-
1
-
-
0028335140
-
Analysis of the sequence and gene products of the transfer region of the F sex factor
-
Frost, L. S., Ippen-Ihler, K. & Skurray, R. A. (1994). Analysis of the sequence and gene products of the transfer region of the F sex factor. Microbiol. Rev. 58, 162-210.
-
(1994)
Microbiol. Rev.
, vol.58
, pp. 162-210
-
-
Frost, L.S.1
Ippen-Ihler, K.2
Skurray, R.A.3
-
2
-
-
0000862044
-
Structure and function of the F factor and mechanisms of conjugation
-
(Neidhardt, F. C., ed.) 2nd edit., ASM Press, Washington, DC
-
Firth, N., Ippen-Ihler, K. & Skurray, R. A. (1996). Structure and function of the F factor and mechanisms of conjugation. In Escherichia coli and Salmonella (Neidhardt, F. C., ed.), 2nd edit., pp. 2377-2401, ASM Press, Washington, DC.
-
(1996)
Escherichia Coli and Salmonella
, pp. 2377-2401
-
-
Firth, N.1
Ippen-Ihler, K.2
Skurray, R.A.3
-
3
-
-
0028867005
-
Stepwise assembly of a relaxosome at the F plasmid origin of transfer
-
Howard, M. T., Nelson, W. C. & Matson, S. W. (1995). Stepwise assembly of a relaxosome at the F plasmid origin of transfer. J. Biol. Chem. 270, 28381-28386.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 28381-28386
-
-
Howard, M.T.1
Nelson, W.C.2
Matson, S.W.3
-
4
-
-
0027168243
-
Characterization of the Escherichia coli F factor traY gene product and its binding sites
-
Nelson, W. C., Morton, B. S., Lahue, E. E. & Matson, S. W. (1993). Characterization of the Escherichia coli F factor traY gene product and its binding sites. J. Bacteriol. 175, 2221-2228.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 2221-2228
-
-
Nelson, W.C.1
Morton, B.S.2
Lahue, E.E.3
Matson, S.W.4
-
5
-
-
0029824045
-
Construction of derivatives of the F plasmid pOX-tra715: Characterization of traY and traD mutants that can be complemented in trans
-
Maneewannakul, K., Kathir, P., Endley, S., Moore, D., Manchak, J., Frost, L. & Ippen-Ihler, K. (1996). Construction of derivatives of the F plasmid pOX-tra715: characterization of traY and traD mutants that can be complemented in trans. Mol. Microbiol. 22, 197-205.
-
(1996)
Mol. Microbiol.
, vol.22
, pp. 197-205
-
-
Maneewannakul, K.1
Kathir, P.2
Endley, S.3
Moore, D.4
Manchak, J.5
Frost, L.6
Ippen-Ihler, K.7
-
6
-
-
0029844674
-
Effect of traY amber mutations on F-plasmid traY promoter activity in vivo
-
Silverman, P. M. & Sholl, A. (1996). Effect of traY amber mutations on F-plasmid traY promoter activity in vivo. J. Bacteriol. 178, 5787-5789.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5787-5789
-
-
Silverman, P.M.1
Sholl, A.2
-
7
-
-
0025021309
-
TraY proteins of F and related episomes are members of the Arc and Mnt repressor family
-
Bowie, J. U. & Sauer, R. T. (1990). TraY proteins of F and related episomes are members of the Arc and Mnt repressor family. J. Mol. Biol. 211, 5-6.
-
(1990)
J. Mol. Biol.
, vol.211
, pp. 5-6
-
-
Bowie, J.U.1
Sauer, R.T.2
-
8
-
-
0033538514
-
Specific DNA recognition by F Factor TraY involves beta-sheet residues
-
Lum, P. L. & Schildbach, J. F. (1999). Specific DNA recognition by F Factor TraY involves beta-sheet residues. J. Biol. Chem. 274, 19644-19648.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 19644-19648
-
-
Lum, P.L.1
Schildbach, J.F.2
-
9
-
-
0001586362
-
Identifying determinants of folding and activity for a protein of unknown structure
-
Bowie, J. U. & Sauer, R. T. (1989). Identifying determinants of folding and activity for a protein of unknown structure. Proc. Natl Acad. Sci. USA, 86, 2152-2156.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 2152-2156
-
-
Bowie, J.U.1
Sauer, R.T.2
-
10
-
-
0025336625
-
Structure of Arc repressor in solution: Evidence for a family of beta-sheet DNA-binding proteins
-
Breg, J. N., van Opheusden, J. H., Burgering, M. J., Boelens, R. & Kaptein, R. (1990). Structure of Arc repressor in solution: evidence for a family of beta-sheet DNA-binding proteins. Nature, 346, 586-589.
-
(1990)
Nature
, vol.346
, pp. 586-589
-
-
Breg, J.N.1
Van Opheusden, J.H.2
Burgering, M.J.3
Boelens, R.4
Kaptein, R.5
-
11
-
-
0028609493
-
Solution structure of dimeric Mnt repressor (1-76)
-
Burgering, M. J., Boelens, R., Gilbert, D. E., Breg, J. N., Knight, K. L., Sauer, R. T. & Kaptein, R. (1994). Solution structure of dimeric Mnt repressor (1-76). Biochemistry, 33, 15036-15045.
-
(1994)
Biochemistry
, vol.33
, pp. 15036-15045
-
-
Burgering, M.J.1
Boelens, R.2
Gilbert, D.E.3
Breg, J.N.4
Knight, K.L.5
Sauer, R.T.6
Kaptein, R.7
-
12
-
-
0024462909
-
Three-dimensional crystal structures of Escherichia coli met repressor with and without corepressor
-
Rafferty, J. B., Somers, W. S., Saint-Girons, I. & Phillips, S. E. (1989). Three-dimensional crystal structures of Escherichia coli met repressor with and without corepressor. Nature, 341, 705-710.
-
(1989)
Nature
, vol.341
, pp. 705-710
-
-
Rafferty, J.B.1
Somers, W.S.2
Saint-Girons, I.3
Phillips, S.E.4
-
13
-
-
0039985836
-
The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator
-
Gomis-Ruth, F. X., Sola, M., Acebo, P., Parraga, A., Guasch, A., Eritja, R. et al. (1998). The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator. EMBO J. 17, 7404-7415.
-
(1998)
EMBO J.
, vol.17
, pp. 7404-7415
-
-
Gomis-Ruth, F.X.1
Sola, M.2
Acebo, P.3
Parraga, A.4
Guasch, A.5
Eritja, R.6
-
14
-
-
0032697047
-
NikR is a ribbon-helix-helix DNA-binding protein
-
Chivers, P. T. & Sauer, R. T. (1999). NikR is a ribbon-helix-helix DNA-binding protein. Protein Sci. 8, 2494-2500.
-
(1999)
Protein Sci.
, vol.8
, pp. 2494-2500
-
-
Chivers, P.T.1
Sauer, R.T.2
-
15
-
-
0032882219
-
Pseudomonas aeruginosa AlgZ, a ribbon-helix-helix DNA-binding protein, is essential for alginate synthesis and algD transcriptional activation
-
Baynham, P. J., Brown, A. L., Hall, L. L. & Wozniak, D. J. (1999). Pseudomonas aeruginosa AlgZ, a ribbon-helix-helix DNA-binding protein, is essential for alginate synthesis and algD transcriptional activation. Mol. Microbiol. 33, 1069-1080.
-
(1999)
Mol. Microbiol.
, vol.33
, pp. 1069-1080
-
-
Baynham, P.J.1
Brown, A.L.2
Hall, L.L.3
Wozniak, D.J.4
-
16
-
-
0035824885
-
Crystal structure of omega transcriptional repressor encoded by Streptococcus pyogenes plasmid pSM19035 at 1.5 Å resolution
-
Murayama, K., Orth, P., de la Hoz, A. B., Alonso, J. C. & Saenger, W. (2001). Crystal structure of omega transcriptional repressor encoded by Streptococcus pyogenes plasmid pSM19035 at 1.5 Å resolution. J. Mol. Biol. 314, 789-796.
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 789-796
-
-
Murayama, K.1
Orth, P.2
De La Hoz, A.B.3
Alonso, J.C.4
Saenger, W.5
-
17
-
-
0036182510
-
The anti-toxin ParD of plasmid RK2 consists of two structurally distinct moieties and belongs to the ribbon-helix-helix family of DNA-binding proteins
-
Oberer, M., Zangger, K., Prytulla, S. & Keller, W. (2002). The anti-toxin ParD of plasmid RK2 consists of two structurally distinct moieties and belongs to the ribbon-helix-helix family of DNA-binding proteins. Biochem. J. 361, 41-47.
-
(2002)
Biochem. J.
, vol.361
, pp. 41-47
-
-
Oberer, M.1
Zangger, K.2
Prytulla, S.3
Keller, W.4
-
18
-
-
0028177303
-
DNA recognition by beta-sheets in the Arc repressor-operator crystal structure
-
Raumann, B. E., Rould, M. A., Pabo, C. O. & Sauer, R. T. (1994). DNA recognition by beta-sheets in the Arc repressor-operator crystal structure. Nature, 367, 754-757.
-
(1994)
Nature
, vol.367
, pp. 754-757
-
-
Raumann, B.E.1
Rould, M.A.2
Pabo, C.O.3
Sauer, R.T.4
-
19
-
-
0026641755
-
Crystal structure of the met repressor-operator complex at 2.8 Å resolution reveals DNA recognition by beta-strands
-
Somers, W. S. & Phillips, S. E. (1992). Crystal structure of the met repressor-operator complex at 2.8 Å resolution reveals DNA recognition by beta-strands. Nature, 359, 387-393.
-
(1992)
Nature
, vol.359
, pp. 387-393
-
-
Somers, W.S.1
Phillips, S.E.2
-
20
-
-
0035816213
-
Plasmid transcriptional repressor CopG oligomerises to render helical superstructures unbound and in complexes with oligonucleotides
-
Costa, M., Sola, M., del Solar, G., Eritja, R., Hernandez-Arriaga, A. M., Espinosa, M. et al. (2001). Plasmid transcriptional repressor CopG oligomerises to render helical superstructures unbound and in complexes with oligonucleotides. J. Mol. Biol. 310, 403-417.
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 403-417
-
-
Costa, M.1
Sola, M.2
Del Solar, G.3
Eritja, R.4
Hernandez-Arriaga, A.M.5
Espinosa, M.6
-
21
-
-
0028224359
-
Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations
-
Bonvin, A. M., Vis, H., Breg, J. N., Burgering, M. J., Boelens, R. & Kaptein, R. (1994). Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations. J. Mol. Biol. 236, 328-341.
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 328-341
-
-
Bonvin, A.M.1
Vis, H.2
Breg, J.N.3
Burgering, M.J.4
Boelens, R.5
Kaptein, R.6
-
22
-
-
0003135179
-
Specific beta-sheet interactions
-
Phillips, S. E. V. (1991). Specific beta-sheet interactions. Curr. Opin. Struct. Biol. 1, 89-98.
-
(1991)
Curr. Opin. Struct. Biol.
, vol.1
, pp. 89-98
-
-
Phillips, S.E.V.1
-
23
-
-
0028147466
-
Major groove DNA recognition by beta-sheets: The ribbon-helix-helix family of gene regulatory proteins
-
Raumann, B. E., Brown, B. M. & Sauer, R. T. (1994). Major groove DNA recognition by beta-sheets: the ribbon-helix-helix family of gene regulatory proteins. Curr. Opin. Struct. Biol. 4, 36-43.
-
(1994)
Curr. Opin. Struct. Biol.
, vol.4
, pp. 36-43
-
-
Raumann, B.E.1
Brown, B.M.2
Sauer, R.T.3
-
24
-
-
0031916824
-
Biophysical characterization of the TraY protein of Escherichia coli F factor
-
Schildbach, J. F., Robinson, C. R. & Sauer, R. T. (1998). Biophysical characterization of the TraY protein of Escherichia coli F factor. J. Biol. Chem. 273, 1329-1333.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 1329-1333
-
-
Schildbach, J.F.1
Robinson, C.R.2
Sauer, R.T.3
-
25
-
-
0024419731
-
Cooperative tandem binding of met repressor of Escherichia coli
-
Phillips, S. E., Manfield, I., Parsons, I., Davidson, B. E., Rafferty, J. B., Somers, W. S. et al. (1989). Cooperative tandem binding of met repressor of Escherichia coli. Nature, 341, 711-715.
-
(1989)
Nature
, vol.341
, pp. 711-715
-
-
Phillips, S.E.1
Manfield, I.2
Parsons, I.3
Davidson, B.E.4
Rafferty, J.B.5
Somers, W.S.6
-
26
-
-
0029899661
-
The F plasmid traY gene product binds DNA as a monomer or a dimer: Structural and functional implications
-
Nelson, W. C. & Matson, S. W. (1996). The F plasmid traY gene product binds DNA as a monomer or a dimer: structural and functional implications. Mol. Microbiol. 20, 1179-1187.
-
(1996)
Mol. Microbiol.
, vol.20
, pp. 1179-1187
-
-
Nelson, W.C.1
Matson, S.W.2
-
27
-
-
0028304297
-
Mutational and physical analysis of F plasmid traY protein binding to oriT
-
Luo, Y., Gao, Q. & Deonier, R. C. (1994). Mutational and physical analysis of F plasmid traY protein binding to oriT. Mol. Microbiol. 11, 459-469.
-
(1994)
Mol. Microbiol.
, vol.11
, pp. 459-469
-
-
Luo, Y.1
Gao, Q.2
Deonier, R.C.3
-
28
-
-
0029048582
-
P22 Arc repressor: Role of cooperativity in repression and binding to operators with altered half-site spacing
-
Smith, T. L. & Sauer, R. T. (1995). P22 Arc repressor: role of cooperativity in repression and binding to operators with altered half-site spacing. J. Mol. Biol. 249, 729-742.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 729-742
-
-
Smith, T.L.1
Sauer, R.T.2
-
29
-
-
0001268975
-
Hydroxyl radical "footprinting" high-resolution information about DNA-protein contacts and application to lambda repressor and Cro protein
-
Tullius, T. D. & Dombroski, B. A. (1986). Hydroxyl radical "footprinting" high-resolution information about DNA-protein contacts and application to lambda repressor and Cro protein. Proc. Natl Acad. Sci. USA, 83, 5469-5473.
-
(1986)
Proc. Natl Acad. Sci. USA
, vol.83
, pp. 5469-5473
-
-
Tullius, T.D.1
Dombroski, B.A.2
-
30
-
-
0025362228
-
Plasmid pLS1-encoded RepA protein regulates transcription from repAB promoter by binding to a DNA sequence containing a 13-base pair symmetric element
-
del Solar, G. H., Perez-Martin, J. & Espinosa, M. (1990). Plasmid pLS1-encoded RepA protein regulates transcription from repAB promoter by binding to a DNA sequence containing a 13-base pair symmetric element. J. Biol. Chem. 265, 12569-12575.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 12569-12575
-
-
Del Solar, G.H.1
Perez-Martin, J.2
Espinosa, M.3
-
31
-
-
0035914472
-
A new trick for an old dog: TraY binding to a homopurine-homopyrimidine run attenuates DNA replication
-
Krasilnikova, M. M., Smirnova, E. V., Krasilnikoa, A. S. & Mirkin, S. M. (2001). A new trick for an old dog: TraY binding to a homopurine-homopyrimidine run attenuates DNA replication. J. Mol. Biol. 313, 271-282.
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 271-282
-
-
Krasilnikova, M.M.1
Smirnova, E.V.2
Krasilnikoa, A.S.3
Mirkin, S.M.4
-
32
-
-
0034681134
-
Plasmid copy-number control and better-than-random segregation genes of pSM19035 share a common regulator
-
de la Hoz, A. B., Ayora, S., Sitkiewicz, I., Fernandez, S., Pankiewicz, R., Alonso, J. C. & Ceglowski, P. (2000). Plasmid copy-number control and better-than-random segregation genes of pSM19035 share a common regulator. Proc. Natl Acad. Sci. USA, 97, 728-733.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 728-733
-
-
De La Hoz, A.B.1
Ayora, S.2
Sitkiewicz, I.3
Fernandez, S.4
Pankiewicz, R.5
Alonso, J.C.6
Ceglowski, P.7
-
33
-
-
0003903343
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook, J., Fritsch, E. F. & Maniatis, F. (1989). Molecular Cloning: A Laboratory Manual, 2nd edit., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Edit.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, F.3
-
34
-
-
0030667673
-
DNA binding specificity of the CCAAT-binding factor CBF/NF-Y
-
Bi, W., Wu, L., Coustry, F., de Crombrugghe, B. & Maity, S. N. (1997). DNA binding specificity of the CCAAT-binding factor CBF/NF-Y. J. Biol. Chem. 272, 26562-26572.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 26562-26572
-
-
Bi, W.1
Wu, L.2
Coustry, F.3
De Crombrugghe, B.4
Maity, S.N.5
-
35
-
-
0026335587
-
Hydroxyl radical footprinting
-
Dixon, W. J., Hayes, J. J., Levin, J. R., Weidner, M. F., Dombroski, B. A. & Tullius, T. D. (1991). Hydroxyl radical footprinting. Methods Enzymol. 208, 380-413.
-
(1991)
Methods Enzymol.
, vol.208
, pp. 380-413
-
-
Dixon, W.J.1
Hayes, J.J.2
Levin, J.R.3
Weidner, M.F.4
Dombroski, B.A.5
Tullius, T.D.6
-
36
-
-
0028250770
-
Identification of protein-DNA contacts with dimethyl sulfate. Methylation protection and methylation interference
-
Shaw, P. E. & Stewart, A. F. (1994). Identification of protein-DNA contacts with dimethyl sulfate. Methylation protection and methylation interference. Methods Mol. Biol. 30, 79-87.
-
(1994)
Methods Mol. Biol.
, vol.30
, pp. 79-87
-
-
Shaw, P.E.1
Stewart, A.F.2
-
37
-
-
0025572707
-
Differences and similarities in DNA-binding preferences of MyoD and E2A protein complexes revealed by binding site selection
-
Blackwell, T. K. & Weintraub, H. (1990). Differences and similarities in DNA-binding preferences of MyoD and E2A protein complexes revealed by binding site selection. Science, 250, 1104-1110.
-
(1990)
Science
, vol.250
, pp. 1104-1110
-
-
Blackwell, T.K.1
Weintraub, H.2
-
38
-
-
0017806223
-
Boundary analysis of sedimentation velocity experiments with monodisperse and paucidisperse solutions
-
van Holde, K. E. & Weischet, W. O. (1978). Boundary analysis of sedimentation velocity experiments with monodisperse and paucidisperse solutions. Biopolymers, 17, 1387-1403.
-
(1978)
Biopolymers
, vol.17
, pp. 1387-1403
-
-
Van Holde, K.E.1
Weischet, W.O.2
-
39
-
-
0031020113
-
Identification and interpretation of complexity in sedimentation velocity boundaries
-
Demeler, B., Saber, H. & Hansen, J. C. (1997). Identification and interpretation of complexity in sedimentation velocity boundaries. Biophys. J. 72, 397-407.
-
(1997)
Biophys. J.
, vol.72
, pp. 397-407
-
-
Demeler, B.1
Saber, H.2
Hansen, J.C.3
-
40
-
-
0031982612
-
Determination of molecular parameters by fitting sedimentation data to finite-element solutions of the Lamm equation
-
Demeler, B. & Saber, H. (1998). Determination of molecular parameters by fitting sedimentation data to finite-element solutions of the Lamm equation. Biophys. J. 74, 444-454.
-
(1998)
Biophys. J.
, vol.74
, pp. 444-454
-
-
Demeler, B.1
Saber, H.2
-
41
-
-
0002498995
-
Computer-aided interpretation of analytical sedimentation data for proteins
-
Harding, S. & Rowe, A., eds, Royal Society of Chemistry, London
-
Laue, T. M., Shah, B. D., Ridgeway, T. M. & Pellitier, S. L. (1992). Computer-aided interpretation of analytical sedimentation data for proteins. In Analytical Ultracentrifugation in Biochemistry and Polymer Science (Harding, S. & Rowe, A., eds), pp. 90-125, Royal Society of Chemistry, London.
-
(1992)
Analytical Ultracentrifugation in Biochemistry and Polymer Science
, pp. 90-125
-
-
Laue, T.M.1
Shah, B.D.2
Ridgeway, T.M.3
Pellitier, S.L.4
-
42
-
-
0003512158
-
-
Rheinhold, New York
-
Cohn, E. J. & Edsall, J. T. (1943). Proteins, Amino Acids, and Peptides as Ions and Dipolar Ions, Rheinhold, New York.
-
(1943)
Proteins, Amino Acids, and Peptides as Ions and Dipolar Ions
-
-
Cohn, E.J.1
Edsall, J.T.2
-
43
-
-
0002258696
-
Specific volumes of biological macromolecules and some other molecules of biological interest
-
Hinz, H.-J., ed., Springer, New York
-
Durchschlag, H. (1986). Specific volumes of biological macromolecules and some other molecules of biological interest. In Thermodynamic Data for Biochemistry and Biotechnology (Hinz, H.-J., ed.), pp. 45-128, Springer, New York.
-
(1986)
Thermodynamic Data for Biochemistry and Biotechnology
, pp. 45-128
-
-
Durchschlag, H.1
|