-
1
-
-
0023777735
-
Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli
-
Amann, E., B. Ochs, and K. J. Abel. 1988. Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli. Gene 69:301-315.
-
(1988)
Gene
, vol.69
, pp. 301-315
-
-
Amann, E.1
Ochs, B.2
Abel, K.J.3
-
2
-
-
0029790352
-
Behavioral responses of Escherichia coli to changes in redox potential
-
Bespalov, V. A., I. B. Zhulin, and B. L. Taylor. 1996. Behavioral responses of Escherichia coli to changes in redox potential. Proc. Natl. Acad. Sci. USA 93:10084-10089.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 10084-10089
-
-
Bespalov, V.A.1
Zhulin, I.B.2
Taylor, B.L.3
-
3
-
-
0033534368
-
Structure of CheA, a signal-transducing histidine kinase
-
Bilwes, A. M., L. A. Alex, B. R. Crane, and M. I. Simon. 1999. Structure of CheA, a signal-transducing histidine kinase. Cell 96:131-141.
-
(1999)
Cell
, vol.96
, pp. 131-141
-
-
Bilwes, A.M.1
Alex, L.A.2
Crane, B.R.3
Simon, M.I.4
-
4
-
-
0006611890
-
Transmembrane signal transduction in bacterial chemotaxis involves ligand-dependent activation of phosphate group transfer
-
Borkovich, K. A., N. Kaplan, J. F. Hess, and M. I. Simon. 1989. Transmembrane signal transduction in bacterial chemotaxis involves ligand-dependent activation of phosphate group transfer. Proc. Natl. Acad. Sci. USA 86:1208-1212.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 1208-1212
-
-
Borkovich, K.A.1
Kaplan, N.2
Hess, J.F.3
Simon, M.I.4
-
5
-
-
0037151097
-
CheW binding interactions with CheA and Tar: Importance for chemotaxis signaling in Escherichia coli
-
Boukhvalova, M., F. W. Dahlquist, and R. C. Stewart. 2002. CheW binding interactions with CheA and Tar: importance for chemotaxis signaling in Escherichia coli. J. Biol. Chem. 277:22251-22259.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 22251-22259
-
-
Boukhvalova, M.1
Dahlquist, F.W.2
Stewart, R.C.3
-
6
-
-
0037189482
-
CheA kinase and chemoreceptor interaction surfaces on CheW
-
Boukhvalova, M., R. VanBruggen, and R. C. Stewart. 2002. CheA kinase and chemoreceptor interaction surfaces on CheW. J. Biol. Chem. 277:23596-23603.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 23596-23603
-
-
Boukhvalova, M.1
VanBruggen, R.2
Stewart, R.C.3
-
7
-
-
0037155843
-
Molecular information processing: Lessons from bacterial chemotaxis
-
Bourret, R. B., and A. M. Stock. 2002. Molecular information processing: lessons from bacterial chemotaxis. J. Biol. Chem. 277:9625-9628.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 9625-9628
-
-
Bourret, R.B.1
Stock, A.M.2
-
8
-
-
0034460297
-
How signals are heard during bacterial chemotaxis: Protein-protein interactions in sensory signal propagation
-
Bren, A., and M. Eisenbach. 2000. How signals are heard during bacterial chemotaxis: protein-protein interactions in sensory signal propagation. J. Bacteriol. 182:6865-6873.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 6865-6873
-
-
Bren, A.1
Eisenbach, M.2
-
9
-
-
0033106244
-
Evaluation and improvement of multiple sequence methods for protein secondary structure prediction
-
Cuff, J. A., and G. J. Barton. 1999. Evaluation and improvement of multiple sequence methods for protein secondary structure prediction. Proteins 34: 508-519.
-
(1999)
Proteins
, vol.34
, pp. 508-519
-
-
Cuff, J.A.1
Barton, G.J.2
-
10
-
-
0000228203
-
A model of evolutionary change in proteins
-
M. O. Dayhoff, (ed.). National Biomedical Research Foundation, Washington, D.C.
-
Dayhoff, M. O., R. Schwartz, and B. C. Orcutt. 1978. A model of evolutionary change in proteins, p. 345-352. In M. O. Dayhoff, (ed.), Atlas of protein sequences and structures, vol. 5, Suppl. 3. National Biomedical Research Foundation, Washington, D.C.
-
(1978)
Atlas of Protein Sequences and Structures
, vol.5
, Issue.SUPPL. 3
, pp. 345-352
-
-
Dayhoff, M.O.1
Schwartz, R.2
Orcutt, B.C.3
-
11
-
-
0031455398
-
The two-component signaling pathway of bacterial chemotaxis: A molecular view of signal transduction by receptors, kinases, and adaptation enzymes
-
Falke, J. J., R. B. Bass, S. L. Butler, S. A. Chervitz, and M. A. Danielson. 1997. The two-component signaling pathway of bacterial chemotaxis: a molecular view of signal transduction by receptors, kinases, and adaptation enzymes. Annu. Rev. Cell Dev. Biol. 13:457-512.
-
(1997)
Annu. Rev. Cell Dev. Biol.
, vol.13
, pp. 457-512
-
-
Falke, J.J.1
Bass, R.B.2
Butler, S.L.3
Chervitz, S.A.4
Danielson, M.A.5
-
12
-
-
0037177560
-
Evolutionary rate in the protein interaction network
-
Fraser, H. B., A. E. Hirsh, L. M. Steinmetz, C. Scharfe, and M. W. Feldman. 2002. Evolutionary rate in the protein interaction network. Science 296:750-752.
-
(2002)
Science
, vol.296
, pp. 750-752
-
-
Fraser, H.B.1
Hirsh, A.E.2
Steinmetz, L.M.3
Scharfe, C.4
Feldman, M.W.5
-
13
-
-
0026808410
-
Assembly of an MCP receptor, CheW and kinase CheA complex in the bacterial chemotaxis signal transduction pathway
-
Gegner, J. A., D. R. Graham, A. F. Roth, and F. W. Dahlquist. 1992. Assembly of an MCP receptor, CheW and kinase CheA complex in the bacterial chemotaxis signal transduction pathway. Cell 70:975-982.
-
(1992)
Cell
, vol.70
, pp. 975-982
-
-
Gegner, J.A.1
Graham, D.R.2
Roth, A.F.3
Dahlquist, F.W.4
-
14
-
-
0034747078
-
124-257 complex
-
124-257 complex. Acta Crystallogr. D 57:44-51.
-
(2000)
Acta Crystallogr.
, vol.D57
, pp. 44-51
-
-
Gouet, P.1
Chinardet, N.2
Welch, M.3
Guillet, V.4
Cabantous, S.5
Birck, C.6
Mourey, L.7
Samama, J.-P.8
-
15
-
-
0036166306
-
The solution structure and interactions of CheW from Thermotoga maririma
-
Griswold, I. J., H. Zhou, M. Matison, R. V. Swanson, L. P. McIntosh, M. I. Simon, and F. W. Dahlquist. 2002. The solution structure and interactions of CheW from Thermotoga maririma. Nat. Struct. Biol. 9:121-125.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 121-125
-
-
Griswold, I.J.1
Zhou, H.2
Matison, M.3
Swanson, R.V.4
McIntosh, L.P.5
Simon, M.I.6
Dahlquist, F.W.7
-
16
-
-
0037133375
-
A major chemotaxis gene cluster in Azospirillum brasilense and relationships between chemotaxis operons in α-proteobacteria
-
Hauwaerts, D., G. Alexandre, S. K. Das, J. Vanderleyden, and I. B. Zhulin. 2002. A major chemotaxis gene cluster in Azospirillum brasilense and relationships between chemotaxis operons in α-proteobacteria. FEMS Microbiol. Lett. 208:61-67.
-
(2002)
FEMS Microbiol. Lett.
, vol.208
, pp. 61-67
-
-
Hauwaerts, D.1
Alexandre, G.2
Das, S.K.3
Vanderleyden, J.4
Zhulin, I.B.5
-
17
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff, S., and J. G. Henikoff. 1992. Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci. USA 89:10915-10919.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
18
-
-
0024281410
-
Phosphorylation of three proteins in the signaling pathway of bacterial chemotaxis
-
Hess, J. F., K. Oosawa, N. Kaplan, and M. I. Simon. 1988. Phosphorylation of three proteins in the signaling pathway of bacterial chemotaxis. Cell 53:79-87.
-
(1988)
Cell
, vol.53
, pp. 79-87
-
-
Hess, J.F.1
Oosawa, K.2
Kaplan, N.3
Simon, M.I.4
-
19
-
-
0035174242
-
Crystal structure of an activated response regulator bound to its target
-
Lee, S. Y., H. S. Cho, J. G. Pelton, D. Yan, R. K. Henderson, D. S. King, L. Huang, S. Kustu, E. A. Berry, and D. E. Wemmer. 2001. Crystal structure of an activated response regulator bound to its target. Nat. Struct. Biol. 8:52-65.
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 52-65
-
-
Lee, S.Y.1
Cho, H.S.2
Pelton, J.G.3
Yan, D.4
Henderson, R.K.5
King, D.S.6
Huang, L.7
Kustu, S.8
Berry, E.A.9
Wemmer, D.E.10
-
20
-
-
0030606898
-
Molecular evolution of the C-terminal cytoplasmic domain of a superfamily of bacterial receptors involved in taxis
-
Le Moual, H., and D. E. Koshland, Jr. 1996. Molecular evolution of the C-terminal cytoplasmic domain of a superfamily of bacterial receptors involved in taxis. J. Mol. Biol. 261:568-585.
-
(1996)
J. Mol. Biol.
, vol.261
, pp. 568-585
-
-
Le Moual, H.1
Koshland D.E., Jr.2
-
21
-
-
0024316868
-
Role of CheW protein in coupling membrane receptors to the intracellular signaling system of bacterial chemotaxis
-
Liu, J., and J. S. Parkinson. 1989. Role of CheW protein in coupling membrane receptors to the intracellular signaling system of bacterial chemotaxis. Proc. Natl. Acad. Sci. USA 86:8703-8707.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 8703-8707
-
-
Liu, J.1
Parkinson, J.S.2
-
22
-
-
0036134757
-
Heterotachy, an important process in protein evolution
-
Lopez, P., D. Casane, and H. Philippe. 2002. Heterotachy, an important process in protein evolution. Mol. Biol. Evol. 19:1-7.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1-7
-
-
Lopez, P.1
Casane, D.2
Philippe, H.3
-
23
-
-
0033603635
-
Identification of the binding surfaces on CheY for two of its targets, the phosphatase CheZ and the flagellar switch protein FliM
-
McEvoy, M. M., A. Bren, M. Eisenbach, and F. W. Dahlquist. 1999. Identification of the binding surfaces on CheY for two of its targets, the phosphatase CheZ and the flagellar switch protein FliM. J. Mol. Biol. 289:1423-1433.
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 1423-1433
-
-
McEvoy, M.M.1
Bren, A.2
Eisenbach, M.3
Dahlquist, F.W.4
-
24
-
-
0032560570
-
Two binding modes reveal flexibility in kinase/response regulator interactions in the bacterial chemotaxis pathway
-
McEvoy, M. M., A. C. Hausrath, G. B. Randolph, S. J. Remington, and F. W. Dahlquist. 1998. Two binding modes reveal flexibility in kinase/response regulator interactions in the bacterial chemotaxis pathway. Proc. Natl. Acad. Sci. USA 95:7333-7338.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 7333-7338
-
-
McEvoy, M.M.1
Hausrath, A.C.2
Randolph, G.B.3
Remington, S.J.4
Dahlquist, F.W.5
-
25
-
-
0345062357
-
Universally conserved positions in protein folds: Reading evolutionary signals about stability, folding kinetics and function
-
Mirny, L. A., and E. I. Shakhnovich. 1999. Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function. J. Mol. Biol. 291:177-196.
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 177-196
-
-
Mirny, L.A.1
Shakhnovich, E.I.2
-
27
-
-
0018189924
-
Complementation analysis and deletion mapping of Escherichia coli mutants defective in chemotaxis
-
Parkinson, J. S. 1978. Complementation analysis and deletion mapping of Escherichia coli mutants defective in chemotaxis. J. Bacteriol. 135:45-53.
-
(1978)
J. Bacteriol.
, vol.135
, pp. 45-53
-
-
Parkinson, J.S.1
-
28
-
-
0035399936
-
On the conservation of protein sequences in evolution
-
Philippe, H., and P. Lopez. 2001. On the conservation of protein sequences in evolution. Trends Biochem. Sci. 26:414-416.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 414-416
-
-
Philippe, H.1
Lopez, P.2
-
29
-
-
0029889988
-
PHD: Predicting one-dimensional protein structure by profile-based neural networks
-
Rost, B. 1996. PHD: predicting one-dimensional protein structure by profile-based neural networks. Methods Enzymol. 266:525-539.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 525-539
-
-
Rost, B.1
-
30
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
31
-
-
0024420315
-
Role of the CheW protein in bacterial chemotaxis: Overexpression is equivalent to absence
-
Sanders, D. A., B. Mendez, and D. E. Koshland, Jr. 1989. Role of the CheW protein in bacterial chemotaxis: overexpression is equivalent to absence. J. Bacteriol. 171:6271-6278.
-
(1989)
J. Bacteriol.
, vol.171
, pp. 6271-6278
-
-
Sanders, D.A.1
Mendez, B.2
Koshland D.E., Jr.3
-
32
-
-
0036196317
-
Sensory transduction to the flagellar motor of Sinorhizobium meliloti
-
Scharf, B., and R. Schmitt. 2002. Sensory transduction to the flagellar motor of Sinorhizobium meliloti. J. Mol. Microbiol. Biotechnol. 4:183-186.
-
(2002)
J. Mol. Microbiol. Biotechnol.
, vol.4
, pp. 183-186
-
-
Scharf, B.1
Schmitt, R.2
-
33
-
-
0033977153
-
Identification of a fourth cheY gene in Rhodobacter sphaeroides and interspecies interaction within the bacterial signal transduction pathway
-
Shah, D. S. H., S. L. Porter, D. C. Harris, G. H. Wadhams, P. A. Hamblin, and J. P. Armitage. 2000. Identification of a fourth cheY gene in Rhodobacter sphaeroides and interspecies interaction within the bacterial signal transduction pathway. Mol. Microbiol. 35:101-112.
-
(2000)
Mol. Microbiol.
, vol.35
, pp. 101-112
-
-
Shah, D.S.H.1
Porter, S.L.2
Harris, D.C.3
Wadhams, G.H.4
Hamblin, P.A.5
Armitage, J.P.6
-
34
-
-
14444278048
-
Flagellar motor-switch binding face of CheY and the biochemical basis of suppression by CheY mutants that compensate for motor-switch defects in Escherichia coli
-
Shulda, D., X. Y. Zhu, and P. Matsumura. 1998. Flagellar motor-switch binding face of CheY and the biochemical basis of suppression by CheY mutants that compensate for motor-switch defects in Escherichia coli. J. Biol. Chem. 273:23993-23999.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 23993-23999
-
-
Shulda, D.1
Zhu, X.Y.2
Matsumura, P.3
-
35
-
-
0035947730
-
Alteration of a nonconserved active site residue in the chemotaxis response regulator CheY affects phosphorylation and interaction with CheZ
-
Silversmith, R. E., J. G. Smith, G. P. Guanga, J. T. Les, and R. B. Bourret. 2001. Alteration of a nonconserved active site residue in the chemotaxis response regulator CheY affects phosphorylation and interaction with CheZ. J. Biol. Chem. 276:18478-18484.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 18478-18484
-
-
Silversmith, R.E.1
Smith, J.G.2
Guanga, G.P.3
Les, J.T.4
Bourret, R.B.5
-
36
-
-
0037022603
-
Inference of functional regions in proteins by quantification of evolutionary constraints
-
Simon, A. L., E. A. Stone, and A. Sidow, 2002. Inference of functional regions in proteins by quantification of evolutionary constraints. Proc. Natl. Acad. Sci. USA 99:2912-2917.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 2912-2917
-
-
Simon, A.L.1
Stone, E.A.2
Sidow, A.3
-
37
-
-
0033792542
-
Rapid phosphotransfer to CheY from a CheA protein lacking the CheY-binding domain
-
Stewart, R. C., K. Jahreis, and J. S. Parkinson. 2000. Rapid phosphotransfer to CheY from a CheA protein lacking the CheY-binding domain. Biochemistry 39:13157-13165.
-
(2000)
Biochemistry
, vol.39
, pp. 13157-13165
-
-
Stewart, R.C.1
Jahreis, K.2
Parkinson, J.S.3
-
38
-
-
0032964297
-
BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences
-
Tatusova, T. A., and T. L. Madden. 1999. BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol. Lett. 174: 247-250.
-
(1999)
FEMS Microbiol. Lett.
, vol.174
, pp. 247-250
-
-
Tatusova, T.A.1
Madden, T.L.2
-
39
-
-
0036306115
-
Why are proteins so robust to site mutations?
-
Taverna, D. M., and R. A. Goldstein. 2002. Why are proteins so robust to site mutations? J. Mol. Biol. 315:479-484.
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 479-484
-
-
Taverna, D.M.1
Goldstein, R.A.2
-
40
-
-
0031574072
-
The CLUSTAL_X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
41
-
-
0025741662
-
Crystal structure of Escherichia coli CheY refined at 1.7-Å resolution
-
Volz, K., and P. Matsumura. 1991. Crystal structure of Escherichia coli CheY refined at 1.7-Å resolution. J. Biol. Chem. 266:15511-15519.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 15511-15519
-
-
Volz, K.1
Matsumura, P.2
-
42
-
-
0031975752
-
Structure of the CheY-binding domain of histidine kinase CheA in complex with CheY
-
Welch, M., N. Chinardet, L. Mourey, C. Birck, and J.-P. Samama. 1998. Structure of the CheY-binding domain of histidine kinase CheA in complex with CheY. Nat. Struct. Biol. 5:25-29.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 25-29
-
-
Welch, M.1
Chinardet, N.2
Mourey, L.3
Birck, C.4
Samama, J.-P.5
-
43
-
-
0027517812
-
Phosphorylation-dependent binding of a signal molecule to the flagellar switch of bacteria
-
Welch, M., K. Oosawa, S. Aizawa, and M. Eisenbach. 1993. Phosphorylation-dependent binding of a signal molecule to the flagellar switch of bacteria. Proc. Natl. Acad. Sci. USA 90:8787-8791.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 8787-8791
-
-
Welch, M.1
Oosawa, K.2
Aizawa, S.3
Eisenbach, M.4
-
44
-
-
0007809063
-
Migration of bacteria in semisolid agar
-
Wolfe, A. J., and H. C, Berg. 1989. Migration of bacteria in semisolid agar. Proc. Natl. Acad. Sci. USA 86:6973-6977.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 6973-6977
-
-
Wolfe, A.J.1
Berg, H.C.2
-
45
-
-
0036312369
-
Structure and catalytic mechanism of the E. coli chemotaxis phosphatase CheZ
-
Zhao, R., E. J. Collins, R. B. Bourret, and R. E. Silversmith. 2002. Structure and catalytic mechanism of the E. coli chemotaxis phosphatase CheZ. Nat. Struct. Biol. 9:570-575.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 570-575
-
-
Zhao, R.1
Collins, E.J.2
Bourret, R.B.3
Silversmith, R.E.4
-
46
-
-
0034964703
-
Thc superfamily of chemotaxis transducers: From physiology to genomics and back
-
Zhulin, I. B. 2001. Thc superfamily of chemotaxis transducers: from physiology to genomics and back. Adv. Microb. Physiol. 45:157-198.
-
(2001)
Adv. Microb. Physiol.
, vol.45
, pp. 157-198
-
-
Zhulin, I.B.1
|