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Volumn 33, Issue 1, 2003, Pages 29-39

A diversity of U1 small nuclear RNAs in the silk moth Bombyx mori

Author keywords

Bombyx mori; RNA; Secondary structure; Small nuclear RNAs; snRNA Evolution; U1 snRNA

Indexed keywords

PRIMER DNA; SMALL NUCLEAR RNA; U1 SMALL NUCLEAR RNA;

EID: 0037211447     PISSN: 09651748     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0965-1748(02)00164-9     Document Type: Article
Times cited : (11)

References (40)
  • 1
    • 0021946525 scopus 로고
    • Isolation and partial characterization of U1-U6 small RNAs from Bombyx mori
    • Adams, D.S., Herrera, R.J., Luhrmann, R., Lizardi, P.M., 1985. Isolation and partial characterization of U1-U6 small RNAs from Bombyx mori. Biochemistry 24, 117-125.
    • (1985) Biochemistry , vol.24 , pp. 117-125
    • Adams, D.S.1    Herrera, R.J.2    Luhrmann, R.3    Lizardi, P.M.4
  • 2
    • 0000443161 scopus 로고
    • Comparison of U-small nuclear RNA levels in tissues of the silkmoth Bombyx mori
    • Adams, D.S., Herrera, R.J., 1987. Comparison of U-small nuclear RNA levels in tissues of the silkmoth Bombyx mori. Comp. Biochem. Physiol. 88B, 415-420.
    • (1987) Comp. Biochem. Physiol. , vol.88 B , pp. 415-420
    • Adams, D.S.1    Herrera, R.J.2
  • 3
    • 0035032822 scopus 로고    scopus 로고
    • Activation of a cryptic' splice site by U1 snRNA
    • Alvarez, C.J., Wise. J.A., 2001. Activation of a cryptic' splice site by U1 snRNA. RNA 7, 342-350.
    • (2001) RNA , vol.7 , pp. 342-350
    • Alvarez, C.J.1    Wise, J.A.2
  • 5
    • 0001468848 scopus 로고    scopus 로고
    • Splicing of precursors to mRNAs by the spliceosome
    • Gesteland, R.F., Cech, T., Atkins, J.F. (Eds.). Cold Spring Harbor Press, Cold Spring Harbor, NY
    • Burge, C.B., Tuschl, T., Sharp, P.A., 1999. Splicing of precursors to mRNAs by the spliceosome. In: Gesteland, R.F., Cech, T., Atkins, J.F. (Eds.), The RNA World, the Nature of Modern RNA Suggests a Prebiotic RNA. Cold Spring Harbor Press, Cold Spring Harbor, NY, pp. 525-560.
    • (1999) The RNA World, the Nature of Modern RNA Suggests a Prebiotic RNA , pp. 525-560
    • Burge, C.B.1    Tuschl, T.2    Sharp, P.A.3
  • 6
    • 0030737869 scopus 로고    scopus 로고
    • Control of mouse U1 snRNA gene expression during in vitro differentiation of mouse embryonic stem cells
    • Cheng, Y., Lund, E., Kahan, B.W., Dahlberg, J.E., 1997. Control of mouse U1 snRNA gene expression during in vitro differentiation of mouse embryonic stem cells. Nucleic Acids Res. 25 (11), 2197-2204.
    • (1997) Nucleic Acids Res. , vol.25 , Issue.11 , pp. 2197-2204
    • Cheng, Y.1    Lund, E.2    Kahan, B.W.3    Dahlberg, J.E.4
  • 7
    • 0027191972 scopus 로고
    • U1 small nuclear RNAs with altered specificity can be stably expressed in mammalian cells and promote permanent changes in pre-mRNA splicing
    • Cohen, J.B., Broz, S.D., Levinson, A.D., 1993. U1 small nuclear RNAs with altered specificity can be stably expressed in mammalian cells and promote permanent changes in pre-mRNA splicing. Mol. Cell. Biol. 13, 2666-2676.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 2666-2676
    • Cohen, J.B.1    Broz, S.D.2    Levinson, A.D.3
  • 8
    • 0028939315 scopus 로고
    • The U1 small nuclear ribonucleoprotein/5′ splice site interaction affects U2AF65 binding to the downstream 3′ splice site
    • Cote, J., Beaudoin, J., Tacke, R., Chabot, B., 1995. The U1 small nuclear ribonucleoprotein/5′ splice site interaction affects U2AF65 binding to the downstream 3′ splice site. J. Biol. Chem. 270, 4031-4036.
    • (1995) J. Biol. Chem. , vol.270 , pp. 4031-4036
    • Cote, J.1    Beaudoin, J.2    Tacke, R.3    Chabot, B.4
  • 9
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences, a maximum likelihood approach
    • Felsenstein, J., 1981. Evolutionary trees from DNA sequences, a maximum likelihood approach. J. Mol. Evol. 17, 368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 10
    • 0021714533 scopus 로고
    • Differential expression of multiple U1 small nuclear RNAs in oocytes and embryos of Xenopus laevis
    • Forbes, D.J., Kirschner, M.W., Caput, D., Dahlberg, J.E., Lurid, E., 1984. Differential expression of multiple U1 small nuclear RNAs in oocytes and embryos of Xenopus laevis. Cell 38, 681-689.
    • (1984) Cell , vol.38 , pp. 681-689
    • Forbes, D.J.1    Kirschner, M.W.2    Caput, D.3    Dahlberg, J.E.4    Lurid, E.5
  • 11
    • 0029347203 scopus 로고
    • U1 snRNA variants coexist in Bombyx mori cells
    • Gao, J.P., Herrera, R.J., 1995. U1 snRNA variants coexist in Bombyx mori cells. Insect. Mol. Biol. 4, 193-202.
    • (1995) Insect. Mol. Biol. , vol.4 , pp. 193-202
    • Gao, J.P.1    Herrera, R.J.2
  • 12
    • 0028916033 scopus 로고
    • The U6 snRNA-encoding gene of the monogenetic trypanosomatid Leptomonas collosoma
    • Goldring, A., Michaeli, S., 1995. The U6 snRNA-encoding gene of the monogenetic trypanosomatid Leptomonas collosoma. Gene 156. 139-144.
    • (1995) Gene , vol.156 , pp. 139-144
    • Goldring, A.1    Michaeli, S.2
  • 14
    • 0025137186 scopus 로고
    • U1-specific protein C needed for efficient complex formation of U1 snRNP with a 5′ splice site
    • Heinrichs, V., Bach, M., Winkelmann, G., Luhrmann, R., 1990. U1-specific protein C needed for efficient complex formation of U1 snRNP with a 5′ splice site. Science 247, 69-72.
    • (1990) Science , vol.247 , pp. 69-72
    • Heinrichs, V.1    Bach, M.2    Winkelmann, G.3    Luhrmann, R.4
  • 16
    • 0028289188 scopus 로고
    • Protein-protein interactions and 5′ splice site recognition in mammalian mRNA precursors
    • Kohtz, J.D., Jamison, S.F., Will, C.L., Zuo, P., Luhrmann, R., Garcia-Blanco, M.A., Manley, J.L., 1994. Protein-protein interactions and 5′ splice site recognition in mammalian mRNA precursors. Nature 368, 4614-4623.
    • (1994) Nature , vol.368 , pp. 4614-4623
    • Kohtz, J.D.1    Jamison, S.F.2    Will, C.L.3    Zuo, P.4    Luhrmann, R.5    Garcia-Blanco, M.A.6    Manley, J.L.7
  • 17
    • 0027668951 scopus 로고
    • The spliceosome
    • Lamond, A.I., 1993. The spliceosome. Bioessays 15, 595-603.
    • (1993) Bioessays , vol.15 , pp. 595-603
    • Lamond, A.I.1
  • 18
    • 0016651442 scopus 로고
    • The length of the fibroin gene in the Bombyx mori genome
    • Lizardi, P.M., Brown, D.D., 1975. The length of the fibroin gene in the Bombyx mori genome. Cell 4, 207-215.
    • (1975) Cell , vol.4 , pp. 207-215
    • Lizardi, P.M.1    Brown, D.D.2
  • 19
    • 0025604570 scopus 로고
    • Drosophila melanogaster genes for U1 snRNA variants and their expression during development
    • Lo, P.C., Mount, S.M., 1990. Drosophila melanogaster genes for U1 snRNA variants and their expression during development. Nucleic Acids Res. 18, 6971-6979.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6971-6979
    • Lo, P.C.1    Mount, S.M.2
  • 20
    • 0028018232 scopus 로고
    • Suppressor U1 snRNAs in Drosophila
    • Lo, P.C., Roy, D., Mount, S.M., 1994. Suppressor U1 snRNAs in Drosophila. Genetics 138 (2), 365-378.
    • (1994) Genetics , vol.138 , Issue.2 , pp. 365-378
    • Lo, P.C.1    Roy, D.2    Mount, S.M.3
  • 21
    • 0031840978 scopus 로고    scopus 로고
    • Regulation of alternative polyadenylation by U1 snRNPs and SRp20
    • Lou, H., Neugebauer, K.M., Gagel, R.F., Berget, S.M., 1998. Regulation of alternative polyadenylation by U1 snRNPs and SRp20. Mol. Cell. Biol. 18, 4977-4985.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 4977-4985
    • Lou, H.1    Neugebauer, K.M.2    Gagel, R.F.3    Berget, S.M.4
  • 22
    • 0021826788 scopus 로고
    • Differential control of U1 small nuclear RNA expression during mouse development
    • Lund, E., Kahan, B., Dahlberg, J.E., 1985. Differential control of U1 small nuclear RNA expression during mouse development. Science 229, 1271-1274.
    • (1985) Science , vol.229 , pp. 1271-1274
    • Lund, E.1    Kahan, B.2    Dahlberg, J.E.3
  • 23
    • 0026486883 scopus 로고
    • A novel base-pairing interaction between U2 and U6 snRNAs suggests a mechanism for the catalytic activation of the spliceosome
    • Madhani, H.D., Guthrie, C., 1992. A novel base-pairing interaction between U2 and U6 snRNAs suggests a mechanism for the catalytic activation of the spliceosome. Cell 71, 803-817.
    • (1992) Cell , vol.71 , pp. 803-817
    • Madhani, H.D.1    Guthrie, C.2
  • 24
    • 0030597341 scopus 로고    scopus 로고
    • Identification and analysis of the u6 small nuclear RNA gene from Entamoeba histolytica
    • Miranda, R., Salgado, L.M., Sanchez-Lopez, R., Alagon, A., Lizardi, P.M., 1996. Identification and analysis of the u6 small nuclear RNA gene from Entamoeba histolytica. Gene 180. 37-42.
    • (1996) Gene , vol.180 , pp. 37-42
    • Miranda, R.1    Salgado, L.M.2    Sanchez-Lopez, R.3    Alagon, A.4    Lizardi, P.M.5
  • 25
    • 0019878355 scopus 로고
    • Sequence of U1 RNA from Drosophila melanogaster: Implications for U1 secondary structure and possible involvement in splicing
    • Mount, S.M., Steitz, J.A., 1981. Sequence of U1 RNA from Drosophila melanogaster: Implications for U1 secondary structure and possible involvement in splicing. Nucleic Acids Res. 9 (23), 6351-6368.
    • (1981) Nucleic Acids Res. , vol.9 , Issue.23 , pp. 6351-6368
    • Mount, S.M.1    Steitz, J.A.2
  • 26
    • 0030203863 scopus 로고    scopus 로고
    • TreeView, an application to display phylogenetic trees on personal computers
    • Page, R.D., 1996. TreeView, an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12, 357-358.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.1
  • 27
    • 0028893777 scopus 로고
    • Concerted evolution of the tandem array encoding primate U2 snRNA occurs in situ, without changing the cytological context of the RNU2 locus
    • Pavelitz, T., Rusche, L., Matera, A.G., Scharf, J.M., Weiner, A.M., 1995. Concerted evolution of the tandem array encoding primate U2 snRNA occurs in situ, without changing the cytological context of the RNU2 locus. Embo. J. 14, 169-177.
    • (1995) Embo. J. , vol.14 , pp. 169-177
    • Pavelitz, T.1    Rusche, L.2    Matera, A.G.3    Scharf, J.M.4    Weiner, A.M.5
  • 28
    • 0023375195 scopus 로고
    • The neighbor-joining method, a new method for reconstructing phylogenetic trees
    • Saitou, N., Nei, M., 1987. The neighbor-joining method, a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 30
    • 0032489021 scopus 로고    scopus 로고
    • Mechanical devices of the spliceosome, motors, clocks, springs, and things
    • Staley, J.P., Guthrie, C., 1998. Mechanical devices of the spliceosome, motors, clocks, springs, and things. Cell 92, 315-326.
    • (1998) Cell , vol.92 , pp. 315-326
    • Staley, J.P.1    Guthrie, C.2
  • 31
    • 0015505425 scopus 로고
    • Isolation and identification of the messenger RNA for silk fibroin from Bombyx mori
    • Suzuki, Y., Brown, D.D., 1972. Isolation and identification of the messenger RNA for silk fibroin from Bombyx mori. J. Mol. Biol. 63, 409-429.
    • (1972) J. Mol. Biol. , vol.63 , pp. 409-429
    • Suzuki, Y.1    Brown, D.D.2
  • 32
    • 0027968068 scopus 로고
    • CLUSTAL W, improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G., Gibson, T.J., 1994. CLUSTAL W, improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 33
    • 0025026156 scopus 로고
    • Conserved sequences in the U2 snRNA-encoding genes of Kinetoplastida do not include the putative branchpoint recognition region
    • Tschudi, C., Williams, S.P., Ullu, E., 1990. Conserved sequences in the U2 snRNA-encoding genes of Kinetoplastida do not include the putative branchpoint recognition region. Gene 91, 71-77.
    • (1990) Gene , vol.91 , pp. 71-77
    • Tschudi, C.1    Williams, S.P.2    Ullu, E.3
  • 34
    • 0021249481 scopus 로고
    • Natural fibroin genes purified without using cloning procedures from fibroin-producing and -nonproducing tissues reveal indistinguishable structure and function
    • Tsujimoto, Y., Suzuki, Y., 1984. Natural fibroin genes purified without using cloning procedures from fibroin-producing and -nonproducing tissues reveal indistinguishable structure and function. Proc. Natl Acad. Sci. USA 81, 1644-1648.
    • (1984) Proc. Natl Acad. Sci. USA , vol.81 , pp. 1644-1648
    • Tsujimoto, Y.1    Suzuki, Y.2
  • 35
    • 0028428906 scopus 로고
    • A family of U1 pseudogenes in Bombyx mori may be derived from an ancestral pseudogene
    • Vega, L.R., Amengual, J., Herrera, R.J., 1994. A family of U1 pseudogenes in Bombyx mori may be derived from an ancestral pseudogene. Insect Mol. Biol. 3, 117-122.
    • (1994) Insect Mol. Biol. , vol.3 , pp. 117-122
    • Vega, L.R.1    Amengual, J.2    Herrera, R.J.3
  • 37
    • 0343907206 scopus 로고    scopus 로고
    • Protein functions in pre-mRNA splicing
    • Will, C.L., Luhrmann, R., 1997. Protein functions in pre-mRNA splicing. Curr. Opin. Cell Biol. 9, 320-328.
    • (1997) Curr. Opin. Cell Biol. , vol.9 , pp. 320-328
    • Will, C.L.1    Luhrmann, R.2
  • 38
    • 0000996356 scopus 로고    scopus 로고
    • The Growing World of Small Nuclear Ribonucleoproteins
    • Gesteland, R.F., Cech, T., Atkins, J.F. (Eds.). Cold Spring Harbor Press, Cold Spring Harbor, NY
    • Yu, Y.-T., Schart, E.C., Smith, C.M., Steitz, J.A., 1999. The Growing World of Small Nuclear Ribonucleoproteins. In: Gesteland, R.F., Cech, T., Atkins, J.F. (Eds.), The RNA World, the Nature of Modern RNA Suggests a Prebiotic RNA. Cold Spring Harbor Press, Cold Spring Harbor, NY, pp. 487-524.
    • (1999) The RNA World, the Nature of Modern RNA Suggests a Prebiotic RNA , pp. 487-524
    • Yu, Y.-T.1    Schart, E.C.2    Smith, C.M.3    Steitz, J.A.4
  • 39
    • 0022550119 scopus 로고
    • A compensatory base change in U1 snRNA suppresses a 5′ splice site mutation
    • Zhuang, Y., Weiner A.M., 1986. A compensatory base change in U1 snRNA suppresses a 5′ splice site mutation. Cell 46, 827-835.
    • (1986) Cell , vol.46 , pp. 827-835
    • Zhuang, Y.1    Weiner, A.M.2
  • 40
    • 1842277832 scopus 로고    scopus 로고
    • The uRNA database
    • Zwieb, C., 1996. The uRNA database. Nucleic Acids Res. 24, 76-79.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 76-79
    • Zwieb, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.