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Volumn 97, Issue 4, 1998, Pages 591-604

Length polymorphism and allele structure of trinucleotide microsatellites in natural accessions of Arabidopsis thaliana

Author keywords

Arabidopsis thaliana; Genetic diversity; Microsatellite; Simple sequence length polymorphism; Trinucleotide repeats

Indexed keywords

ALLELE; DNA FLANKING REGION; DNA POLYMORPHISM; GENE LOCUS; GENETIC DIVERSITY; HETEROZYGOTE; MICROSATELLITE DNA; OUTCROSSING; PHYLOGENY; POLYMERASE CHAIN REACTION; SELFING; TRINUCLEOTIDE REPEAT;

EID: 0031720588     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220050935     Document Type: Article
Times cited : (41)

References (56)
  • 1
    • 11944253037 scopus 로고
    • Toward a unified approach to genetic mapping of eukaryotes based on sequence tagged microsatellite sites
    • Beckmann JS, Soller M (1990) Toward a unified approach to genetic mapping of eukaryotes based on sequence tagged microsatellite sites. Biotechnology 8:930-932
    • (1990) Biotechnology , vol.8 , pp. 930-932
    • Beckmann, J.S.1    Soller, M.2
  • 2
    • 0026518648 scopus 로고
    • Survey of human and rat microsatellites
    • Beckmann JS, Weber JL (1992) Survey of human and rat microsatellites. Genomics 12:627-631
    • (1992) Genomics , vol.12 , pp. 627-631
    • Beckmann, J.S.1    Weber, J.L.2
  • 3
    • 0028055069 scopus 로고
    • Assignment of 30 microsatellite loci to the linkage map of Arabidopsis
    • Bell CJ, Ecker JR (1994) Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics 19:137-144
    • (1994) Genomics , vol.19 , pp. 137-144
    • Bell, C.J.1    Ecker, J.R.2
  • 5
    • 0029671228 scopus 로고    scopus 로고
    • Characterization and genetic mapping of simple repeat sequences in the tomato genome
    • Broun P, Tanksley SD (1996) Characterization and genetic mapping of simple repeat sequences in the tomato genome. Mol Gen Genet 250:39-49
    • (1996) Mol Gen Genet , vol.250 , pp. 39-49
    • Broun, P.1    Tanksley, S.D.2
  • 11
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh tissues
    • Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh tissues. Phytochem Bull 19:11-15
    • (1987) Phytochem Bull , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 12
    • 0030377876 scopus 로고    scopus 로고
    • Characterization of microsatellile markers in eastern white pine
    • Echt CS, May-Marquardt P, Hseih M, Zahorchak R (1996) Characterization of microsatellile markers in eastern white pine. Genome 39:1102-1108
    • (1996) Genome , vol.39 , pp. 1102-1108
    • Echt, C.S.1    May-Marquardt, P.2    Hseih, M.3    Zahorchak, R.4
  • 13
    • 0027142748 scopus 로고
    • CT-n and (GT)-n microsatellites: A new class of genetic markers for Salmo trutta L. (brown trout)
    • Estoup A, Presa P, Krieg F, Vaiman D. Guyomard R (1993) (CT)-n and (GT)-n microsatellites: a new class of genetic markers for Salmo trutta L. (brown trout). Heredity 71:488-496
    • (1993) Heredity , vol.71 , pp. 488-496
    • Estoup, A.1    Presa, P.2    Krieg, F.3    Vaiman, D.4    Guyomard, R.5
  • 14
    • 0028883475 scopus 로고
    • Microsatellite variation in North American populations of Drosophila melanogaster
    • Goldstein DB, Clark AG (1995) Microsatellite variation in North American populations of Drosophila melanogaster. Nucleic Acids Res 23:3882-3886
    • (1995) Nucleic Acids Res , vol.23 , pp. 3882-3886
    • Goldstein, D.B.1    Clark, A.G.2
  • 17
    • 0030460925 scopus 로고    scopus 로고
    • Genetic similarity among Arabidopsis thaliana ecotypes estimated by DNA sequence comparison
    • Hardlke CS, Müller J, Berleth T (1996) Genetic similarity among Arabidopsis thaliana ecotypes estimated by DNA sequence comparison. Plant Mol Biol 32:915-922
    • (1996) Plant Mol Biol , vol.32 , pp. 915-922
    • Hardlke, C.S.1    Müller, J.2    Berleth, T.3
  • 18
    • 0029411657 scopus 로고
    • Phenotypic and genotypic variation in the interaction between Arabidopsis thaliana and Albugo candida
    • Holub EB, Brosc E, Tör M. Clay C, Crute IR, Beynon JL (1995) Phenotypic and genotypic variation in the interaction between Arabidopsis thaliana and Albugo candida. Mol Plant Microbe Interact 8:916-928
    • (1995) Mol Plant Microbe Interact , vol.8 , pp. 916-928
    • Holub, E.B.1    Brosc, E.2    Tör, M.3    Clay, C.4    Crute, I.R.5    Beynon, J.L.6
  • 19
    • 0029796494 scopus 로고    scopus 로고
    • Intragenic recombination in the Adh locus of a wild plant Arabidopsis thaliana
    • Innan H. Tajima F. Terauchi R, Miyashita NT (1996) Intragenic recombination in the Adh locus of a wild plant Arabidopsis thaliana. Genetics 143:1761-1770
    • (1996) Genetics , vol.143 , pp. 1761-1770
    • Innan, H.1    Tajima, F.2    Terauchi, R.3    Miyashita, N.T.4
  • 20
    • 0030803875 scopus 로고    scopus 로고
    • Microsatellite polymorphism in natural populations of the wild plant Arabidopsis thaliana
    • Innan H, Terauchi R, Miyashita NT (1997) Microsatellite polymorphism in natural populations of the wild plant Arabidopsis thaliana. Genetics 146:1441-1452
    • (1997) Genetics , vol.146 , pp. 1441-1452
    • Innan, H.1    Terauchi, R.2    Miyashita, N.T.3
  • 21
    • 0043015531 scopus 로고    scopus 로고
    • Microsatellites, from molecules to populations and back
    • Jarne P, Lagoda PJL (1996) Microsatellites, from molecules to populations and back. Trends Ecol Evol 11:424-429
    • (1996) Trends Ecol Evol , vol.11 , pp. 424-429
    • Jarne, P.1    Lagoda, P.J.L.2
  • 22
    • 33847423646 scopus 로고
    • Genetic similarity among ecotypes of Arabidopsis thaliana estimated by analysis of restriction fragment length polymorphisms
    • King G, Nienhuis J, Hussey C (1993) Genetic similarity among ecotypes of Arabidopsis thaliana estimated by analysis of restriction fragment length polymorphisms. Theor Appl Genet 86:1028-1032
    • (1993) Theor Appl Genet , vol.86 , pp. 1028-1032
    • King, G.1    Nienhuis, J.2    Hussey, C.3
  • 23
    • 0027285192 scopus 로고
    • The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates
    • Lagercrantz U, Ellegren H, Andersson L (1993) The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Res 21:1111-1115
    • (1993) Nucleic Acids Res , vol.21 , pp. 1111-1115
    • Lagercrantz, U.1    Ellegren, H.2    Andersson, L.3
  • 24
    • 0023256559 scopus 로고
    • Slipped-strand mispairing: A major mechanism for DNA sequence evolution
    • Levinson G, Gutman GA (1987) Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4:203-221
    • (1987) Mol Biol Evol , vol.4 , pp. 203-221
    • Levinson, G.1    Gutman, G.A.2
  • 25
    • 0000012426 scopus 로고
    • Recombinant inbred for mapping RFLP and phenotypic markers in Arabidopsis thaliana
    • Lister C. Dean C (1993) Recombinant inbred for mapping RFLP and phenotypic markers in Arabidopsis thaliana. Plant J 4: 745-750
    • (1993) Plant J , vol.4 , pp. 745-750
    • Lister, C.1    Dean, C.2
  • 26
    • 0001822883 scopus 로고    scopus 로고
    • The latest RI map using Lister and Dean RI lines
    • Lister C. Dean C (1997) The latest RI map using Lister and Dean RI lines. Weeds World 4:1-10
    • (1997) Weeds World , vol.4 , pp. 1-10
    • Lister, C.1    Dean, C.2
  • 27
    • 0024514081 scopus 로고
    • A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene
    • Litt M. Luty JA (1989) A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am J Hum Genet 44:397-401
    • (1989) Am J Hum Genet , vol.44 , pp. 397-401
    • Litt, M.1    Luty, J.A.2
  • 28
    • 0030268467 scopus 로고    scopus 로고
    • Isolation and mapping of a new set of 129 RFLP markers in Arabidopsis thaliana using recombinant inbred lines
    • Liu Y-G, Mitsukawa N, Lister C, Dean C, Whittier RF (1996) Isolation and mapping of a new set of 129 RFLP markers in Arabidopsis thaliana using recombinant inbred lines. Plant J 10:733-736
    • (1996) Plant J , vol.10 , pp. 733-736
    • Liu, Y.-G.1    Mitsukawa, N.2    Lister, C.3    Dean, C.4    Whittier, R.F.5
  • 29
    • 0000043735 scopus 로고
    • Identification of compatible and incompatible interactions between Arabidopsis thaliana and X anthomonas campestris pv. campestris and characterization of the hypersensitive response
    • Lummerzheim M, de Oliveira D. Castresana C, Miguens FC, Louzada E, Roby D, van Montagu M. Timmerman B (1993) Identification of compatible and incompatible interactions between Arabidopsis thaliana and X anthomonas campestris pv. campestris and characterization of the hypersensitive response. Mol Plant Microbe Interact 6:532-544
    • (1993) Mol Plant Microbe Interact , vol.6 , pp. 532-544
    • Lummerzheim, M.1    De Oliveira, D.2    Castresana, C.3    Miguens, F.C.4    Louzada, E.5    Roby, D.6    Van Montagu, M.7    Timmerman, B.8
  • 30
    • 0024979254 scopus 로고
    • Arabidopsis, a useful weed
    • Meyerowitz EM (1989) Arabidopsis, a useful weed. Cell 56: 263-269
    • (1989) Cell , vol.56 , pp. 263-269
    • Meyerowitz, E.M.1
  • 31
    • 0025721084 scopus 로고
    • The conservation of dinucleotide microsatellites among mammalian genomes allows the use of heterologous PCR primer pairs in closely related species
    • Moore SS, Sargeant LL, King TJ. Mattick JS, Georges M. Hetzel DJS (1991) The conservation of dinucleotide microsatellites among mammalian genomes allows the use of heterologous PCR primer pairs in closely related species. Genomics 10: 654-660
    • (1991) Genomics , vol.10 , pp. 654-660
    • Moore, S.S.1    Sargeant, L.L.2    King, T.J.3    Mattick, J.S.4    Georges, M.5    Hetzel, D.J.S.6
  • 32
    • 0027178849 scopus 로고
    • Microsatellite repeats in pig (Sus domestica) and chicken (Gallus domesticus) genomes
    • Moran C (1993) Microsatellite repeats in pig (Sus domestica) and chicken (Gallus domesticus) genomes. J Hered 84:274-280
    • (1993) J Hered , vol.84 , pp. 274-280
    • Moran, C.1
  • 33
    • 0027357965 scopus 로고
    • PCR-amplified microsatellites as markers in plant genetics
    • Morgante M. Olivieri AM (1993) PCR-amplified microsatellites as markers in plant genetics. Plant J 3:175-182
    • (1993) Plant J , vol.3 , pp. 175-182
    • Morgante, M.1    Olivieri, A.M.2
  • 34
    • 0015765702 scopus 로고
    • The model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a genetic population
    • Ohta T, Kimura M (1973) The model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a genetic population. Genet Res 22:201-204
    • (1973) Genet Res , vol.22 , pp. 201-204
    • Ohta, T.1    Kimura, M.2
  • 35
    • 0029557027 scopus 로고
    • Frequency of microsatellite sequences in rice (Oryza sativa L.)
    • Panaud O, Chen X, McCouch SR (1995) Frequency of microsatellite sequences in rice (Oryza sativa L.). Genome 38:1170-1176
    • (1995) Genome , vol.38 , pp. 1170-1176
    • Panaud, O.1    Chen, X.2    McCouch, S.R.3
  • 36
    • 0030218889 scopus 로고    scopus 로고
    • Four Arabidopsis RPP loci controlling resistance to the Noco2 isolate of Peronospora parasitica map to regions known to contain other RPP recognition specificities
    • Reignault P, Frost LN, Richardson H, Daniels MJ, Jones JDG, Parker JE (1996) Four Arabidopsis RPP loci controlling resistance to the Noco2 isolate of Peronospora parasitica map to regions known to contain other RPP recognition specificities. Mol Plant Microbe Interact 9:464-473
    • (1996) Mol Plant Microbe Interact , vol.9 , pp. 464-473
    • Reignault, P.1    Frost, L.N.2    Richardson, H.3    Daniels, M.J.4    Jones, J.D.G.5    Parker, J.E.6
  • 37
    • 0030006814 scopus 로고    scopus 로고
    • 470 million years of conservation of microsatellite loci among fish species
    • Rico C, Rico I, Hewitt G (1996) 470 million years of conservation of microsatellite loci among fish species. Proc R Soc London (Ser) B Biol Sci 263:549-557
    • (1996) Proc R Soc London (Ser) B Biol Sci , vol.263 , pp. 549-557
    • Rico, C.1    Rico, I.2    Hewitt, G.3
  • 39
    • 23444454614 scopus 로고
    • Extraordinarily polymorphic microsatellite DNA in barley: Species diversity, chromosomal locations, and population dynamics
    • Saghai Maroof MA, Biyashev RM, Yang GP, Zhang Q, Allard RW (1994) Extraordinarily polymorphic microsatellite DNA in barley: species diversity, chromosomal locations, and population dynamics. Proc Natl Acad Sci USA 91:5466-5470
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 5466-5470
    • Saghai Maroof, M.A.1    Biyashev, R.M.2    Yang, G.P.3    Zhang, Q.4    Allard, R.W.5
  • 41
    • 0026542473 scopus 로고
    • Slippage synthesis of simple sequence DNA
    • Schlötterer C, Tautz D (1992) Slippage synthesis of simple sequence DNA. Nucleic Acids Res 20:211-215
    • (1992) Nucleic Acids Res , vol.20 , pp. 211-215
    • Schlötterer, C.1    Tautz, D.2
  • 42
    • 0029137861 scopus 로고
    • Abundance and polymorphism of di-, tri- and tetra-nucleotide tandem repeats in chickpea (Cicer arietinum L.)
    • Sharma PC, Winter P, Bünger B, Weigand F, Weising K, Kahl G (1995) Abundance and polymorphism of di-, tri- and tetra-nucleotide tandem repeats in chickpea (Cicer arietinum L.). Theor Appl Genet 90:90-96
    • (1995) Theor Appl Genet , vol.90 , pp. 90-96
    • Sharma, P.C.1    Winter, P.2    Bünger, B.3    Weigand, F.4    Weising, K.5    Kahl, G.6
  • 44
    • 0027306173 scopus 로고
    • Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair
    • Strand M, Prolla TA, Liskay RM, Petes TD (1993) Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair. Nature 365:274-276
    • (1993) Nature , vol.365 , pp. 274-276
    • Strand, M.1    Prolla, T.A.2    Liskay, R.M.3    Petes, T.D.4
  • 45
    • 0029786076 scopus 로고    scopus 로고
    • Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA
    • Takezaki N, Nei M (1996) Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 144: 389-399
    • (1996) Genetics , vol.144 , pp. 389-399
    • Takezaki, N.1    Nei, M.2
  • 46
    • 0030113221 scopus 로고    scopus 로고
    • Simple sequence repeats for germ-plasm analysis and mapping in maize
    • Taramino G, Tingey S (1996) Simple sequence repeats for germ-plasm analysis and mapping in maize. Genome 39:277-287
    • (1996) Genome , vol.39 , pp. 277-287
    • Taramino, G.1    Tingey, S.2
  • 47
    • 0024387394 scopus 로고
    • Hypervariability of simple sequences as a source for polymorphic DNA markers
    • Tautz D (1989) Hypervariability of simple sequences as a source for polymorphic DNA markers. Nucleic Acids Res 17:6463-6471
    • (1989) Nucleic Acids Res , vol.17 , pp. 6463-6471
    • Tautz, D.1
  • 48
    • 34250073136 scopus 로고
    • Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence-tagged sites (STSs)
    • Thomas MR, Scott NS (1993) Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence-tagged sites (STSs). Theor Appl Genet 86:985-990
    • (1993) Theor Appl Genet , vol.86 , pp. 985-990
    • Thomas, M.R.1    Scott, N.S.2
  • 49
    • 0029023131 scopus 로고
    • Microsatellite polymorphisms in natural populations of Arabidopsis thaliana in Japan
    • Todokoro S, Terauchi R, Kawano S (1995) Microsatellite polymorphisms in natural populations of Arabidopsis thaliana in Japan. Jpn J Genet 70:543-554
    • (1995) Jpn J Genet , vol.70 , pp. 543-554
    • Todokoro, S.1    Terauchi, R.2    Kawano, S.3
  • 50
    • 0027474097 scopus 로고
    • Allele frequencies at microsatellite loci: The stepwise mutation model revisited
    • Valdes AM, Slatkin M, Freimer NB (1993) Allele frequencies at microsatellite loci: the stepwise mutation model revisited. Genetics 133:733-749
    • (1993) Genetics , vol.133 , pp. 733-749
    • Valdes, A.M.1    Slatkin, M.2    Freimer, N.B.3
  • 51
    • 85115107592 scopus 로고
    • Agrobacterium tumefaciens-mediated transformation of Arabidopsis thaliana root explants by using kanamycin selection
    • Valvekens D, van Montagu M, van Lijsebettens M (1988) Agrobacterium tumefaciens-mediated transformation of Arabidopsis thaliana root explants by using kanamycin selection. Proc Natl Acad Sci USA 85:5536-5540
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 5536-5540
    • Valvekens, D.1    Van Montagu, M.2    Van Lijsebettens, M.3
  • 52
    • 0030842007 scopus 로고    scopus 로고
    • Population dynamics inferred from temporal variation at microsatellite loci in the selfing snail Bulinus truncatus
    • Viard F, Justy F, Jarne P (1997) Population dynamics inferred from temporal variation at microsatellite loci in the selfing snail Bulinus truncatus. Genetics 146:973-982
    • (1997) Genetics , vol.146 , pp. 973-982
    • Viard, F.1    Justy, F.2    Jarne, P.3
  • 54
    • 0000197075 scopus 로고
    • Human DNA polymorphisms based on length variations in simple-sequence tandem repeats
    • Tilgman S, Davies K (eds) Cold Spring Harbor Laboratory Press, New York
    • Weber JL (1990) Human DNA polymorphisms based on length variations in simple-sequence tandem repeats. In: Tilgman S, Davies K (eds) Genome analysis vol. 1: genetic and physical mapping. Cold Spring Harbor Laboratory Press, New York, pp 159-181
    • (1990) Genome Analysis Vol. 1: Genetic and Physical Mapping , vol.1 , pp. 159-181
    • Weber, J.L.1
  • 55
    • 0027519769 scopus 로고
    • Abundance, polymorphism and genetic mapping of microsatellites in rice
    • Wu KS, Tanksley SD (1993) Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol Gen Genet 241:225-235
    • (1993) Mol Gen Genet , vol.241 , pp. 225-235
    • Wu, K.S.1    Tanksley, S.D.2
  • 56
    • 0028316648 scopus 로고
    • Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification
    • Zietkiewicz E, Rafalski A, Labuda D (1994) Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20:176-183
    • (1994) Genomics , vol.20 , pp. 176-183
    • Zietkiewicz, E.1    Rafalski, A.2    Labuda, D.3


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