메뉴 건너뛰기




Volumn 13, Issue 6, 2002, Pages 1266-1273

Bis-pyrene-labeled oligonucleotides: Sequence specificity of excimer and monomer fluorescence changes upon hybridization with DNA

Author keywords

[No Author keywords available]

Indexed keywords

DNA; FLUORESCENCE; MONOMERS; OLIGONUCLEOTIDES; PROBES; SPECTROSCOPIC ANALYSIS;

EID: 0036861482     PISSN: 10431802     EISSN: None     Source Type: Journal    
DOI: 10.1021/bc025530u     Document Type: Article
Times cited : (119)

References (34)
  • 1
    • 0025923402 scopus 로고
    • Fluorescent-labeled oligonucleotide probes: Detection of hybrid formation in solution by fluorescence polarization spectroscopy
    • Murakami, A., Nakamura, M., Nakatsuji, Y., Nagahara, S., Tran-Cong, Q., and Makino, K. (1991) Fluorescent-labeled oligonucleotide probes: Detection of hybrid formation in solution by fluorescence polarization spectroscopy. Nucleic Acids Res. 19, 4097-4102.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 4097-4102
    • Murakami, A.1    Nakamura, M.2    Nakatsuji, Y.3    Nagahara, S.4    Tran-Cong, Q.5    Makino, K.6
  • 2
    • 0007945472 scopus 로고
    • Sequence specific molecular light switch: Tethering of an oligonucleotide to a dipyridophenazine complex of ruthenium(II)
    • Jenkins, Y., and Barton, J. (1992) Sequence specific molecular light switch: tethering of an oligonucleotide to a dipyridophenazine complex of ruthenium(II). J. Am. Chem. Soc. 114, 8736-8738.
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 8736-8738
    • Jenkins, Y.1    Barton, J.2
  • 3
    • 0030471925 scopus 로고    scopus 로고
    • Fluorescence detection of specific sequence of nucleic acids by oxazole yellow-linked oligonucleotides. Homogeneous quantitative monitoring of in vitro transcription
    • Ishigro, T., Saitoh, J., Yawata, H., Ohtsuka, M., Inoue, T., and Sugiura, Y. (1996) Fluorescence detection of specific sequence of nucleic acids by oxazole yellow-linked oligonucleotides. Homogeneous quantitative monitoring of in vitro transcription. Nucleic Acids Res. 24, 4992-4997.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4992-4997
    • Ishigro, T.1    Saitoh, J.2    Yawata, H.3    Ohtsuka, M.4    Inoue, T.5    Sugiura, Y.6
  • 4
    • 0031585066 scopus 로고    scopus 로고
    • Synthesis, binding, and fluorescence properties of oligonucleotide derivatives having a dansyl fluorescence label attached to the 2′-position of a ribonucleoside
    • Yamana, K., Ohashi, Y., Nunota, K., and Nakano, H. (1997) Synthesis, binding, and fluorescence properties of oligonucleotide derivatives having a dansyl fluorescence label attached to the 2′-position of a ribonucleoside. Tetrahedron 53, 4265-4270.
    • (1997) Tetrahedron , vol.53 , pp. 4265-4270
    • Yamana, K.1    Ohashi, Y.2    Nunota, K.3    Nakano, H.4
  • 5
    • 0033764715 scopus 로고    scopus 로고
    • Wavelength-shifting molecular beacons
    • Tyagi, S., Marras, S. A. E., and Kramer, F. (2000) Wavelength-shifting molecular beacons. Nature Biotechnol. 18, 1191-1196.
    • (2000) Nature Biotechnol. , vol.18 , pp. 1191-1196
    • Tyagi, S.1    Marras, S.A.E.2    Kramer, F.3
  • 6
    • 0032549128 scopus 로고    scopus 로고
    • Molecular beacons: Spectral genotyping human alleles
    • Kostriks, L. G., Tyagi, S., Mhlanda, M. M., Ho, D. D., and Kramer,F. (1998) Molecular beacons: Spectral genotyping human alleles. Science 279, 1228-1229.
    • (1998) Science , vol.279 , pp. 1228-1229
    • Kostriks, L.G.1    Tyagi, S.2    Mhlanda, M.M.3    Ho, D.D.4    Kramer, F.5
  • 7
    • 0029670262 scopus 로고    scopus 로고
    • Molecular beacons: Probes that fluorescence upon hybridization
    • Tyagi, S., and Kramer, F. (1996) Molecular beacons: Probes that fluorescence upon hybridization. Nature Biotechnol. 14, 303-307.
    • (1996) Nature Biotechnol. , vol.14 , pp. 303-307
    • Tyagi, S.1    Kramer, F.2
  • 8
    • 0035910542 scopus 로고    scopus 로고
    • Design of a molecular beacon DNA probe with two fluorophores
    • Zang, P., Beck, T., Tan, W. (2001) Design of a molecular beacon DNA probe with two fluorophores. Angew. Chem., Int. Ed. Engl. 40, 402-405.
    • (2001) Angew. Chem., Int. Ed. Engl. , vol.40 , pp. 402-405
    • Zang, P.1    Beck, T.2    Tan, W.3
  • 10
    • 0028559132 scopus 로고
    • Fluorescence energy transfer between two triple helix-forming oligonucleotides bound to duplex DNA
    • Mergny, J. L., Grrestier, T., Rougee, M., Alexandre, A. V., Chassignol, M., Thoung, N. T., and Helene, C. (1994) Fluorescence energy transfer between two triple helix-forming oligonucleotides bound to duplex DNA. Biochemistry 33, 15321-15328.
    • (1994) Biochemistry , vol.33 , pp. 15321-15328
    • Mergny, J.L.1    Grrestier, T.2    Rougee, M.3    Alexandre, A.V.4    Chassignol, M.5    Thoung, N.T.6    Helene, C.7
  • 11
    • 0030754954 scopus 로고    scopus 로고
    • Template-directed dye-terminator incorporation (TDI) assay: A homogeneous DNA diagnostic method based on fluorescence resonance energy transfer
    • Chen, X., and Kwok, P. Y. (1997) Template-directed dye-terminator incorporation (TDI) assay: A homogeneous DNA diagnostic method based on fluorescence resonance energy transfer. Nucleic Acids. Res. 25, 347-353.
    • (1997) Nucleic Acids. Res. , vol.25 , pp. 347-353
    • Chen, X.1    Kwok, P.Y.2
  • 12
    • 0032004371 scopus 로고    scopus 로고
    • Determination of interactions between structured nucleic acids by fluorescence resonance energy transfer (FRET): Selection of target sites for functional nucleic acids
    • Ota, N., Hirano, K., Warashina, N., Andrus, A., Mullah, B., Hatanaka, K., and Taira, K. (1998) Determination of interactions between structured nucleic acids by fluorescence resonance energy transfer (FRET): Selection of target sites for functional nucleic acids. Nucleic Acids Res. 26, 735-743.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 735-743
    • Ota, N.1    Hirano, K.2    Warashina, N.3    Andrus, A.4    Mullah, B.5    Hatanaka, K.6    Taira, K.7
  • 13
    • 0034672142 scopus 로고    scopus 로고
    • Double-labeled donor probe can enhance the signal of fluorescence resonance energy transfer (FRET) in detection of nucleic acid hybridization
    • Okamura, Y., Kondo, S., Sase, I., Suga, T., Mise, K., Furusawa, I., Kawakami, S., and Watanabe, Y (2000) Double-labeled donor probe can enhance the signal of fluorescence resonance energy transfer (FRET) in detection of nucleic acid hybridization. Nucleic Acids. Res. 28, e107.
    • (2000) Nucleic Acids. Res. , vol.28
    • Okamura, Y.1    Kondo, S.2    Sase, I.3    Suga, T.4    Mise, K.5    Furusawa, I.6    Kawakami, S.7    Watanabe, Y.8
  • 14
    • 0034658851 scopus 로고    scopus 로고
    • Real-time monitoring of in vitro transcriptional RNA synthesis using fluorescence resonance energy transfer
    • Sei-Iida, Y., Koshimoto, H., Kondo, S and Tsuji, A. (2000) Real-time monitoring of in vitro transcriptional RNA synthesis using fluorescence resonance energy transfer. Nucleic Acids. Res. 28, e59.
    • (2000) Nucleic Acids. Res. , vol.28
    • Sei-Iida, Y.1    Koshimoto, H.2    Kondo, S.3    Tsuji, A.4
  • 15
    • 0034654675 scopus 로고    scopus 로고
    • Fluorescence resonance energy transfer from pyrene to perylene labels for nucleic acid hybridization assays under homogeneous solution conditions
    • Masuko, M., Ohuchi, O., Sode, K., Ohtani, H., and Shimadzu, A. (2000) Fluorescence resonance energy transfer from pyrene to perylene labels for nucleic acid hybridization assays under homogeneous solution conditions. Nucleic Acids. Res. 28, e34.
    • (2000) Nucleic Acids. Res. , vol.28
    • Masuko, M.1    Ohuchi, O.2    Sode, K.3    Ohtani, H.4    Shimadzu, A.5
  • 16
    • 0022292337 scopus 로고
    • Synthesis and properties of oligonucleotides bearing a pendant pyrene group
    • Yamana, K., and Letsinger, R. L. (1985) Synthesis and properties of oligonucleotides bearing a pendant pyrene group. Nucleic Acids Res. Symp. Ser. 16, 169-172.
    • (1985) Nucleic Acids Res. Symp. Ser. , vol.16 , pp. 169-172
    • Yamana, K.1    Letsinger, R.L.2
  • 17
    • 0024462352 scopus 로고
    • DNA duplexes covalently labeled at two sites: Synthesis and characterization by steady-state and time-resolved optical spectroscopies
    • Telser, J., Cruickshank, K. A., Morrison, L. E., Netzel, T. L., and Chan, C. (1989) DNA duplexes covalently labeled at two sites: Synthesis and characterization by steady-state and time-resolved optical spectroscopies. J. Am. Chem. Soc. 111, 7226-7231.
    • (1989) J. Am. Chem. Soc. , vol.111 , pp. 7226-7231
    • Telser, J.1    Cruickshank, K.A.2    Morrison, L.E.3    Netzel, T.L.4    Chan, C.5
  • 19
    • 0026577427 scopus 로고
    • Enhanced fluorescence in the binding of oligonucleotides with a pyrene group in the sugar fragment to complementary polynucleotides
    • Yamana, K., Gokota, T., Ozaki, H., Nakno, H., Sangen, O., and Shimidzu, T. (1992) Enhanced fluorescence in the binding of oligonucleotides with a pyrene group in the sugar fragment to complementary polynucleotides. Nucleosides Nucleotides 11, 386-390.
    • (1992) Nucleosides Nucleotides , vol.11 , pp. 386-390
    • Yamana, K.1    Gokota, T.2    Ozaki, H.3    Nakno, H.4    Sangen, O.5    Shimidzu, T.6
  • 20
    • 0001313197 scopus 로고
    • 5′-Amino pyrene provides a sensitive, nonperturbing fluorescent probe of RNA secondary and tertiary structure formation
    • Kierzek, R., Li, Y., Turner, D., and Bevilacqua, P. C. (1993) 5′-Amino pyrene provides a sensitive, nonperturbing fluorescent probe of RNA secondary and tertiary structure formation. J. Am. Chem. Soc. 115, 4985-4992.
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 4985-4992
    • Kierzek, R.1    Li, Y.2    Turner, D.3    Bevilacqua, P.C.4
  • 21
    • 0031314317 scopus 로고    scopus 로고
    • Homopyrimidine oligonucleotides modified by a pyrenylmthyl group at the terminal position: Enhanced fluorescence upon binding to double helical DNA
    • Yamana, K., Kumamoto, S., and Nakano, H. (1997) Homopyrimidine oligonucleotides modified by a pyrenylmthyl group at the terminal position: Enhanced fluorescence upon binding to double helical DNA. Chem. Lett. 1173-1174.
    • (1997) Chem. Lett. , pp. 1173-1174
    • Yamana, K.1    Kumamoto, S.2    Nakano, H.3
  • 22
  • 23
    • 0035857567 scopus 로고    scopus 로고
    • Fluorescence detection of specific RNA sequences using 2′-pyrene modified oligoribonucleotides
    • Yamana, K., Zako, H., Asazuma, K., Iwase, R., Nakano, H., and Murakami, A. (2001) Fluorescence detection of specific RNA sequences using 2′-pyrene modified oligoribonucleotides. Angew. Chem., Int. Ed. Engl. 40, 1104-1107.
    • (2001) Angew. Chem., Int. Ed. Engl. , vol.40 , pp. 1104-1107
    • Yamana, K.1    Zako, H.2    Asazuma, K.3    Iwase, R.4    Nakano, H.5    Murakami, A.6
  • 24
    • 0026365671 scopus 로고
    • Oligonucleotides with bis-pyrene adduct in the backbone: Synthesis and properties of intramolecular excimer forming probe
    • Kitamura, M., Nimura, A., Yamana, K., and Shimidzu, T. (1991) Oligonucleotides with bis-pyrene adduct in the backbone: Synthesis and properties of intramolecular excimer forming probe. Nucleic Acids Res. Symp. Ser. 25, 67-71.
    • (1991) Nucleic Acids Res. Symp. Ser. , vol.25 , pp. 67-71
    • Kitamura, M.1    Nimura, A.2    Yamana, K.3    Shimidzu, T.4
  • 25
    • 0028314898 scopus 로고
    • A new method for introduction of a pyrene group into a terminal position of an oligonucleotide
    • Yamana, K., Nunota, K., Nakano, H., and Sangen, O. (1994) A new method for introduction of a pyrene group into a terminal position of an oligonucleotide. Tetrahedron Lett. 35, 2555-2559.
    • (1994) Tetrahedron Lett. , vol.35 , pp. 2555-2559
    • Yamana, K.1    Nunota, K.2    Nakano, H.3    Sangen, O.4
  • 26
    • 0030738043 scopus 로고    scopus 로고
    • Synthesis of oligonucleotide derivatives containing pyrene labeled glycerol linkers: Enhanced excimer fluorescence on binding to a complementary DNA sequence
    • Yamana, K., Takei, M., and Nakano, H. (1997) Synthesis of oligonucleotide derivatives containing pyrene labeled glycerol linkers: Enhanced excimer fluorescence on binding to a complementary DNA sequence. Tetrahedron Lett. 38, 6051-6055.
    • (1997) Tetrahedron Lett. , vol.38 , pp. 6051-6055
    • Yamana, K.1    Takei, M.2    Nakano, H.3
  • 27
    • 0030855861 scopus 로고    scopus 로고
    • Bispyrenyl excimer fluorescence: A sensitive oligonucleotide probe
    • Lews, F. D., Zhang, Y., and Letsinger, R. L. (1997) Bispyrenyl excimer fluorescence: A sensitive oligonucleotide probe. J. Am. Chem. Soc. 119, 5451-5452.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 5451-5452
    • Lews, F.D.1    Zhang, Y.2    Letsinger, R.L.3
  • 28
    • 0032529292 scopus 로고    scopus 로고
    • Probing DNA sequences in solution with a monomer - Excimer fluorescence color change
    • Paris, P. L., Langenhan, J. M., and Kool, E. T. (1998) Probing DNA sequences in solution with a monomer - Excimer fluorescence color change. Nucleic Acids Res. 26, 3789-3793.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 3789-3793
    • Paris, P.L.1    Langenhan, J.M.2    Kool, E.T.3
  • 29
    • 0032401933 scopus 로고    scopus 로고
    • Optimization of excimer-forming two-probe nucleic acid hybridization method with pyrene as a fluorophore
    • Masuko, M., Ohtani, H., Ebata, K., and Shimadzu, A. (1998) Optimization of excimer-forming two-probe nucleic acid hybridization method with pyrene as a fluorophore. Nucleic Acids Res. 26, 5409-5416.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 5409-5416
    • Masuko, M.1    Ohtani, H.2    Ebata, K.3    Shimadzu, A.4
  • 30
    • 0030293027 scopus 로고    scopus 로고
    • Incorporation of two anthraquinonylmethyl groups into the 2′-O-positions of oligonucleotides: Increased affinity and sequence specificity of anthraquinone-modified oligonucleotides in hybrid formation with DNA and RNA
    • Yamana, K., Mitsui, T., Yoshioka, J., Isuno, T., and Nakano, H. (1996) Incorporation of two anthraquinonylmethyl groups into the 2′-O-positions of oligonucleotides: Increased affinity and sequence specificity of anthraquinone-modified oligonucleotides in hybrid formation with DNA and RNA. Bioconjugate Chem. 7, 715-720.
    • (1996) Bioconjugate Chem. , vol.7 , pp. 715-720
    • Yamana, K.1    Mitsui, T.2    Yoshioka, J.3    Isuno, T.4    Nakano, H.5
  • 32
    • 0024987443 scopus 로고
    • Biotinyl and phosphotyrosinyl phosphoramidite derivatives useful in the incorporation of multiple reporter groups on synthetic oligonucleotides
    • Misiura, K., Durrant, I., Evans, M. R., and Gait, M. J. (1990) Biotinyl and phosphotyrosinyl phosphoramidite derivatives useful in the incorporation of multiple reporter groups on synthetic oligonucleotides. Nucleic Acids. Res. 18, 4345-4354.
    • (1990) Nucleic Acids. Res. , vol.18 , pp. 4345-4354
    • Misiura, K.1    Durrant, I.2    Evans, M.R.3    Gait, M.J.4
  • 33
    • 0027053634 scopus 로고
    • Oligonucleotide labeling methods. 3. Direct labeling of oligonucleotides employing a novel, non-nucleosidic, 2-aminobutyl-1, 3- propanediol backbone
    • Nelson, P. S., Kent, M., and Muthini, S. (1992) Oligonucleotide labeling methods. 3. Direct labeling of oligonucleotides employing a novel, non-nucleosidic, 2-aminobutyl-1, 3- propanediol backbone. Nucleic Acids Res. 20, 6253-6259.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 6253-6259
    • Nelson, P.S.1    Kent, M.2    Muthini, S.3
  • 34
    • 0034661709 scopus 로고    scopus 로고
    • Oligodeoxynucleotides containing conformationally constrained abasic sites: A UV and fluorescence spectroscopic investigation on duplex stability and structure
    • Pompizi, I., Herli, A., and Leumann, C. J. (2000) Oligodeoxynucleotides containing conformationally constrained abasic sites: A UV and fluorescence spectroscopic investigation on duplex stability and structure. Nucleic Acids Res. 28, 2702-2708.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 2702-2708
    • Pompizi, I.1    Herli, A.2    Leumann, C.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.