Renewable microcolumns for automated DNA purification and flow-through amplification: From sediment samples through polymerase chain reaction

Analytica Chimica Acta

Volumn 469, Issue 1, 2002, Pages 129-140

  Bruckner Lea, Cynthia J ^a   Tsukuda, Toyoko ^b   Dockendorff, Brian ^a   Follansbee, James C ^a   Kingsley, Mark T ^b   Ocampo, Cathy ^b   Stults, Jennie R ^b   Chandler, Darrell P ^a,b  

^a PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

^b PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

DNA; Microbead; Nucleic acid; PCR; Renewable microcolumn; Sediment; Sequential injection

Indexed keywords

GENOMIC DNA; PLASMID DNA;

ANALYTIC METHOD; ARTICLE; AUTOMATION; BACTERIUM CONTAMINATION; DEVICE; DNA EXTRACTION; DNA PURIFICATION; GENE AMPLIFICATION; GENE TARGETING; NUCLEIC ACID ANALYSIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEDIMENT;

GEOBACTER;

EID: 0037179941     PISSN: 00032670     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0003-2670(01)01438-6     Document Type: Article

References (37)

1. Sharma V.K., Dean-Nystrom E.A., Casey T.A. Mol. Cell. Probes. 13:1999;291.
2. Oberst R.D., Hays M.P., Bohra L.K., Phebus R.K., Yamashiro C.T., Paszko-Kolva C., Flood S.J.A., Sargeant J.M., Gillespie J.R. Appl. Environ. Microbiol. 64:1998;3389.
3. Maudru T., Peden K.W.C. Biotechniques. 25:1998;972.
4. Martell M., Gomex J., Esteban J.I., Sauleda S., Quer J., Cabot B., Esteban R., Guardia J. J. Clin. Microbiol. 37:1999;327.
5. Desjardin L.E., Chen Y., Perkins M.D., Teixeira L., Cave M.D., Eisenach K.D. J. Clin. Microbiol. 36:1998;1964.
6. Holland P.M., Abramson R.D., Watson R., Gelfand D.H. Proc. Natl. Acad. Sci. U.S.A. 88:1991;7276.
7. Kalinina O., Lebedeva I., Brown J., Silver J. Nucl. Acids Res. 25:1997;1999.
8. Belgrader P., Bennett W., Hadley D., Long G., Mariella R. Jr., Milanovich F., Nasarabadi S., Nelson W., Richards J., Stratton P. Clin. Chem. 44:1998;2191.
9. Schmalzing D., Koutny L., Adourian A., Belgrader P., Matsudaira P., Ehrlich D. Proc. Natl. Acad. Sci. U.S.A. 94:1997;10273.
10. Nasarabadi S., Milanovich F., Richards J., Belgrader P. Biotechniques. 27:1999;1116.
11. Northrup M.A., Benett B., Hadley D., Landre P., Lehew S., Richards J., Stratton P. Anal. Chem. 70:1998;918.
12. Woo T.H., Patel B.K., Smythe L.D., Norris M.A., Symonds M.L., Dohnt M.F. Anal. Biochem. 256:1998;132.
13. Swerdlow H., Jones B.J., Wittwer C.T. Anal. Chem. 69:1997;848.
14. Wittwer C.T., Fillmore G.C., Hillyard D.R. Nucl. Acids Res. 17:1989;4353.
15. Friedman N.A., Meldrum D.R. Anal. Chem. 70:1998;2997.
16. Wilson I.G. Appl. Environ. Microbiol. 63:1997;3741.
17. Jacobsen C.S., Rasmussen O.F. Appl. Environ. Microbiol. 58:1992;2458.
18. Ogram A., Sun W., Brockman F.J., Fredrickson J.K. Appl. Environ. Microbiol. 61:1995;763.
19. Steffan R.J., Goksoyr J., Bej A.K., Atlas R.M. Appl. Environ. Microbiol. 54:1988;2908.
20. Volossiouk T., Robb E.J., Nazar R.N. Appl. Environ. Microbiol. 61:1995;3972.
21. Ekendahl S., Arlinger J., Ståhl F., Pedersen K. Microbiology. 140:1994;1575.
22. Hovanec T.A., DeLong E.F. Appl. Environ. Microbiol. 62:1996;2888.
23. Noble R.T., Fuhrman J.A. Appl. Environ. Microbiol. 63:1997;77.
24. Chandler D.P., Holman D.A., Brockman F.J., Grate J.W., Bruckner-Lea C.J. Trends Anal. Chem. 19:2000;314.
25. Ruzicka J. Anal. Chim. Acta. 308:1995;14.
26. Ruzicka J., Scampavia L. Anal. Chem. 71:1999;257A.
27. Bruckner-Lea C.J., Holman D.A., Schuck B.L., Brockman F.J., Chandler D.P. SPIE Proc. 3544:1999;63.
28. Bruckner-Lea C.J., Anheier N.C. Jr., Holman D., Tsukuda T., Kingsley M.T., Brockman F.J., Price J.M., Grate J.W., Chandler D.P. SPIE Proc. 4200:2000;74.
29. Bruckner-Lea C.J., Stottlemyre M.S., Grate J.W., Holman D.A., Brockman F.J., Chandler D.P. Anal. Chem. 72:2000;4135.
30. Chandler D.P., Schuck B.L., Brockman F.J., Bruckner-Lea C.J. Talanta. 49:1999;969.
31. Weisburg W.G., Barns S.M., Pelletier D.A., Lane D.J. J. Bacteriol. 173:1991;697.
32. F.M. Ausubel, R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith, K. Struhl, Current Protocols in Molecular Biology, Wiley, New York, 1995.
33. J.R. Stults, O. Snoeyenbos-West, B. Methe, D.R. Lovley, D.P. Chandler, Appl. Environ. Microbiol. 67 (2001) 2781.
34. Chandler D.P., Stults J.R., Anderson K.K., Cebula S., Schuck B.L., Brockman F.J. Anal. Biochem. 283:2000;241.
35. Tan H., Yeung E.S. Anal. Chem. 70:1998;4044.
36. Zhang N., Tan H., Yeung E.S. Anal. Chem. 71:1999;1138.
37. Thornton C.G., Hartley J.L., Rashtchian A. Biotechniques. 13:1992;180.