An alanine-zipper structure determined by long range intermolecular interactions

Journal of Biological Chemistry

Volumn 277, Issue 50, 2002, Pages 48708-48713

  Liu, Jie ^a   Lu, Min ^a  

^a WEILL CORNELL MEDICAL COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONFORMATIONS; HYDROGEN BONDS; PROTEINS;

INTERMOLECULAR INTERACTION;

BIOCHEMISTRY;

ALANINE; PROTEIN; WATER;

ALPHA HELIX; AMINO ACID SEQUENCE; ARTICLE; HYDROGEN BOND; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN ENGINEERING; PROTEIN FOLDING; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; SOLID STATE;

EID: 0037073681     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M208773200     Document Type: Article

References (46)

1. Kim, P. S., and Baldwin, R. L. (1982) Annu. Rev. Biochem. 59, 631-660
2. Matthews, C. R. (1993) Annu. Rev. Biochem. 62, 653-683
3. Bryson, J. W., Betz, S. F., Lu, H. S., Suich, D. J., Zhou, H. X., O'Neil, K. T., and DeGrado, W. F. (1995) Science 270, 935-941
4. Munoz, V., and Serrano, L. (1996) Fold. Des. 1, R71-R77
5. Dobson, C. M., and Karplus, M. (1999) Curr. Opin. Struct. Biol. 9, 92-101
6. Fersht, A. R. (1999) Structure and Mechanism in Protein Science: A Guide to Enzyme Catalysis and Protein Folding, W. H. Freeman & Co., New York
7. Baldwin, R. L., and Rose, G. D. (1999) Trends Biochem. Sci. 24, 26-33
8. Plaxco, K. W., Simons, K. T., Ruczinski, I., and Baker, D. (2000) Biochemistry 39, 11177-11183
9. Rumbley, J., Hoang, L., Mayne, L., and Englander, S. W. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 105-112
10. Guerois, R., and Serrano, L. (2001) Curr. Opin. Struct. Biol. 11, 101-106
11. Bonneau, R., and Baker, D. (2001) Annu. Rev. Biophys. Biomol. Struct. 30, 173-189
12. Fersht, A. R., and Daggett, V. (2002) Cell 108, 573-582
13. Bryngelson, J. D., Onuchic, J. N., Socci, N. D., and Wolynes, P. G. (1995) Proteins Struct. Funct. Genet. 21, 167-195
14. Dill, K. A., and Chan, H. S. (1997) Nat. Struct. Biol. 4, 10-19
15. Pande, V. S., Grosberg, A., Tanaka, T., and Rokhsar, D. S. (1998) Curr. Opin. Struct. Biol. 8, 68-79
16. Onuchic, J. N., Nymeyer, H., Garcia, A. E., Chahine, J., and Socci, N. D. (2000) (2000) Adv. Protein Chem. 53, 87-152
17. Dinner, A. R., Sali, A., Smith, L. J., Dobson, C. M., and Karplus, M. (2000) Trends Biochem. Sci. 25, 331-339
18. Shu, W., Liu, J., Ji, H., and Lu, M. (2000) J. Mol. Biol. 299, 1101-1112
19. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
20. Liu, J., Cao, W., and Lu, M. (2002) J. Mol. Biol. 318, 877-888
21. Navaza, J. (1994) Acta Crystallogr. Sec. A 50, 157-163
22. Jones, T. A., Zou, J.-Y., and Cowan, S. W. (1991) Acta Crystallogr. Sec. A 47, 110-119
23. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sec. D 54, 905-921
24. Sheldrick, G. M., and Schneider, T. R. (1997) Methods Enzymol. 277, 319-343
25. Crick, F. H. C. (1953) Acta Crystallogr. 6, 689-697
26. Eisenberg, D., and McLachlan, A. D. (1986) Nature 319, 199-203
27. Shu, W., Ji, H., and Lu, M. (1999) Biochemistry 38, 5378-5385
28. Luo, P. Z., and Baldwin, R. L. (1997) Biochemistry 36, 8413-8421
29. Shu, W., Ji, H., and Lu, M. (2000) J. Biol. Chem. 275, 1839-1845
30. Hodges, R. S., Sodek, J., Smillie, L. B., and Jurasek, L. (1972) Cold Spring Harbor Symp. Quant. Biol. 37, 299-310
31. Parry, D. A. D. (1982) Biosci. Rep. 2, 1017-1024
32. Lupas, L., Van Dyke, M., and Stock, J. (1991) Science 252, 1162-1164
33. Kellis, J. T., Jr., Nyberg, K., Sali, D., and Fersht, A. R. (1988) Nature 333, 784-786
34. Dill, K. A. (1990) Biochemistry 29, 7133-7155
35. Matthews, B. W. (1995) Adv. Protein Chem. 46, 249-278
36. Harbury, P. B., Kim, P. S., and Alber, T. (1994) Nature 371, 80-83
37. Ramachandran, G. N., Ramakrishnan, C., and Sasisekharan, V. J. (1963) J. Mol. Biol. 7, 95-99
38. Gernert, K. M., Surles, M. C., Labean, T. H., Richardson, J. S., and Richardson, D. C. (1995) Protein Sci. 4, 2252-2260
39. Marqusee, S., Robbins, V. H., and Baldwin, R. L. (1989) Proc. Natl. Acad. Sci. U. S. A. 86, 5286-5290
40. Aurora, R., and Rose, G. D. (1998) Protein Sci. 7, 21-38
41. Dahiyat, B. I., and Mayo, S. L. (1997) Science 278, 82-87
42. Beasley, J. R., and Hecht, M. H. (1997) J. Biol. Chem. 272, 2031-2034
43. Harbury, P. B., Plecs, J. J., Tidor, B., Alber, T., and Kim, P. S. (1998) Science 282, 1462-1467
44. Ventura, S., Vega, M. C., Lacroix, E., Angrand, I., Spagnolo, L., and Serrano, L. (2002) Nat. Struct. Biol. 9, 485-493
45. Wright, P. E., and Dyson, H. J. (1999) J. Mol. Biol. 293, 321-331
46. Dobson, C. M. (2002) Philos. Trans. R. Soc. Lond-Biol. Sci. 356, 133-145