Primary structure and complementarity-determining region (CDR) 3 spectratyping of rainbow trout TCRβ transcripts identify ten Vβ families with Vβ6 displaying unusual CDR2 and differently spliced forms

Journal of Immunology

Volumn 169, Issue 11, 2002, Pages 6244-6252

  Boudinot, Pierre ^a   Boubekeur, Samira ^a,b   Benmansour, Abdenour ^a  

^a INRA Institut National de la Recherche Agronomique   (France)

^b INSTITUT COCHIN   (France)

Author keywords

[No Author keywords available]

Indexed keywords

RECEPTOR SUBUNIT; T LYMPHOCYTE RECEPTOR; T LYMPHOCYTE RECEPTOR BETA CHAIN; T LYMPHOCYTE RECEPTOR V BETA 6; UNCLASSIFIED DRUG; COMPLEMENTARY DNA; LYMPHOCYTE ANTIGEN RECEPTOR;

AMINO ACID SEQUENCE; ARTICLE; COMPLEMENTARITY DETERMINING REGION; COMPLEMENTARITY DETERMINING REGION 2; COMPLEMENTARITY DETERMINING REGION 3; CONTROLLED STUDY; FISH; GENE AMPLIFICATION; MAJOR HISTOCOMPATIBILITY COMPLEX; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FAMILY; RAINBOW TROUT; RHABDOVIRUS; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS; VIRAL HEMORRHAGIC SEPTICEMIA VIRUS; ALTERNATIVE RNA SPLICING; ANIMAL; ANIMAL DISEASE; CHEMISTRY; FISH DISEASE; GENE REARRANGEMENT; GENETIC VARIABILITY; GENETICS; IMMUNOLOGY; MOLECULAR GENETICS; MULTIGENE FAMILY; SEQUENCE HOMOLOGY; T LYMPHOCYTE RECEPTOR GENE; VIROLOGY; VIRUS INFECTION;

ALTERNATIVE SPLICING; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; COMPLEMENTARITY DETERMINING REGIONS; DNA, COMPLEMENTARY; FISH DISEASES; GENE REARRANGEMENT, BETA-CHAIN T-CELL ANTIGEN RECEPTOR; GENES, T-CELL RECEPTOR BETA; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; NOVIRHABDOVIRUS; ONCORHYNCHUS MYKISS; RECEPTORS, ANTIGEN, T-CELL, ALPHA-BETA; RHABDOVIRIDAE INFECTIONS; SEQUENCE HOMOLOGY, AMINO ACID; VARIATION (GENETICS);

EID: 0036884412     PISSN: 00221767     EISSN: None     Source Type: Journal    
DOI: 10.4049/jimmunol.169.11.6244     Document Type: Article

References (37)

1. Davis, M. M., and Y. H. Chien. 1999. T-cell antigen receptors. In Fundamental Immunology. W. Paul, ed. Lippincott-Raven, Philadelphia. p. 341.
2. Du Pasquier, L., and M. Flajnik. 1999. Evolution of the vertebrate immune system. In Fundamental Immunology. W. Paul, ed. Lippincott-Raven, Philadelphia, p. 605.
3. Partula, S., J. S. Fellah, A. de Guerra, and J. Charlemagne. 1994. Characterization of cDNA of T-cell receptor β chain in rainbow trout. C. R. Acad. Sci. Ser. III 317:765.
4. Rast, J. P., and G. W. Litman. 1994. T-cell receptor gene homologs are present in the most primitive jawed vertebrates. Proc. Natl. Acad. Sci. USA 91:9248.
5. Rast, J. P., M. K. Anderson, S. J. Strong, C. Luer, R. T. Litman, and G. W. Litman. 1997. α, β, γ, and δ T cell antigen receptor genes arose early in vertebrate phylogeny. Immunity. 6: I.
6. Hordvik, I., A. L. Jacob, J. Charlemagne, and C. Endresen. 1996. Cloning of T-cell antigen receptor β chain cDNAs from Atlantic salmon (Salmo salar). Immunogenetics 45:9.
7. Wilson, M. R., H. Zhou, E. Bengten, L. W. Clem, T. B. Stuge, G. W. Warr, and N. W. Miller. 1998. T-cell receptors in channel catfish: structure and expression of TCR α and β genes. Mol. Immunol. 35:545.
8. Wermenstam, N. E., and L. Pilstrom. 2001. T-cell antigen receptors in Atlantic cod (Gadus morhua l.): structure, organization and expression of TCR α and β genes. Dev. Comp. Immunol. 25:117.
9. Partula, S., A. de Guerra, J. S. Fellah, and J. Charlemagne. 1995. Structure and diversity of the T cell antigen receptor β-chain in a teleost fish. J. Immunol. 155:699.
10. De Guerra, A., and J. Charlemagne. 1997. Genomic organization of the TCR β-chain diversity (Dβ) and joining (Jβ) segments in the rainbow trout: presence of many repeated sequences. Mol. Immunol. 34:653.
11. Williams, A. F., and A. N. Barclay. 1988. The immunoglobulin superfamily: domains for cell surface recognition. Annu. Rev. Immunol. 6:381.
12. Charlemagne, J., J. S. Fellah, A. De Guerra, F. Kerfourn, and S. Partula. 1998. T-cell receptors in ectothermic vertebrates. Immunol. Rev. 166:87.
13. Wilson, R. K., E. Lai, P. Concannon, R. K. Barth, and L. E. Hood. 1988. Structure, organization and polymorphism of murine and human T-cell receptor α and β chain gene families. Immunol. Rev. 101:149.
14. Tanaka, A., N. Ishiguro, and M. Shinagawa. 1990. Sequence and diversity of bovine T-cell receptor β-chain genes. Immunogenetics 32:263.
15. McConnell, T. J., U. B. Godwin, and B. J. Cuthbertson. 1998. Expressed major histocompatibility complex class II loci in fishes. Immunol. Rev. 166:294.
16. Hansen, J. D., P. Strassburger, G. H. Thorgaard, W. P. Young, and L. Du Pasquier. 1999. Expression, linkage, and polymorphism of MHC-related genes in rainbow trout, Oncorhynchus mykiss. J. Immunol. 163:774.
17. Shum, B. P., L. Guethlein, L. R. Flodin, M. A. Adkison, R. P. Hedrick, R. B. Nehring, R. J. Stet, C. Secombes, and P. Parham. 2001. Modes of salmonid MHC class I and II evolution differ from the primate paradigm. J. Immunol. 166:3297.
18. Miller, N. W., A. Deuter, and L. W. Clem. 1986. Phylogeny of lymphocyte heterogeneity: the cellular requirements for the mixed leukocyte reaction with channel catfish. Immunology 59:123.
19. Stuge, T. B., M. R. Wilson, H. Zhou, K. S. Barker, E. Bengten, G. Chinchar, N. W. Miller, and L. W. Clem. 2000. Development and analysis of various clonal alloantigen-dependent cytotoxic cell lines from channel catfish. J. Immunol. 164:2971.
20. Somamoto, T., T. Nakanishi, and N. Okamoto. 2000. Specific cell-mediated cytotoxicity against a virus-infected syngeneic cell line in isogeneic ginbuna crucian carp. Dev. Comp. Immunol. 24:633.
21. Pannetier, C., J. Even, and P. Kourilsky. 1995. T-cell repertoire diversity and clonal expansions in normal and clinical samples. Immunol. Today 16:176.
22. Boudinot, P., S. Boubekeur, and A. Benmansour. 2001. Rhabdovirus infection induces public and private T cell responses in teleost fish. J. Immunol. 167:6202.
23. Pannetier, C., M. Cochet, S. Darche, A. Casrouge, M. Zoller, and P. Kourilsky. 1993. The sizes of the CDR3 hypervariable regions of the murine T-cell receptor β chains vary as a function of the recombined germ-line segments. Proc. Natl. Acad. Sci. USA 90:4319.
24. Collette, A., and A. Six. 2002. ISEApeaks: an Excel platform for GeneScan and Immunoscope data retrieval, management and analysis. Bioinformatics 18:329.
25. Chothia, C., D. R. Boswell, and A. M. Lesk. 1988. The outline structure of the T-cell αβ receptor. EMBO J. 7: 3745.
26. Greenberg, A. S., A. L. Hughes, J. Guo, D. Avila, E. C. McKinney, and M. F. Flajnik. 1996. A novel "chimeric" antibody class in cartilaginous fish: IgM may not be the primordial immunoglobulin. Eur. J. Immunol. 26:1123.
27. Diaz, M., A. S. Greenberg, and M. F. Flajnik. 1998. Somatic hypermutation of the new antigen receptor gene (NAR) in the nurse shark does not generate the repertoire: possible role in antigen-driven reactions in the absence of germinal centers. Proc. Natl. Acad. Sci. USA 95:14343.
28. Roux, K. H., A. S. Greenberg, L. Greene, L. Strelets, D. Avila, E. C. McKinney, and M. F. Flajnik. 1998. Structural analysis of the nurse shark (new) antigen receptor (NAR): molecular convergence of NAR and unusual mammalian immunoglobulins. Proc. Natl. Acad. Sci. USA 95:11804.
29. Fellah, J. S., F. Kerfourn, and J. Charlemagne. 1994. Evolution of T cell receptor genes: extensive diversity of Vβ families in the Mexican axolotl. J. Immunol. 153:4539.
30. Chretien, I., A. Marcuz, J. Fellah, J. Charlemagne, and L. Du Pasquier. 1997. The T cell receptor β genes of Xenopus. Eur. J. Immunol. 27:763.
31. Marche, P. N., and T. J. Kindt. 1986. Two distinct T-cell receptor α-chain transcripts in a rabbit T-cell line: implications for allelic exclusion in T cells. Proc. Natl. Acad. Sci. USA 83:2190.
32. Al-Lazikani, B., A. M. Lesk, and C. Chothia. 2000. Canonical structures for the hypervariable regions of T cell αβ receptors. J. Mol. Biol. 295:979.
33. Garboczi, D. N., P. Ghosh, U. Utz, Q. R. Fan, W. E. Biddison, and D. C. Wiley. 1996. Structure of the complex between human T-cell receptor, viral peptide and HLA-A2. Nature 384:134.
34. Garcia, K. C., M. Degano, R. L. Stanfield, A. Brunmark, M. R. Jackson, P. A. Peterson, L. Teyton, and I. A. Wilson. 1996. An αβ T cell receptor structure at 2.5 A and its orientation in the TCR-MHC complex. Science 274:209.
35. Reinherz, E. L., K. Tan, L. Tang, P. Kern, J. Liu, Y. Xiong, R. E. Hussey, A. Smolyar, B. Hare, R. Zhang, et al. 1999. The crystal structure of a T cell receptor in complex with peptide and MHC class II. Science 286:1913.
36. 2-microglobulin sequence diversity in individual rainbow trout. Proc. Natl. Acad. Sci. USA 93:2779.
37. Neville, M. J., and R. D. Campbell. 1999. A new member of the Ig superfamily and a V-ATPase G subunit are among the predicted products of novel genes close to the TNF locus in the human MHC. J. Immunol. 162:4745.