1H NMR studies of a 17-mer DNA duplex

Biochimica et Biophysica Acta - Gene Structure and Expression

Volumn 1574, Issue 1, 2002, Pages 93-99

  Liu, Weidong ^a   Vu, Hai M ^a   Kearns, David R ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

DNA; Nuclear magnetic resonance; Transcription factor 1

Indexed keywords

DOUBLE STRANDED DNA; DNA BINDING PROTEIN; TF1 DNA BINDING PROTEIN, BACTERIOPHAGE SPO1; TF1 DNA-BINDING PROTEIN, BACTERIOPHAGE SPO1; VIRUS PROTEIN;

ANALYTIC METHOD; ARTICLE; BASE PAIRING; DNA CONFORMATION; DNA HELIX; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUCLEAR OVERHAUSER EFFECT; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE; PROTON TRANSPORT; SPECTROSCOPY; STRUCTURE ANALYSIS; TWO DIMENSIONAL CORRELATED EFFECT; BINDING SITE; CHEMISTRY; METHODOLOGY;

BACILLUS SUBTILIS;

BASE PAIRING; BINDING SITES; DNA-BINDING PROTEINS; MAGNETIC RESONANCE SPECTROSCOPY; VIRAL PROTEINS;

EID: 0037138885     PISSN: 01674781     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-4781(01)00350-5     Document Type: Article

References (29)

1. Fluorescence studies of a single tyrosine in a type II DNA binding protein
2. Structure of the Bacillus subtilis phage SPO1-encoded type II DNA-binding protein TF1 in solution
3. Solution structure of a mutant of transcription factor 1: Implications for enhanced DNA binding
4. Making DNA do a U-turn: IHF and related proteins
5. Crystal structure of an IHF-DNA complex A protein-induced DNA U-turn
6. A template-selective inhibitor of in vitro transcription
7. The occurrence of a new pyrimidine base replacing thymine in a bacteriophage DNA: 5-Hydroxymethyl uracil
8. DNA binding by the bacteriophage SPO1-encoded type II DNA-binding protein, transcription factor 1. Site-specific binding requires 5-hydroxymethyluracil-containing DNA
9. H-1 NMR studies of the 5-(hydroxymethyl)-2′-deoxyuridine containing TF1 binding site
10. NMR-derived solution structure of a 17mer hydroxymethyluracil-containing DNA
11. Localized DNA flexibility contributes to target site selection by DNA-bending proteins
12. MLEV-17-based two-dimensional homonuclear magnetization transfer spectroscopy
13. Investigation of exchange processes by two-dimensional NMR spectroscopy
14. Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions
15. Gradient-enhanced spectroscopy
16. Studies of base pair kinetics by NMR measurement of proton exchange
17. Decreased imino proton exchange and base-pair opening in the IHF-DNA complex measured by NMR
18. Solution structure of phage-lambda 1/2-operator DNA by use of NMR, restrained molecular dynamics, and NOE based refinement
19. Two-, three-, and four-dimensional NMR methods for obtaining larger and more precise three-dimensional structures of proteins in solution
20. An abasic site in DNA. Solution conformation determined by proton NMR and molecular mechanics calculations
21. MPD and DNA bending in crystals and in solution
22. Analysis of H-1 chemical shifts in DNA: Assessment of the reliability of H-1 chemical shift calculations for use in structure refinement
23. Statistical analysis of DNA duplex structural features
24. DNA structure from A to Z
25. Improved nearest-neighbor parameters for predicting DNA duplex stability
26. Determining DNA global structure and DNA bending by application of NMR residual dipolar couplings
27. The use of NMR methods for conformational studies of nucleic acids