scalan, R.S., Van Baalen, C., Parker, P.L., 1976. Maximum carbon isotope fractionation in photosynthesis by blue-green algae and a green alga. Geochimica et Cosmochimica Acta 1976, 309-312.
26. Popp, B.N., Laws, E.A., Bidigare, R.P., Dore, J.E., Hanson, K.L., Wakeham, S.G., 1998. Effect of phytoplankton cell geometry on carbon isotopic fractionation. Geochemica et Cosmochimica Acta 62, 69-77.
27. 2 fixation pathways. Zeitschrift für Naturforschung 44c, 397-402.
28. Quandt, L., Gottschalk, H., Ziegler, H., Stichler, W., 1977. Isotope discrimination by photosynthetic bacteria. FEMS Microbiology Letters 1, 125-128.
29. Robinson, J.J., Cavanaugh, C.M., 1995. Expression of form I and form II Rubisco in chemoautotrophic symbioses: implications for the interpretation of stable carbon isotope values. Limnology and Oceanography 40, 1496-1502.
30. Roeske, C.A., O'Leary, M.H., 1984. Carbon isotope effects on the enzyme on the enzyme-catalyzed carboxylation of ribulose bisphosphate. Biochemistry 23, 6275-6284.
31. Roeske, C.A., O'Leary, M.H., 1985. Carbon isotope effect on carboxylation of ribulose bisphosphate catalyzed by ribulosebisphosphate carboxylase from Rhodospirillum rubrum. Biochemistry 24, 1603-1607.
32. Ruby, E.G., Jannasch, H.W., Deuser, W.G., 1987. Fractionation of stable carbon isotopes during chemoautotrophic growth of sulfur-oxidizing bacteria. Applied and Environmental Microbiology 53 (8), 1940-1943.
33. 2 fixation in bacterial photosynthesis studied by the carbon isotope fractionation technique. Archives of Microbiology 112, 35-38.
34. Sprott, G.D., Ekiel, I., Patel, G.B., 1993. Metabolic pathways in Methanococcus jannaschii and other methanogenic bacteria. Applied and Environmental Microbiology 59, 1092-1098.
35. Summons, R.E., Jahnke, L.L., Roksandic, Z., 1994. Carbon isotopic fractionation in lipids from methanotrophic bacteria: relevance from interpretation of the geochemical record of biomarkers. Geochimica et Cosmochimica Acta 58, 2853-2863.
36. 2 fixation in Archaeoglobus lithotrophicus and the lack of carbon monoxide in the heterotrophic A. profundus. Archives of Microbiology 163, 112-118.
37. 2O in Ferroglobus placidus. Archives of Microbiology 167, 19-23.
38. Weiss, R.F., 1974. Carbon dioxide in water and seawater: the solubility of a non-ideal gas. Marine Chemistry 2, 203-215.
39. Wong, W., Sackett, W.M., Benedict, C.R., 1975. Isotope fractionation in photosynthetic bacteria during carbon dioxide assimilation. Plant Physiology 55, 475-479.
40. 2. Geochimica et Cosmochimica Acta 59 (1), 107-114.