메뉴 건너뛰기




Volumn 3, Issue 9, 2002, Pages

PRESTA: associating promoter sequences with information on gene expression

Author keywords

Additional Data File; Matching ESTs; Mouse Promoter; Promoter Sequence; Transcription Start Site

Indexed keywords

ALGORITHM; ARTICLE; EUKARYOTE; EXPRESSED SEQUENCE TAG; GENE EXPRESSION; HUMAN; MOUSE; NONHUMAN; PROMOTER REGION; SEQUENCE DATABASE; TRANSCRIPTION INITIATION SITE; ANIMAL; BIOLOGY; COMPARATIVE STUDY; COMPUTER PROGRAM; CONFORMATION; GENE EXPRESSION PROFILING; GENETICS; INFORMATION RETRIEVAL; METHODOLOGY; NUCLEIC ACID DATABASE; ONLINE SYSTEM;

EID: 0037151572     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2002-3-9-research0050     Document Type: Article
Times cited : (3)

References (35)
  • 2
    • 0036089483 scopus 로고    scopus 로고
    • The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data
    • PID: 11752326, COI: 1:CAS:528:DC%2BD38Xht12rs7g%3D
    • Praz V, Périer RC, Bonnard C, Bucher P: The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data. Nucleic Acids Res. 2002, 30: 322-324. 10.1093/nar/30.1.322. DOI: 10.1093/nar/30.1.322
    • (2002) Nucleic Acids Res , vol.30 , pp. 322-324
    • Praz, V.1    Périer, R.C.2    Bonnard, C.3    Bucher, P.4
  • 6
    • 0027249595 scopus 로고
    • dbEST-database for "expressed sequence tags"
    • PID: 8401577, COI: 1:CAS:528:DyaK3sXltlaktL4%3D
    • Boguski MS, Lowe TM, Tolstoshev CM: dbEST-database for "expressed sequence tags". Nat Genet. 1993, 4: 332-333. DOI: 10.1038/ng0893-332
    • (1993) Nat Genet , vol.4 , pp. 332-333
    • Boguski, M.S.1    Lowe, T.M.2    Tolstoshev, C.M.3
  • 7
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • PID: 2231712, COI: 1:CAS:528:DyaK3MXitVGmsA%3D%3D
    • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol. 1990, 215: 403-410. 10.1006/jmbi.1990.9999. DOI: 10.1016/S0022-2836(05)80360-2
    • (1990) J Mol Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2    Miller, W.3    Myers, E.W.4    Lipman, D.J.5
  • 8
    • 85182657122 scopus 로고    scopus 로고
    • PRESTA database. [http://baloun.entu.cas.cz/presta]
    • PRESTA Database
  • 9
    • 0035162594 scopus 로고    scopus 로고
    • RefSeq and LocusLink: NCBI gene-centered resources
    • PID: 11125071, COI: 1:CAS:528:DC%2BD3MXjtlWnu74%3D
    • Pruitt KD, Maglott DR: RefSeq and LocusLink: NCBI gene-centered resources. Nucleic Acids Res. 2001, 29: 137-140. 10.1093/nar/29.1.137. DOI: 10.1093/nar/29.1.137
    • (2001) Nucleic Acids Res , vol.29 , pp. 137-140
    • Pruitt, K.D.1    Maglott, D.R.2
  • 10
    • 0030863002 scopus 로고    scopus 로고
    • Eukaryotic promoter recognition
    • PID: 9314492, COI: 1:CAS:528:DyaK2sXmtVSlsLk%3D
    • Fickett JW, Hatzigeorgiou AG: Eukaryotic promoter recognition. Genome Res. 1997, 7: 861-878.
    • (1997) Genome Res , vol.7 , pp. 861-878
    • Fickett, J.W.1    Hatzigeorgiou, A.G.2
  • 11
    • 0033563512 scopus 로고    scopus 로고
    • The biology of eukaryotic promoter prediction - a review
    • PID: 10404615, COI: 1:CAS:528:DyaK1MXktFKmtrg%3D
    • Pedersen AG, Baldi P, Chauvin Y, Brunak S: The biology of eukaryotic promoter prediction - a review. Comput Chem. 1999, 23: 191-207. 10.1016/S0097-8485(99)00015-7. DOI: 10.1016/S0097-8485(99)00015-7
    • (1999) Comput Chem , vol.23 , pp. 191-207
    • Pedersen, A.G.1    Baldi, P.2    Chauvin, Y.3    Brunak, S.4
  • 12
    • 0035236049 scopus 로고    scopus 로고
    • Promoter prediction in the human genome
    • PID: 11472997
    • Hannenhalli S, Levy S: Promoter prediction in the human genome. Bioinformatics. 2001, 17 (Suppl 1): S90-S96. DOI: 10.1093/bioinformatics/17.suppl_1.S90
    • (2001) Bioinformatics , vol.17 , pp. S90-S96
    • Hannenhalli, S.1    Levy, S.2
  • 13
    • 0035735265 scopus 로고    scopus 로고
    • Computational identification of promoters and first exons in the human genome
    • PID: 11726928, COI: 1:CAS:528:DC%2BD3MXovFartL0%3D
    • Davuluri RV, Grosse I, Zhang MQ: Computational identification of promoters and first exons in the human genome. Nat Genet. 2001, 29: 412-417. 10.1038/ng780. DOI: 10.1038/ng780
    • (2001) Nat Genet , vol.29 , pp. 412-417
    • Davuluri, R.V.1    Grosse, I.2    Zhang, M.Q.3
  • 14
    • 0034737325 scopus 로고    scopus 로고
    • Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach
    • PID: 10731414, COI: 1:CAS:528:DC%2BD3cXhvFWnsLw%3D
    • Scherf M, Klingenhoff A, Werner T: Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach. J Mol Biol. 2000, 297: 599-606. 10.1006/jmbi.2000.3589. DOI: 10.1006/jmbi.2000.3589
    • (2000) J Mol Biol , vol.297 , pp. 599-606
    • Scherf, M.1    Klingenhoff, A.2    Werner, T.3
  • 15
    • 0036123111 scopus 로고    scopus 로고
    • Computational detection and location of transcription start sites in mammalian genomic DNA
    • PID: 11875034, COI: 1:CAS:528:DC%2BD38XitFSltLY%3D
    • Down TA, Tim JP, Hubbard TJP: Computational detection and location of transcription start sites in mammalian genomic DNA. Genome Res. 2002, 12: 458-461. 10.1101/gr.216102. DOI: 10.1101/gr.216102
    • (2002) Genome Res , vol.12 , pp. 458-461
    • Down, T.A.1    Tim, J.P.2    Hubbard, T.J.P.3
  • 16
    • 0036124446 scopus 로고    scopus 로고
    • Consensus promoter identification in the human genome utilizing expressed gene markers and gene modeling
    • PID: 11875035, COI: 1:CAS:528:DC%2BD38XitFSltLc%3D
    • Liu R, States DJ: Consensus promoter identification in the human genome utilizing expressed gene markers and gene modeling. Genome Res. 2002, 12: 462-429. 10.1101/gr.198002. DOI: 10.1101/gr.198002
    • (2002) Genome Res , vol.12 , pp. 429-462
    • Liu, R.1    States, D.J.2
  • 21
    • 0028176627 scopus 로고
    • Glucose-6-phosphate dehydrogenase: a "housekeeping" enzyme subject to tissue-specific regulation by hormones, nutrients, and oxidant stress
    • PID: 8119488, COI: 1:CAS:528:DyaK2cXitlyktr4%3D
    • Kletzien RF, Harris PK, Foellmi LA: Glucose-6-phosphate dehydrogenase: a "housekeeping" enzyme subject to tissue-specific regulation by hormones, nutrients, and oxidant stress. FASEB J. 1994, 8: 174-181.
    • (1994) FASEB J , vol.8 , pp. 174-181
    • Kletzien, R.F.1    Harris, P.K.2    Foellmi, L.A.3
  • 22
    • 0033167908 scopus 로고    scopus 로고
    • Nucleotide sequence databases: a gold mine for biologists
    • PID: 10390617, COI: 1:CAS:528:DyaK1MXkslKls7o%3D
    • Pandey A, Lewitter F: Nucleotide sequence databases: a gold mine for biologists. Trends Biochem Sci. 1999, 24: 276-280. 10.1016/S0968-0004(99)01400-0. DOI: 10.1016/S0968-0004(99)01400-0
    • (1999) Trends Biochem Sci , vol.24 , pp. 276-280
    • Pandey, A.1    Lewitter, F.2
  • 23
    • 0032742129 scopus 로고    scopus 로고
    • Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression
    • PID: 10523523, COI: 1:CAS:528:DyaK1MXmvFWksbs%3D
    • Ewing RM, Kahla AB, Poirot O, Lopez F, Audic S, Claverie JM: Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression. Genome Res. 1999, 9: 950-959. 10.1101/gr.9.10.950. DOI: 10.1101/gr.9.10.950
    • (1999) Genome Res , vol.9 , pp. 950-959
    • Ewing, R.M.1    Kahla, A.B.2    Poirot, O.3    Lopez, F.4    Audic, S.5    Claverie, J.M.6
  • 24
    • 0034666168 scopus 로고    scopus 로고
    • An optimized protocol for analysis of EST sequences
    • PID: 10982889, COI: 1:STN:280:DC%2BD3cvls1ymtw%3D%3D
    • Liang F, Holt I, Pertea G, Karamycheva S, Salzberg SL, Quackenbush J: An optimized protocol for analysis of EST sequences. Nucleic Acids Res. 2000, 28: 3657-3665. 10.1093/nar/28.18.3657. DOI: 10.1093/nar/28.18.3657
    • (2000) Nucleic Acids Res , vol.28 , pp. 3657-3665
    • Liang, F.1    Holt, I.2    Pertea, G.3    Karamycheva, S.4    Salzberg, S.L.5    Quackenbush, J.6
  • 25
    • 0035150708 scopus 로고    scopus 로고
    • Gbuilder - an application for the visualization and integration of EST cluster data
    • PID: 11156627, COI: 1:CAS:528:DC%2BD3MXmsVCqsg%3D%3D
    • Muilu J, Rodriguez-Tome P, Robinson A: Gbuilder - an application for the visualization and integration of EST cluster data. Genome Res. 2001, 11: 179-184. 10.1101/gr.157501. DOI: 10.1101/gr.157501
    • (2001) Genome Res , vol.11 , pp. 179-184
    • Muilu, J.1    Rodriguez-Tome, P.2    Robinson, A.3
  • 26
    • 85182654047 scopus 로고    scopus 로고
    • CGAP Gene Finder. [http://cgap.nci.nih.gov/Genes/GeneFinder]
    • CGAP Gene Finder.
  • 28
    • 0036184680 scopus 로고    scopus 로고
    • The EBI SRS server - recent developments
    • PID: 11847095, COI: 1:CAS:528:DC%2BD38XitFentrY%3D
    • Zdobnov EM, Lopez R, Apweiler R, Etzold T: The EBI SRS server - recent developments. Bioinformatics. 2002, 18: 368-373. 10.1093/bioinformatics/18.2.368. DOI: 10.1093/bioinformatics/18.2.368
    • (2002) Bioinformatics , vol.18 , pp. 368-373
    • Zdobnov, E.M.1    Lopez, R.2    Apweiler, R.3    Etzold, T.4
  • 29
    • 85182641172 scopus 로고    scopus 로고
    • SEQALN algorithm
    • SEQALN algorithm. [http://www-hto.usc.edu/software/seqaln/]
  • 32
    • 85182689077 scopus 로고    scopus 로고
    • ELSEA homepage. [http://www.entu.cas.cz/mach/elsea/elsea.html]
    • ELSEA Homepage
  • 33
    • 0035064831 scopus 로고    scopus 로고
    • Expression of transferrin receptor and ferritin H-chain mRNA are associated with clinical and histopathological prognostic indicators in breast cancer
    • PID: 11299801, COI: 1:CAS:528:DC%2BD3MXjtVeru7Y%3D
    • Yang DC, Wang F, Elliott RL, Head JF: Expression of transferrin receptor and ferritin H-chain mRNA are associated with clinical and histopathological prognostic indicators in breast cancer. Anticancer Res. 2001, 21: 541-549.
    • (2001) Anticancer Res , vol.21 , pp. 541-549
    • Yang, D.C.1    Wang, F.2    Elliott, R.L.3    Head, J.F.4
  • 34
    • 0033616684 scopus 로고    scopus 로고
    • Choroid plexus epithelial expression of MDR1 P glycoprotein and multidrug resistance-associated protein contribute to the blood-cerebrospinal-fluid drug-permeability barrier
    • PID: 10097135, COI: 1:CAS:528:DyaK1MXjslChsLo%3D
    • Rao VV, Dahlheimer JL, Bardgett ME, Snyder AZ, Finch RA, Sartorelli AC, Piwnica-Worms D: Choroid plexus epithelial expression of MDR1 P glycoprotein and multidrug resistance-associated protein contribute to the blood-cerebrospinal-fluid drug-permeability barrier. Proc Natl Acad Sci USA. 1999, 96: 3900-3905. 10.1073/pnas.96.7.3900. DOI: 10.1073/pnas.96.7.3900
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 3900-3905
    • Rao, V.V.1    Dahlheimer, J.L.2    Bardgett, M.E.3    Snyder, A.Z.4    Finch, R.A.5    Sartorelli, A.C.6    Piwnica-Worms, D.7
  • 35
    • 0027202457 scopus 로고
    • Sequence elements required for transcriptional activity of the human myoglobin promoter in intact myocardium
    • PID: 8330378, COI: 1:CAS:528:DyaK3sXlslGhu7Y%3D
    • Bassel-Duby R, Grohe CM, Jessen ME, Parsons WJ, Richardson JA, Chao R, Grayson J, Ring WS, Williams RS: Sequence elements required for transcriptional activity of the human myoglobin promoter in intact myocardium. Circ Res. 1993, 73: 360-366. DOI: 10.1161/01.RES.73.2.360
    • (1993) Circ Res , vol.73 , pp. 360-366
    • Bassel-Duby, R.1    Grohe, C.M.2    Jessen, M.E.3    Parsons, W.J.4    Richardson, J.A.5    Chao, R.6    Grayson, J.7    Ring, W.S.8    Williams, R.S.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.