Phylogenetic characterization and biomass estimation of bacterial endosymbionts associated with invertebrates dwelling in chemosynthetic communities of hydrothermal vent and cold seep fields

Marine Ecology Progress Series

Volumn 245, Issue , 2002, Pages 61-67

  Yamamoto, Hiroyuki ^a   Fujikura, Katsunori ^b   Hiraishi, Akira ^c   Kato, Kenji ^d   Maki, Yonosuke ^e  

^a ST MARIANNA UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^b JAPAN AGENCY FOR MARINE EARTH SCIENCE AND TECHNOLOGY   (Japan)

^c TOYOHASHI UNIVERSITY OF TECHNOLOGY   (Japan)

^d SHIZUOKA UNIVERSITY   (Japan)

^e IWATE UNIVERSITY   (Japan)

Author keywords

16S rRNA; Chemosynthetic community; Mytilid mussel; Quinone; Symbiosis; Vesicomyid clam; Vestimentiferan tubeworm

Indexed keywords

BACTERIUM; BIOMASS; COLD SEEP; ENDOSYMBIONT; HYDROTHERMAL VENT COMMUNITY; PHYLOGENY; POPULATION DENSITY;

PACIFIC OCEAN;

BACTERIA (MICROORGANISMS); BATHYMODIOLUS; BATHYMODIOLUS SP.; BIVALVIA; CALYPTOGENA; CALYPTOGENA LAUBIERI; GAMMAPROTEOBACTERIA; INVERTEBRATA; LAMELLIBRACHIA SATSUMA; MYTILIDAE; PROKARYOTA; PROTEOBACTERIA; VESICOMYIDAE; VESTIMENTIFERA;

EID: 0037132720     PISSN: 01718630     EISSN: None     Source Type: Journal    
DOI: 10.3354/meps245061     Document Type: Article

References (28)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Di Meo CA, Wilbur AE, Holben WE, Feldman RA, Vrijenhoek RC, Cary SC (2000) Genetic variation among endosymbionts of widely distributed vestimentiferan tubeworms. Appl Environ Microbiol 66:651-658
3. Distel DL, DeLong EF, Waterbury JB (1991) Pylogenetic characterization and in situ localization of the bacterial symbiont of shipworms (Terdidae: bivalvia) by using 16S rRNA sequence analysis and oligodeoxynucleotide probe hybridization. Appl Environ Microbiol 57:2376-2382
4. Distel DL, Lee HK, Cavanaugh CM (1995) Intracellular coexistence of methano- and thioautotrophic bacteria in a hydrothermal vent mussel. Proc Natl Acad Sci USA 92:9598-9602
5. Feldman RA, Black MB, Cary CS, Lutz RA, Vrijenhoek RC (1997) Molecular phylogenetics of bacterial endosymbionts and their vestimentiferan hosts. Mol Mar Biol Biotechnol 6:268-277
6. Fujiwara Y, Kojima S, Mizota C, Maki Y, Fujikura K (2000a) Phylogenetic characterization of the endosymbionts of the deepest-living vesicomyid clam, Calyptogena fassajaponica, from the Japan Trench. VENUS 59:307-316
7. Fujiwara Y, Takai K, Uematsu K, Tsuchida S, Hunt JC, Hashimoto J (2000b) Phylogenetic characterization of endosymbionts in three hydrothermal vent mussels: influence on host distribution. Mar Ecol Prog Ser 208:147-155
8. Fujiwara Y, Kato C, Masui N, Fujikura K, Kojima S (2001) Dual symbiosis in the cold-seep thyasirid clam Maorithyas hadalis from the hadal zone in the Japan Trench, western Pacific. Mar Ecol Prog Ser 214:151-159
9. Hedrick DB, White DC (1986) Microbial respiratory quinones in the environment. I. A sensitive liquid chromatographic method. J Microbiol Methods 5:243-254
10. Hiraishi A (1999) Isoprenoid quinones as biomarkers of microbial populations in the environment. J Biosci Bioeng 88:449-460
11. Hiraishi A, Kato K (1999) Quinone profiles in lake sediments: implications for microbial diversity and community structures. J Gen Appl Microbiol 45:221-227
12. Hiraishi A, Ueda Y, Ishihara J, Mori T (1996) Comparative lipoquinone analysis of influent sewage and activated sludge by high-performance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 42:457-469
13. Hiraishi A, Ueda Y, Ishihara J (1998) Quinone profiling of bacterial communities in natural and synthetic sewage activated sludge for enhanced phosphate removal. Appl Environ Microbiol 64:992-998
14. Hiraishi A, Umezawa T, Yamamoto H, Kato K, Maki Y (1999) Changes in quinone profiles of hot spring microbial mats with a thermal gradient. Appl Environ Microbiol 65:198-205
15. Iwasaki M, Hiraishi A (1998) A new approach to numerical analyses of microbial quinone profiles in the environments. Microbes Environ 13:67-76
16. Kimura M (1981) Estimation of evolutionary distances between homologous nucleotid sequences. Proc Natl Acad Sci USA 78:454-458
17. Kojima S, Segawa R, Kobayashi T, Hashimoto T, Fujikura K, Hashimoto J, Ohta S (1995) Phylogenetic relationships among species of Calyptogena (Bibalvia: Vesicomyidae) collected around Japan revealed by nucleotide sequences of mitochondrial genes. Mar Biol 122:401-407
18. Kojima S, Ohta S, Miura T, Fujiwara Y, Hashimoto J (2000) Molecular phylogenetic study of chemoautosynthesis based communities in the Manus Basin. JAMASTEC J Deep Sea Res 16:7-13
19. Krueger DM, Cavanaugh CM (1997) Phylogenetic diversity of bacterial symbionts of Solemya hosts based on comparative sequence analysis of 16S rRNA genes. Appl Environ Microbiol 63:91-98
20. Maidak BL, Cole JR, Lilburn TG, Parker CT Jr and 6 others (2001) The RDP-II (Ribosomal Database Project). Nucleic Acids Res 29:173-174
21. Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358
22. Peek AS, Feldman RA, Lutz RA, Vrijenhoek RC (1998) Co-speciation of chemoautotrophic bacteria and deep sea clams. Proc Natl Acad Sci USA 95:9962-9966
23. Pond DW, Bell MV, Dixon DR, Fallick AE, Segonzac M, Sargent J (1998) Stable-carbon-isotope composition of fatty acids in hydrothermal vent mussels containing methanotrophic and thiotrophic bacterial endosymbionts. Appl Environ Microbiol 64:370-375
24. Pranal V, Fiala-Médioni A, Guezennec J (1996) Fatty acid characteristics in two symbiont-bearing mussels from deep-sea hydrothermal vents of the West Pacific. Mar Ecol Prog Ser 142:175-184
25. Pranal V, Fiala-Médioni A, Guezennec J (1997) Fatty acid characteristics in two symbiont-bearing mussels from deep-sea hydrothermal vents of the south western Pacific. J Mar Biol Assoc UK 77:473-492
26. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882
27. Van Dover CL (2000) The ecology of deep-sea hydrothermal vents. Princeton University Press, Princeton, NJ
28. Yamamoto H, Hiraishi A, Kato K, Chiura HX, Maki Y, Shimizu A (1998) Phylogenetic evidence for the existence of novel thermophilic bacteria in hot spring sulfur-turf microbial mats in Japan. Appl Environ Microbiol 64:1680-1687