-
1
-
-
0001422329
-
Quantitative model for gene regulation by lambda phage repressor
-
Ackers, G. K., A. D. Johnson, and M. A. Shea. 1982. Quantitative model for gene regulation by lambda phage repressor. Proc. Natl. Acad. Sci. USA 79:1129-1133.
-
(1982)
Proc. Natl. Acad. Sci. USA
, vol.79
, pp. 1129-1133
-
-
Ackers, G.K.1
Johnson, A.D.2
Shea, M.A.3
-
2
-
-
0020510997
-
Free energy coupling within macromolecules. The chemical work of ligand binding at the individual sites in co-operative systems
-
Ackers, G. K., M. A. Shea, and F. R. Smith. 1983. Free energy coupling within macromolecules. The chemical work of ligand binding at the individual sites in co-operative systems. J. Mol. Biol. 170:223-242.
-
(1983)
J. Mol. Biol.
, vol.170
, pp. 223-242
-
-
Ackers, G.K.1
Shea, M.A.2
Smith, F.R.3
-
3
-
-
0023392267
-
A method for gene disruption that allows repeated use of URA3 selection in the construction of multiply disrupted yeast strains
-
Alani, E., L. Cao, and N. Kleckner. 1987. A method for gene disruption that allows repeated use of URA3 selection in the construction of multiply disrupted yeast strains. Genetics 116:541-545.
-
(1987)
Genetics
, vol.116
, pp. 541-545
-
-
Alani, E.1
Cao, L.2
Kleckner, N.3
-
4
-
-
0029120954
-
Solution structure of the C-terminal core domain of human TFIIB: Similarity to cyclin A and interaction with TATA-binding protein
-
Bagby, S., S. Kim, E. Maldonado, K. I. Tong, D. Reinberg, and M. Ikura. 1995. Solution structure of the C-terminal core domain of human TFIIB: Similarity to cyclin A and interaction with TATA-binding protein. Cell 82:857-867.
-
(1995)
Cell
, vol.82
, pp. 857-867
-
-
Bagby, S.1
Kim, S.2
Maldonado, E.3
Tong, K.I.4
Reinberg, D.5
Ikura, M.6
-
5
-
-
0030987325
-
Structure-function analysis of TAF130: Identification and characterization of a high-affinity TATA-binding protein interaction domain in the N terminus of yeast TAF(II)130
-
Bai, Y., G. M. Perez, J. M. Beechem, and P. A. Weil. 1997. Structure-function analysis of TAF130: Identification and characterization of a high-affinity TATA-binding protein interaction domain in the N terminus of yeast TAF(II)130. Mol. Cell. Biol. 17:3081-3093.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 3081-3093
-
-
Bai, Y.1
Perez, G.M.2
Beechem, J.M.3
Weil, P.A.4
-
6
-
-
0027285365
-
Delineation of two functional regions of transcription factor TFIIB
-
Barberis, A., C. W. Muller, S. C. Harrison, and M. Ptashne. 1993. Delineation of two functional regions of transcription factor TFIIB. Proc. Natl. Acad. Sci. USA 90:5628-5632.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 5628-5632
-
-
Barberis, A.1
Muller, C.W.2
Harrison, S.C.3
Ptashne, M.4
-
7
-
-
0024977414
-
Five intermediate complexes in transcription initiation by RNA polymerase II
-
Buratowski, S., S. Hahn, L. Guarente, and P. A. Sharp. 1989. Five intermediate complexes in transcription initiation by RNA polymerase II. Cell 56:549-561.
-
(1989)
Cell
, vol.56
, pp. 549-561
-
-
Buratowski, S.1
Hahn, S.2
Guarente, L.3
Sharp, P.A.4
-
8
-
-
0027315873
-
Functional domains of transcription factor TFIIB
-
Buratowski, S., and H. Zhou. 1993. Functional domains of transcription factor TFIIB. Proc. Natl. Acad. Sci. USA 90:5633-5637.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 5633-5637
-
-
Buratowski, S.1
Zhou, H.2
-
9
-
-
0026507091
-
Transcription factor IID mutants defective for interaction with transcription factor IIA
-
Buratowski, S., and H. Zhou. 1992. Transcription factor IID mutants defective for interaction with transcription factor IIA. Science 255:1130-1132.
-
(1992)
Science
, vol.255
, pp. 1130-1132
-
-
Buratowski, S.1
Zhou, H.2
-
10
-
-
0027250617
-
Crystal structure of yeast TATA-binding protein and model for interaction with DNA
-
Chasman, D. I., K. M. Flaherty, P. A. Sharp, and R. D. Kornberg. 1993. Crystal structure of yeast TATA-binding protein and model for interaction with DNA. Proc. Natl. Acad. Sci. USA 90:8174-8178.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 8174-8178
-
-
Chasman, D.I.1
Flaherty, K.M.2
Sharp, P.A.3
Kornberg, R.D.4
-
11
-
-
0033520279
-
Evidence that transcription factor IIB is required for a post-assembly step in transcription initiation
-
Cho, E. J., and S. Buratowski. 1999. Evidence that transcription factor IIB is required for a post-assembly step in transcription initiation. J. Biol. Chem. 274:25807-25813.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 25807-25813
-
-
Cho, E.J.1
Buratowski, S.2
-
12
-
-
0030795734
-
Slow dimer dissociation of the TATA binding protein dictates the kinetics of DNA binding
-
Coleman, R. A., and B. F. Pugh. 1997. Slow dimer dissociation of the TATA binding protein dictates the kinetics of DNA binding. Proc. Natl. Acad. Sci. USA 94:7221-7226.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 7221-7226
-
-
Coleman, R.A.1
Pugh, B.F.2
-
13
-
-
0033197553
-
TFIIA regulates TBP and TFIID dimers
-
Coleman, R. A., A. K. Taggart, S. Burma, J. J. Chicca II, and B. F. Pugh. 1999. TFIIA regulates TBP and TFIID dimers. Mol. Cell 4:451-457.
-
(1999)
Mol. Cell
, vol.4
, pp. 451-457
-
-
Coleman, R.A.1
Taggart, A.K.2
Burma, S.3
Chicca J.J. II4
Pugh, B.F.5
-
14
-
-
0027504115
-
Regional codon randomization: Defining a TATA-binding protein surface required for RNA polymerase III transcription
-
Cormack, B. P., and K. Struhl. 1993. Regional codon randomization: Defining a TATA-binding protein surface required for RNA polymerase III transcription. Science 262:244-248.
-
(1993)
Science
, vol.262
, pp. 244-248
-
-
Cormack, B.P.1
Struhl, K.2
-
15
-
-
0026764896
-
SPT3 interacts with TFIID to allow normal transcription in Saccharomyces cerevisiae
-
Eisenmann, D. M., K. M. Arndt, S. L. Ricupero, J. W. Rooney, and F. Winston. 1992. SPT3 interacts with TFIID to allow normal transcription in Saccharomyces cerevisiae. Genes Dev. 6:1319-1331.
-
(1992)
Genes Dev.
, vol.6
, pp. 1319-1331
-
-
Eisenmann, D.M.1
Arndt, K.M.2
Ricupero, S.L.3
Rooney, J.W.4
Winston, F.5
-
16
-
-
0024465866
-
SPT15, the gene encoding the yeast TATA binding factor TFIID, is required for normal transcription initiation in vivo
-
Eisenmann, D. M., C. Dollard, and F. Winston. 1989. SPT15, the gene encoding the yeast TATA binding factor TFIID, is required for normal transcription initiation in vivo. Cell 58:1183-1191.
-
(1989)
Cell
, vol.58
, pp. 1183-1191
-
-
Eisenmann, D.M.1
Dollard, C.2
Winston, F.3
-
17
-
-
0029930779
-
Crystal structure of the yeast TFIIA/TBP/DNA complex
-
Geiger, J. H., S. Hahn, S. Lee, and P. B. Sigler. 1996. Crystal structure of the yeast TFIIA/TBP/DNA complex. Science 272:830-836.
-
(1996)
Science
, vol.272
, pp. 830-836
-
-
Geiger, J.H.1
Hahn, S.2
Lee, S.3
Sigler, P.B.4
-
18
-
-
0003666097
-
-
Academic Press, Inc., San Diego, Calif.
-
Guthrie, C., and G. R. Fink (ed.). 1991. Methods in Enzymology, Vol. 194. Guide to Yeast Genetics and Molecular Biology. Academic Press, Inc., San Diego, Calif.
-
(1991)
Methods in Enzymology, Vol. 194. Guide to Yeast Genetics and Molecular Biology
, vol.194
-
-
Guthrie, C.1
Fink, G.R.2
-
19
-
-
0027159966
-
Multiple functional domains of human transcription factor IIB: Distinct interactions with two general transcription factors and RNA polymerase II
-
Ha, I., S. Roberts, E. Maldonado, X. Sun, L. U. Kim, M. Green, and D. Reinberg. 1993. Multiple functional domains of human transcription factor IIB: Distinct interactions with two general transcription factors and RNA polymerase II. Genes Dev. 7:1021-1032.
-
(1993)
Genes Dev.
, vol.7
, pp. 1021-1032
-
-
Ha, I.1
Roberts, S.2
Maldonado, E.3
Sun, X.4
Kim, L.U.5
Green, M.6
Reinberg, D.7
-
20
-
-
0032474445
-
Human general transcription factor TFIIB: Conformational variability and interaction with VP16 activation domain
-
Hayashi, F., R. Ishima, D. Liu, K. I. Tong, S. Kim, D. Reinberg, S. Bagby, and M. Ikura. 1998. Human general transcription factor TFIIB: Conformational variability and interaction with VP16 activation domain. Biochemistry 37:7941-7951.
-
(1998)
Biochemistry
, vol.37
, pp. 7941-7951
-
-
Hayashi, F.1
Ishima, R.2
Liu, D.3
Tong, K.I.4
Kim, S.5
Reinberg, D.6
Bagby, S.7
Ikura, M.8
-
21
-
-
0027245019
-
Functional dissection of TFIIB domains required for TFIIB-TFIID-promoter complex formation and basal transcription activity
-
Hisatake, K., R. G. Roeder, and M. Horikoshi. 1993. Functional dissection of TFIIB domains required for TFIIB-TFIID-promoter complex formation and basal transcription activity. Nature 363:744-747.
-
(1993)
Nature
, vol.363
, pp. 744-747
-
-
Hisatake, K.1
Roeder, R.G.2
Horikoshi, M.3
-
22
-
-
0032540282
-
Contributions of the TATA box sequence to rate-limiting steps in transcription initiation by RNA polymerase II
-
Hoopes, B. C., J. F. LeBlanc, and D. K. Hawley. 1998. Contributions of the TATA box sequence to rate-limiting steps in transcription initiation by RNA polymerase II. J. Mol. Biol. 277:1015-1031.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 1015-1031
-
-
Hoopes, B.C.1
LeBlanc, J.F.2
Hawley, D.K.3
-
23
-
-
0026665954
-
Kinetic analysis of yeast TFIID-TATA box complex formation suggests a multi-step pathway
-
Hoopes, B. C., J. F. LeBlanc, and D. K. Hawley. 1992. Kinetic analysis of yeast TFIID-TATA box complex formation suggests a multi-step pathway. J. Biol. Chem. 267:11539-11547.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 11539-11547
-
-
Hoopes, B.C.1
LeBlanc, J.F.2
Hawley, D.K.3
-
24
-
-
0033621025
-
Dimer dissociation and thermosensitivity kinetics of the Saccharomyces cerevisiae and human TATA binding proteins
-
Jackson-Fisher, A. J., S. Burma, M. Portnoy, L. A. Schneeweis, R. A. Coleman, M. Mitra, C. Chitikila, and B. F. Pugh. 1999. Dimer dissociation and thermosensitivity kinetics of the Saccharomyces cerevisiae and human TATA binding proteins. Biochemistry 38:11340-11348.
-
(1999)
Biochemistry
, vol.38
, pp. 11340-11348
-
-
Jackson-Fisher, A.J.1
Burma, S.2
Portnoy, M.3
Schneeweis, L.A.4
Coleman, R.A.5
Mitra, M.6
Chitikila, C.7
Pugh, B.F.8
-
25
-
-
0033152140
-
A role for TBP dimerization in preventing unregulated gene expression
-
Jackson-Fisher, A. J., C. Chitikila, M. Mitra, and B. F. Pugh. 1999. A role for TBP dimerization in preventing unregulated gene expression. Mol. Cell 3:717-727.
-
(1999)
Mol. Cell
, vol.3
, pp. 717-727
-
-
Jackson-Fisher, A.J.1
Chitikila, C.2
Mitra, M.3
Pugh, B.F.4
-
26
-
-
0030590260
-
How proteins recognize the TATA box
-
Juo, Z. S., T. K. Chiu, P. M. Leiberman, I. Baikalov, A. J. Berk, and R. E. Dickerson. 1996. How proteins recognize the TATA box. J. Mol. Biol. 261:239-254.
-
(1996)
J. Mol. Biol.
, vol.261
, pp. 239-254
-
-
Juo, Z.S.1
Chiu, T.K.2
Leiberman, P.M.3
Baikalov, I.4
Berk, A.J.5
Dickerson, R.E.6
-
27
-
-
0027483012
-
Co-crystal structure of TBP recognizing the minor groove of a TATA element
-
Kim, J. L., D. B. Nikolov, and S. K. Burley. 1993. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 365:520-527.
-
(1993)
Nature
, vol.365
, pp. 520-527
-
-
Kim, J.L.1
Nikolov, D.B.2
Burley, S.K.3
-
28
-
-
0031883573
-
The yeast TAF145 inhibitory domain and TFIIA competitively bind to TATA-binding protein
-
Kokubo, T., M. J. Swanson, J. I. Nishikawa, A. G. Hinnebusch, and Y. Nakatani. 1998. The yeast TAF145 inhibitory domain and TFIIA competitively bind to TATA-binding protein. Mol. Cell. Biol. 18:1003-1012.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 1003-1012
-
-
Kokubo, T.1
Swanson, M.J.2
Nishikawa, J.I.3
Hinnebusch, A.G.4
Nakatani, Y.5
-
29
-
-
0028355555
-
Interaction between the N-terminal domain of the 230-kDa subunit and the TATA box-binding subunit of TFIID negatively regulates TATAbox binding
-
Kokubo, T., S. Yamashita, M. Horikoshi, R. G. Roeder, and Y. Nakatani. 1994. Interaction between the N-terminal domain of the 230-kDa subunit and the TATA box-binding subunit of TFIID negatively regulates TATAbox binding. Proc. Natl. Acad. Sci. USA 91:3520-3524.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 3520-3524
-
-
Kokubo, T.1
Yamashita, S.2
Horikoshi, M.3
Roeder, R.G.4
Nakatani, Y.5
-
30
-
-
0027340219
-
Characterisation of the gene encoding an unusually divergent TATA-binding protein (TBP) from the extremely A+T-rich human malaria parasite Plasmodium falciparum
-
McAndrew, M. B., M. Read, P. F. Sims, and J. E. Hyde. 1993. Characterisation of the gene encoding an unusually divergent TATA-binding protein (TBP) from the extremely A+T-rich human malaria parasite Plasmodium falciparum. Gene 124:165-171.
-
(1993)
Gene
, vol.124
, pp. 165-171
-
-
McAndrew, M.B.1
Read, M.2
Sims, P.F.3
Hyde, J.E.4
-
31
-
-
0028978670
-
Crystal structure of a TFIIB-TBPTATA-element ternary complex
-
Nikolov, D. B., H. Chen, E. D. Halay, A. A. Usheva, K. Hisatake, D. K. Lee, R. G. Roeder, and S. K. Burley. 1995. Crystal structure of a TFIIB-TBPTATA-element ternary complex. Nature 377:119-128.
-
(1995)
Nature
, vol.377
, pp. 119-128
-
-
Nikolov, D.B.1
Chen, H.2
Halay, E.D.3
Usheva, A.A.4
Hisatake, K.5
Lee, D.K.6
Roeder, R.G.7
Burley, S.K.8
-
32
-
-
0026491908
-
Crystal structure of TFIID TATA-box binding protein
-
Nikolov, D. B., S. H. Hu, J. Lin, A. Gasch, A. Hoffmann, M. Horikoshi, N. H. Chua, R. G. Roeder, and S. K. Burley. 1992. Crystal structure of TFIID TATA-box binding protein. Nature 360:40-46.
-
(1992)
Nature
, vol.360
, pp. 40-46
-
-
Nikolov, D.B.1
Hu, S.H.2
Lin, J.3
Gasch, A.4
Hoffmann, A.5
Horikoshi, M.6
Chua, N.H.7
Roeder, R.G.8
Burley, S.K.9
-
33
-
-
0029846871
-
The general transcription factors of RNA polymerase II
-
Orphanides, G., T. Lagrange, and D. Reinberg. 1996. The general transcription factors of RNA polymerase II. Genes Dev. 10:2657-2683.
-
(1996)
Genes Dev.
, vol.10
, pp. 2657-2683
-
-
Orphanides, G.1
Lagrange, T.2
Reinberg, D.3
-
34
-
-
0033603388
-
Intermediate species possessing bent DNA are present along the pathway to formation of a final TBP-TATA complex
-
Parkhurst, K. M., R. M. Richards, M. Brenowitz, and L. J. Parkhurst. 1999. Intermediate species possessing bent DNA are present along the pathway to formation of a final TBP-TATA complex. J. Mol. Biol. 289:1327-1341.
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 1327-1341
-
-
Parkhurst, K.M.1
Richards, R.M.2
Brenowitz, M.3
Parkhurst, L.J.4
-
35
-
-
0033573008
-
TATA element recognition by the TATA box-binding protein has been conserved throughout evolution
-
Patikoglou, G. A., J. L. Kim, L. Sun, S. H. Yang, T. Kodadek, and S. K. Burley. 1999. TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes Dev. 13:3217-3230.
-
(1999)
Genes Dev.
, vol.13
, pp. 3217-3230
-
-
Patikoglou, G.A.1
Kim, J.L.2
Sun, L.3
Yang, S.H.4
Kodadek, T.5
Burley, S.K.6
-
36
-
-
0029008807
-
Yeast TATA binding protein interaction with DNA: Fluorescence determination of oligomeric state, equilibrium binding, on-rate, and dissociation kinetics
-
Perez-Howard, G. M., P. A. Weil, and J. M. Beechem. 1995. Yeast TATA binding protein interaction with DNA: Fluorescence determination of oligomeric state, equilibrium binding, on-rate, and dissociation kinetics. Biochemistry 34:8005-8017.
-
(1995)
Biochemistry
, vol.34
, pp. 8005-8017
-
-
Perez-Howard, G.M.1
Weil, P.A.2
Beechem, J.M.3
-
37
-
-
0029080688
-
Thermodynamic and kinetic characterization of the binding of the TATA binding protein to the adenovirus E4 promoter
-
Petri, V., M. Hsieh, and M. Brenowitz. 1995. Thermodynamic and kinetic characterization of the binding of the TATA binding protein to the adenovirus E4 promoter. Biochemistry 34:9977-9984.
-
(1995)
Biochemistry
, vol.34
, pp. 9977-9984
-
-
Petri, V.1
Hsieh, M.2
Brenowitz, M.3
-
38
-
-
0026559077
-
The yeast SUA7 gene encodes a homolog of human transcription factor TFIIB and is required for normal start site selection in vivo
-
Pinto, I., D. E. Ware, and M. Hampsey. 1992. The yeast SUA7 gene encodes a homolog of human transcription factor TFIIB and is required for normal start site selection in vivo. Cell 68:977-988.
-
(1992)
Cell
, vol.68
, pp. 977-988
-
-
Pinto, I.1
Ware, D.E.2
Hampsey, M.3
-
39
-
-
0028019848
-
Characterization of sua7 mutations defines a domain of TFIIB involved in transcription start site selection in yeast
-
Pinto, I., W. H. Wu, J. G. Na, and M. Hampsey. 1994. Characterization of sua7 mutations defines a domain of TFIIB involved in transcription start site selection in yeast. J. Biol. Chem. 269:30569-30573.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 30569-30573
-
-
Pinto, I.1
Wu, W.H.2
Na, J.G.3
Hampsey, M.4
-
40
-
-
0032900980
-
Intermediates in formation and activity of the RNA polymerase II preinitiation complex: Holoenzyme recruitment and a postrecruitment role for the TATA box and TFIIB
-
Ranish, J. A., N. Yudkovsky, and S. Hahn. 1999. Intermediates in formation and activity of the RNA polymerase II preinitiation complex: Holoenzyme recruitment and a postrecruitment role for the TATA box and TFIIB. Genes Dev. 13:49-63.
-
(1999)
Genes Dev.
, vol.13
, pp. 49-63
-
-
Ranish, J.A.1
Yudkovsky, N.2
Hahn, S.3
-
41
-
-
0024669291
-
A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
-
Sikorski, R. S., and P. Hieter. 1989. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122:19-27.
-
(1989)
Genetics
, vol.122
, pp. 19-27
-
-
Sikorski, R.S.1
Hieter, P.2
-
42
-
-
0029127570
-
DNA bending is an important component of site-specific recognition by the TATA binding protein
-
Starr, D. B., B. C. Hoopes, and D. K. Hawley. 1995. DNA bending is an important component of site-specific recognition by the TATA binding protein. J. Mol. Biol. 250:434-446.
-
(1995)
J. Mol. Biol.
, vol.250
, pp. 434-446
-
-
Starr, D.B.1
Hoopes, B.C.2
Hawley, D.K.3
-
43
-
-
0029896209
-
Dimerization of TFIID when not bound to DNA
-
Taggart, A. K., and B. F. Pugh. 1996. Dimerization of TFIID when not bound to DNA. Science 272:1331-1333.
-
(1996)
Science
, vol.272
, pp. 1331-1333
-
-
Taggart, A.K.1
Pugh, B.F.2
-
44
-
-
0029870514
-
Crystal structure of a yeast TFIIA/TBP/DNA complex
-
Tan, S., Y. Hunziker, D. F. Sargent, and T. J. Richmond. 1996. Crystal structure of a yeast TFIIA/TBP/DNA complex. Nature 381:127-151.
-
(1996)
Nature
, vol.381
, pp. 127-151
-
-
Tan, S.1
Hunziker, Y.2
Sargent, D.F.3
Richmond, T.J.4
-
45
-
-
0037040419
-
A regulated two-step mechanism of TBP binding to DNA: A solvent-exposed surface of TBP inhibits TATA box recognition
-
Zhao, X., and W. Herr. 2002. A regulated two-step mechanism of TBP binding to DNA: A solvent-exposed surface of TBP inhibits TATA box recognition. Cell 108:615-627.
-
(2002)
Cell
, vol.108
, pp. 615-627
-
-
Zhao, X.1
Herr, W.2
-
46
-
-
0030050454
-
The N-terminal domain of TFIIB from Pyrococcus furiosus forms a zinc ribbon
-
Zhu, W., Q. Zeng, C. M. Colangelo, M. Lewis, M. F. Summers, and R. A. Scott. 1996. The N-terminal domain of TFIIB from Pyrococcus furiosus forms a zinc ribbon. Nat. Struct. Biol. 3:122-124.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 122-124
-
-
Zhu, W.1
Zeng, Q.2
Colangelo, C.M.3
Lewis, M.4
Summers, M.F.5
Scott, R.A.6
|