Guanine binding site of the Nicotiana glutinosa ribonuclease NW revealed by X-ray crystallography

Biochemistry

Volumn 41, Issue 51, 2002, Pages 15195-15202

  Kawano, Shin ^a   Kakuta, Yoshimitsu ^a   Kimura, Makoto ^a  

^a KYUSHU UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING SITES;

COLUMN CHROMATOGRAPHY; CRYSTAL STRUCTURE; DNA; X RAY CRYSTALLOGRAPHY; YEAST;

BIOCHEMISTRY;

COMPLEMENTARY DNA; GUANINE; GUANOSINE PHOSPHATE; RECOMBINANT ENZYME; RIBONUCLEASE;

ARTICLE; BINDING SITE; COLUMN CHROMATOGRAPHY; CRYSTAL STRUCTURE; ENZYME ANALYSIS; ENZYME PURIFICATION; HYDROGEN BOND; MOLECULAR RECOGNITION; MOLECULAR STABILITY; NICOTIANA GLUTINOSA; NONHUMAN; PICHIA PASTORIS; PLANT; PLANT LEAF; PRIORITY JOURNAL; TOMATO; X RAY CRYSTALLOGRAPHY;

5'-GUANYLIC ACID; AMINO ACID SEQUENCE; BINDING SITES; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; ENDORIBONUCLEASES; GUANINE; HYDROGEN BONDING; MOLECULAR SEQUENCE DATA; PICHIA; PLANT DISEASES; PLANT PROTEINS; PROTEIN STRUCTURE, SECONDARY; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; TOBACCO;

CUCURBITA; LYCOPERSICON ESCULENTUM; MOMORDICA CHARANTIA; NICOTIANA; NICOTIANA GLUTINOSA; PICHIA; PICHIA PASTORIS; VECTORS;

EID: 0037168501     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi026247l     Document Type: Article

References (39)

1. Steyaert, J. (1997) Eur. J. Biochem. 247, 1-11.
2. delCardayre, S. B., and Raines, R. T. (1994) Biochemistry 33, 6031-6037.
3. Irie, M. (1999) Pharmacol. Ther. 81, 77-89.
4. Sato, K., and Egami, F. (1957) J. Biochem. 44, 753-767.
5. Horiuchi, H., Yanai, K., Takagi, M., Yano, K., Wakabayashi, E., Sanda, A., Mine, S., Ohgi, K., and Irie, M. (1988) J. Biochem. 103, 408-418.
6. Tomoyeda, M., Eto, Y., and Yoshino, T. (1969) Arch. Biochem. Biophys, 131, 191-202.
7. Ohgi, K., Horiuchi, H., Iwama, M., Watanabe, H., Takagi, M., and Irie, M. (1992) J. Biochem. 112, 132-138.
8. Irie, M., Ohgi, K., Iwama, M., Koizumi, M., Sasayama, E., Harada, K., Yano, Y., Udogawa, J., and Kawasaki, M. (1997) J. Biochem. 121, 849-853.
9. Kurihara, H., Nonaka, T., Mitsui, Y., Ohgi, K., Irie, M., and Nakamura, K. (1996) J. Mol. Biol. 255, 310-320.
10. rd International Meeting on Ribonuclease, Chemistry, Biology, Biotechnology, Capri, p 5.
11. Green. P. J. (1994) Annu. Rev. Plant. Physiol. Plant Mol. Biol. 45. 421-445.
12. Abel, S., Krauss, G.-J., and Glund, K. (1989) Biochim. Biophys. Acta 998, 145-150.
13. Nurnberger, T., Abel, S., Jost, W., and Glund, K. (1990) Plant Physiol. 92, 970-976.
14. Irie, M., Watanabe, H., Ohgi, K., Minami, Y., Yamada, H., and Funatsu, G. (1993) Biosci. Biotechnol. Biochem. 57, 497-498.
15. Suzuki, A., Yao, M., Tanaka, I., Numata, T., Kikukawa, S., Yamasaki, N., and Kimura, M. (2000) Biochem. Biophys. Res. Commun. 275, 572-576.
16. Numata, T., Suzuki, A., Yao, M., Tanaka, I., and Kimura, M. (2001) Biochemistry, 40, 524-530.
17. Kariu, T., Sano, K., Shimokawa, H., Itoh, R., Yamasaki, N., and Kimura, M. (1998) Biosci. Biotechnol. 62, 1144-1151.
18. Quaas, R., Landt, O., Grunert, H.-P., Beineke, M., and Hahn, U. (1989) Nucleic Acids Res. 17, 3318.
19. Laemmli, U.K. (1970) Nature 227, 680-685.
20. Pflugrath, J. W. (1999) Acta Crystallogr., Sect. D 55, 1718-1725.
21. Brunger, A. T., Adams, P. D., Clore, G. M., Delano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pann, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr., Sect. D 54, 905-921.
22. Jones, T. A., Zou, J., Cowan, S., and Kjeldgaard, M. (1991) Acta Crystallogr., Sect. A 47, 110-119.
23. Lascowski, R. A., McArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 282-291.
24. rd Ed.) 4, 647-806.
25. Tanaka, N., Arai, J., Inokuchi, N., Koyama, T., Ohgi, K., Irie, M., and Nakamura, K. (2000) J. Mol. Biol. 298, 859-873.
26. Engh, R. A., and Huber, R. (1991) Acta Crystallogr., Sect. A 47, 392-400.
27. Kabsch, W., and Sander, C. (1983) Biopolymers 22, 2577-2637.
28. Hartley, R. W. (1988) J. Mol. Biol. 202, 913-915.
29. Nambiar, K. P., Stackhouse, J., Presnell, S. R., and Benner, S. A. (1987) Eur. J. Biochem. 163, 67-71.
30. Ikehara, M., Ohtsuka, E., Tokunaga, T., Nishikawa, S., Uesugi, S., Tanaka, T., Aoyama, Y., Kikyodani, S., Fujimoto, K., Yanase, K., Fuchimura, K., and Morioka, H. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 4695-4699.
31. Hino, M., Kawano, S., and Kimura, M. (2002) Biosci. Biotechnol. Biochem. 66, 910-912.
32. Numata, T., Kashiba, T., Hino, M., Funatsu, G., Ishiguro, M., Yamasaki, N., and Kimura, M. (2000) Biosci. Biotechnol. Biochem. 64, 603-605.
33. Numata, T., and Kimura, M. (2001) J. Biochem. 130, 621-626.
34. Chatani, E., Tanimizu, N., Ueno, H., and Hayashi, R. (2000) Biosci. Biotechnol. Biochem. 64, 2437-2444.
35. Burd, C. G., and Dreyfuss, G. (1994) Science 265, 615-621.
36. Loverix, S., Doumen, J., and Steyaert, J. (1997) J. Biol. Chem. 272, 9653-9639.
37. Ohgi, K., Horiuchi, H., Watanabe H., Takagi, M., Yano, K., and Irie, M. (1991) J. Biochem. 109, 776-785.
38. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.
39. Ide, H., Kimura, M., Arai, M., and Funatsu, G. (1991) FEBS Lett. 284, 161-164.