A homolog of FBP2/KSRP binds to localized mRNAs in Xenopus oocytes

Development

Volumn 129, Issue 24, 2002, Pages 5609-5619

  Kroll, Todd T ^a   Zhao, Wei Meng ^a   Jiang, Can ^a   Huber, Paul W ^a  

^a UNIVERSITY OF NOTRE DAME   (United States)

Author keywords

FUSE binding protein; KSRP; Prrp; RNA localization; Vg1 mRNA; VgRBP71; Xenopus; ZBP2

Indexed keywords

AMINO ACID; FBP2 PROTEIN; MESSENGER RNA; NUCLEOTIDE; REGULATOR PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; XENOPUS PROTEIN;

AMINO TERMINAL SEQUENCE; ANIMAL CELL; ARTICLE; CELL NUCLEUS; CONTROLLED STUDY; CYTOPLASM; EMBRYO; EMBRYO DEVELOPMENT; FEMALE; GENE EXPRESSION; GENE LIBRARY; IN VIVO STUDY; NONHUMAN; NUCLEOTIDE SEQUENCE; OOCYTE; OOCYTE CORTEX; OOCYTE DEVELOPMENT; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN INTERACTION; PROTEIN LOCALIZATION; PROTEIN PROCESSING; SEQUENCE HOMOLOGY; XENOPUS;

AMINO ACID SEQUENCE; ANIMALS; BLOTTING, NORTHERN; CYTOPLASM; DNA, COMPLEMENTARY; DOSE-RESPONSE RELATIONSHIP, DRUG; EPITOPES; FIBROBLASTS; GENE LIBRARY; MICROSCOPY, CONFOCAL; MOLECULAR SEQUENCE DATA; NEURONS; NUCLEAR PROTEINS; OOCYTES; PLASMIDS; PRECIPITIN TESTS; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; RNA; RNA, MESSENGER; RNA-BINDING PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; TIME FACTORS; TRANS-ACTIVATORS; TWO-HYBRID SYSTEM TECHNIQUES; XENOPUS; XENOPUS PROTEINS;

ANIMALIA;

EID: 0036923336     PISSN: 09501991     EISSN: None     Source Type: Journal    
DOI: 10.1242/dev.00160     Document Type: Article

References (58)

1. Bertrand, E., Chartrand, P., Schaefer, M., Shenoy, S. M., Singer, R. H. and Long, R. M. (1998). Localization of ASH1 mRNA particles in living yeast. Mol. Cell 2, 437-445.
2. Braddock, D. T., Louis, J. M., Baber, J. L., Levens, D. and Clore, G. M. (2002). Structure and dynamics of KH domains from FBP bound to single-stranded DNA. Nature 415, 1051-1056.
3. Breeden, L. and Nasmyth, K. (1985). Regulation of the yeast HO gene. Cold Spring Harb. Symp. Quant. Biol. 50, 643-650.
4. Bubunenko, M., Kress, T. L., Vempati, U. D., Mowry, K. L. and King, M. L. (2002). A consensus RNA signal that directs germ layer determinants to the vegetal cortex of Xenopus oocytes. Dev. Biol. 248, 82-92.
5. Buckanovich, R. J. and Darnell, R. B. (1997). The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo. Mol. Cell. Biol. 17, 3194-3201.
6. Chkheidze, A. N., Lyakhov, D. L., Makeyev, A. V., Morales, J., Kong, J. and Liebhaber, S. A. (1999). Assembly of the alpha-globin mRNA stability complex reflects binary interaction between the pyrimidine-rich 3′ untranslated region determinant and poly(C) binding protein alphaCP. Mol. Cell. Biol. 19, 4572-4581.
7. Cote, C. A., Gautreau, D., Denegre, J. M., Kress, T. L., Terry, N. A. and Mowry, K. L. (1999). A Xenopus protein related to hnRNP I has a role in cytoplasmic RNA localization. Mol. Cell 4, 431-437.
8. Dale, L., Matthews, G. and Colman, A. (1993). Secretion and mesoderm-inducing activity of the TGF-β-related domain of Xenopus Vg1. EMBO J. 12, 4471-4480.
9. Davis-Smyth, T., Duncan, R. C., Zheng, T., Michelotti, G. and Levens, D. (1996). The far upstream element-binding proteins comprise an ancient family of single-strand DNA-binding transactivators. J. Biol. Chem. 271, 31679-31687.
10. Dent, J. A., Polson, A. G. and Klymkowsky, M. W. (1989). A whole-mount immunocytochemical analysis of the expression of the intermediate filament protein vimentin in Xenopus. Development 105, 61-74.
11. Deshler, J. O., Highett, M. I., Abramson, T. and Schnapp, B. J. (1998). A highly conserved RNA-binding protein for cytoplasmic mRNA localization in vertebrates. Curr. Biol. 8, 489-496.
12. Deshler, J. O., Highett, M. I. and Schnapp, B. J. (1997). Localization of Xenopus Vg1 mRNA by Vera protein and the endoplasmic reticulum. Science 276, 1128-1131.
13. Dumont, J. N. (1972). Oogenesis in Xenopus laevis (Daudin) I. Stages of oocyte development in laboratory maintained animals. J. Morphol. 136, 153-180.
14. Duncan, R., Bazar, L., Michelotti, G., Tomonaga, T., Krutzsch, H., Avigan, M. and Levens, D. (1994). A sequence-specific, single-strand binding protein activates the far upstream element of c-myc and defines a new DNA-binding motif. Genes Dev. 8, 465-480.
15. Elisha, Z., Havin, L., Ringel, I. and Yisraeli, J. K. (1995). Vg1 RNA binding protein mediates the association of Vg1 RNA with micrombules in Xenopus oocytes. EMBO J. 14, 5109-5114.
16. Fan, X. C. and Steitz, J. A. (1998). HNS, a nuclear-cytoplasmic shuttling sequence in HuR. Proc. Natl. Acad. Sci. USA 95, 15293-15298.
17. Ferrandon, D., Elphick, L., Nusslein-Volhard, C. and St Johnston, D. (1994). Staufen protein associates with the 3′UTR of bicoid mRNA to form particles that move in a microtubule-dependent manner. Cell 79, 1221-1232.
18. Forristall, C., Pondel, M., Chen, L. and King, M. L. (1995). Patterns of localization and cytoskeletal association of two vegetally localized RNAs, Vg1 and Xcat-2. Development 121, 201-208.
19. Grossman, J. S., Meyer, M. I., Wang, Y. C., Mulligan, G. J., Kobayashi, R. and Helfman, D.M. (1998). The use of antibodies to the polypyrimidine tract binding protein (PTB) to analyze the protein components that assemble on alternatively spliced pre-mRNAs that use distant branch points. RNA 4, 613-625.
20. Gu, W., Pan, F., Zhang, H., Bassell, G. J. and Singer, R. H. (2002). A predominantly nuclear protein affecting cytoplasmic localization of β-actin mRNA in fibroblasts and neurons. J. Cell Biol. 156, 41-51.
21. Harlow, E. and Lane, D. (1988). Antibodies: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
22. Havin, L., Git, A., Elisha, Z., Oberman, F., Yaniv, K., Schwartz, S. P., Standart, N. and Yisraeli, J. K. (1998). RNA-binding protein conserved in both microtubule- and microfilament-based RNA localization. Genes Dev. 12, 1593-1598.
23. He, L., Weber, A. and Levens, D. (2000). Nuclear targeting determinants of the far upstream element binding protein, a c-myc transcription factor. Nucleic Acids Res. 28, 4558-4565.
24. Hemmati-Brivanlou, A., Frank, D., Bolce, M. E., Brown, B. D., Sive, H. L. and Harland, R. M. (1990). Localization of specific mRNAs in Xenopus embryos by whole-mount in situ hybridization. Development 110, 325-330.
25. Hoek, K. S., Kidd, G. J., Carson, J. H. and Smith, R. (1998). hnRNP A2 selectively binds the cytoplasmic transport sequence of myelin basic protein mRNA. Biochemistrv 37, 7021-7029.
26. Irwin, N., Baekelandt, V., Goritchenko, L. and Benowitz, L. I. (1997). Identification of two proteins that bind to a pyrimidine-rich sequence in the 3′-untranslated region of GAP-43 mRNA. Nucleic Acids Res. 25, 1281-1288.
27. Kaminski, A. and Jackson, R. J. (1998). The polypyrimidine tract binding protein (PTB) requirement for internal initiation of translation of cardiovirus RNAs is conditional rather than absolute. RNA 4, 626-638.
28. Kim, J. H., Hahm, B., Kim, Y. K., Choi, M. and Jang, S. K. (2000). Protein-Protein Interaction Among hnRNPs Shuttling Between Nucleus and Cytoplasm. J. Mol. Biol. 298, 395-405.
29. Kloc, M. and Etkin, L. D. (1995). Two distinct pathways for the localization of RNAs at the vegetal cortex in Xenopus oocytes. Development 121, 287-297.
30. Kloc, M., Zearfoss, N. R. and Elkin, L. D. (2002). Mechanisms of subcellular mRNA localization. Cell 108, 533-544.
31. Kwon, S., Abramson, T., Munro, T. P., John, C. M., Kohrmann, M. and Schnapp, B. J. (2002). UUCAC- and Vera-dependent localization of VegT RNA in Xenopus oocytes. Curr. Biol. 12, 558-564.
32. Lall, S., Francis-Lang, H., Flament, A., Norvell, A., Schupbach, T. and Ish-Horowicz, D. (1999). Squid hnRNP protein promotes apical cytoplasmic transport and localization of Drosophila pair-rule transcripts. Cell 98, 171-180.
33. Lellek, H., Kirsten, R., Diehl, I., Apostel, F., Buck, F. and Greeve, J. (2000). Purification and molecular cloning of a novel essential component of the apolipoprotein B mRNA editing enzyme-complex. J. Biol. Chem. 275, 19848-19856.
34. Lin, Q., Taylor, S. J. and Shalloway, D. (1997). Specificity and determinants of Sam68 RNA binding. Implications for the biological function of K homology domains. J. Biol. Chem. 272, 27274-27280.
35. Lipshitz, H. D. and Smibert, C. A. (2000). Mechanisms of RNA localization and translational regulation. Curr. Opin. Genet. Dev. 10, 476-488.
36. Liu, J., Akoulitchev, S., Weber, A., Ge, H., Chuikov, S., Libutti, D., Wang, X. W., Conaway, J. W., Harris, C. C., Conaway, R. C. et al. (2001). Defective interplay of activators and repressors with TFIH in xeroderma pigmentosum. Cell 104, 353-363.
37. Markovtsov, V., Nikolic, J. M., Goldman, J. A., Turck, C. W., Chou, M. Y. and Black, D. L. (2000). Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein. Mol. Cell. Biol. 20, 7463-7479.
38. Melton, D. A. (1987). Translocation of a localized maternal mRNA to the vegetal pole of Xenopus oocytes. Nature 328, 80-82.
39. Michael, W. M., Choi, M. and Dreyfuss, G. (1995). A nuclear export signal in hnRNP A1: a signal-mediated, temperature-dependent nuclear protein export pathway. Cell 83, 415-422.
40. Michael, W. M., Eder, P. S. and Dreyfuss, G. (1997). The K nuclear shuttling domain: a novel signal for nuclear import and nuclear export in the hnRNP K protein. EMBO J. 16, 3587-3598.
41. Min, H., Turck, C. W., Nikolic, J. M. and Black, D. L. (1997). A new regulatory protein, KSRP, mediates exon inclusion through an intronic splicing enhancer. Genes Dev. 11, 1023-1036.
42. Mohr, E. and Richter, D. (2001). Messenger RNA on the move: implications for cell polarity. Int. J. Biochem. Cell Biol. 33, 669-679.
43. Mowry, K. L. (1996). Complex formation between stage-specific oocyte factors and a Xenopus mRNA localization element. Proc. Natl. Acad. Sci. USA 93, 14608-14613.
44. Mowry, K. L. and Melton, D. A. (1992). Vegetal messenger RNA localization directed by a 340-nt RNA sequence element in Xenopus oocytes. Science 255, 991-994.
45. Nieuwkoop, P. D. and Faber, J. (1956). Normal Tables of Xenopus laevis Daudin. Amsterdam: Elsevier-North Holland.
46. Rehbein, M., Kindler, S., Horke, S. and Richter, D. (2000). Two trans-acting rat-brain proteins, MARTA1 and MARTA2, interact specifically with the dendritic targeting element in MAP2 mRNAs. Mol. Brain Res. 79, 192-201.
47. Ross, A. F., Oleynikov, Y., Kislauskis, E. H., Taneja, K. L. and Singer, R. H. (1997). Characterization of a β-actin mRNA zipcode-binding protein. Mol. Cell. Biol. 17, 2158-2165.
48. Schlüter, K., Jockusch, B. M. and Rothkegel, M. (1997). Profilins as regulators of actin dynamics. Biochim. Biophys. Acta 1359, 97-109.
49. Schroeder, K. E. and Yost, H. J. (1996). Xenopus poly (A) binding protein maternal RNA is localized during oogenesis and associated with large complexes in blastula. Dev. Genet. 19, 268-276.
50. Shen, C. P., Knoblich, J. A., Chan, Y. M., Jiang, M. M., Jan, L. Y. and Jan, Y. N. (1998). Miranda as a multidomain adapter linking apically localized Inscuteable and basally localized Staufen and Prospero during asymmetric cell division in Drosophila. Genes Dev. 12, 1837-1846.
51. Siomi, H., Matunis, M. J., Michael, W. M. and Dreyfuss, G. (1993). The pre-mRNA binding K protein contains a novel evolutionarily conserved motif. Nucleic Acids Res. 21, 1193-1198.
52. Thomsen, G. H. and Melton, D. A. (1993). Processed Vg1 protein is an axial mesoderm inducer in Xenopus. Cell 74, 433-441.
53. Vindigni, A., Ochem, A., Triolo, G. and Falaschi, A. (2001). Identification of human DNA helicase V with the far upstream element-binding protein. Nucleic Acids Res. 29, 1061-1067.
54. Weeks, D. L. and Melton, D. A. (1987). A maternal mRNA localized to the vegetal hemisphere in Xenopus eggs codes for a growth factor related to TGF-β. Cell 51, 861-867.
55. Wilhelm, J. E., Mansfield, J., Hom-Booher, N., Wang, S., Turck, C. W., Hazelrigg, T. and Vale, R. D. (2000). Isolation of a ribonucleoprotein complex involved in mRNA localization in Drosophila oocytes. J. Cell Biol. 148, 427-440.
56. Yaniv, K. and Yisraeli, J. K. (2001). Defining cis-acting elements and trans-acting factors in RNA localization. Int. Rev. Cytol. 203, 521-539.
57. Zhao, W.-m., Jiang, C., Kroll, T. T. and Huber, P. W. (2001). A proline-rich protein binds to the localization element of Xenopus Vg1 mRNA and to ligands involved in actin polymerization. EMBO J. 20, 2315-2325.
58. Zhou, Y. and King, M. L. (1996). RNA transport to the vegetal cortex of Xenopus oocytes. Dev. Biol. 179, 173-183.