The proline-rich, extensin-like receptor kinase-1 (PERK1) gene is rapidly induced by wounding

Plant Molecular Biology

Volumn 50, Issue 4-5, 2002, Pages 667-685

  Silva, Nancy F ^a,b   Goring, Daphne R ^a  

^a UNIVERSITY OF TORONTO   (Canada)

^b YORK UNIVERSITY   (Canada)

Author keywords

Extensins; Fungal pathogen; Receptor like protein kinases; Wounding

Indexed keywords

AMINO ACIDS; CATALYSIS; ENZYMES; PLANTS (BOTANY); RNA; TISSUE;

PLASMA MEMBRANES;

GENES;

AMINO ACID SEQUENCE; ASCOMYCOTA; BLOTTING, SOUTHERN; BRASSICA NAPUS; DNA, COMPLEMENTARY; DNA, PLANT; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; GREEN FLUORESCENT PROTEINS; LUMINESCENT PROTEINS; MOLECULAR SEQUENCE DATA; ONIONS; PHOSPHORYLATION; PHYLOGENY; PLANT PROTEINS; PROLINE; PROTEIN-SERINE-THREONINE KINASES; RECOMBINANT FUSION PROTEINS; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA; STRESS, MECHANICAL;

ALLIUM CEPA; ARABIDOPSIS; BRASSICA; BRASSICA NAPUS; EMBRYOPHYTA; SCLEROTINIA; SCLEROTINIA SCLEROTIORUM;

EID: 0036836925     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1019951120788     Document Type: Article

References (86)

1. Arabidopsis Genome Initiative 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
2. Becraft, P.W., Stinard, P.S. and McCarty, D.R. 1996. CRINKLY4: a TNFR-like receptor kinase involved in maize epidermal differentiation. Science 273: 1406-1409.
3. Bischoff, F., Vahlkamp, L., Molendijk, A. and Palme K. 2000. Localization of AtROP4 and AtROP6 and interaction with the guanine nucleotide dissociation inhibitor AtRhoGDI1 from Arabidopsis. Plant Mol. Biol. 42: 515-530.
4. Bögre, L., Ligterink, W., Heberle-Bors, E., Hirt, H. 1996. Mechanosensors in plants. Nature 383: 489-490.
5. Bögre, L., Ligterrink, W., Meskiene, I., Barker, P.J., HeberieBors, E., Huskisson, N.S. and Hirt, H. 1997. Wounding induces the rapid and transient activation of a specific MAP kinase pathway. Plant Cell 9: 75-83.
6. Bowles, K.J. 1990. Defense-related proteins in higher plants. Annu. Rev. Biochem. 59: 873-907.
7. Boyle, W.J., van der Geer, P. and Hunter, T. 1991. Phosphopeptide mapping and phosphoamino acid analysis by two-dimensional separation on thin-layer cellulose plates. Meth. Enzymol. 201: 110-149.
8. Braam, J. and Davis, R.W. 1990. Rain-, wind- and touch-induced expression of calmodulin and calmodulin-related genes in Arabidopsis. Cell 60: 357-364.
9. Braam, J., Sistrunk, M.L., Polisensky, D.H., Xu, W., Purugganan, M.M., Antosiewicz, D.M., Campbell, P. and Johnson, K.A. 1997. Plant responses to environmental stress: regulation and functions of the Arabidopsis TCH genes. Planta 203: S35-S41.
10. Braun, D.M. and Walker, J.C. 1996. Plant transmembrane receptors: new pieces in the signalling puzzle. Trends Biochem. Sci. 21: 70-73.
11. Cassab, G.I. 1998. Plant cell wall proteins. Annu. Rev. Plant. Physiol. Plant Mol. Biol. 49: 281-309.
12. Cessna, S.G., Sears, V.E., Dickman, M.B. and Low, P.S. 2000. Oxalic acid, a pathogenicity factor for Sclerotinia sclerotiorum, suppresses the oxidative burst of the host plant. Plant Cell 12: 2191-2199.
13. Chuck, G., Lincoln, C. and Hake S. 1996. KNAT1 induces lobed leaves with ectopic meristems when overexpressed in Arabidopsis. Plant Cell 8: 1277-1289.
14. Clark, S., Williams, R.W. and Meyerowitz, E.M. 1997. The CLAVATA1 gene encodes a putative receptor-kinase that controls shoot and floral meristem size in Arabidopsis. Cell 89: 575-585.
15. Cock, J.M., Swarup, R. and Dumas, C. 1997. Natural antisense transcripts of the S locus receptor kinase gene and related sequences in Brasscia oleracea. Mol. Gen. Genet. 255: 514-524.
16. Dwyer, K.G., Kandasamy, M.K., Mahosky, D.I., Acciai, J., Kudish, B.I., Miller, J.E., Nasrallah, M.E. and Nasrallah, J.B. 1994. A superfamily of S locus-related sequences in Arabidopsis: diverse structures and expression patterns. Plant Cell 6: 1829-1843.
17. Dyer, J.M. and Mullen, R.T. 2001. Immunocytological localization of two plant fatty acid desaturases in the endoplasmic reticulum. FEBS Lett. 247: 1-4.
18. Feinberg, A.P. and Vogelstein, B. 1983. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132: 6-13.
19. Fraissinet-Tachet, L. and Fevre, M. 1996. Regulation of galacturonic acid and pectinolytic enzyme production by Sclerotinia sclerotiorum. Curr. Microbiol. 33: 49-53.
20. Friedrichsen, D.M., Joazeiro C.A.P., Li, J., Hunter T. and Chory J. 2000. Brassinosteroid-Insensitive-1 is a ubiquitously expressed leucine-rich receptor serine/threonine kinase. Plant Physiol. 123: 1247-1255.
21. Gasser, C.S., Gunnin, D.A., Budelier, K.A. and Brown, S.M. 1990. Structure and expression of cytosolic cyclophilin peptidyl-proyl-cis-trans isomerase of higher plants and the production of active tomato cyclophilin in Escherichia coli. Proc. Natl. Acad. Sci. USA 87: 9519-9523.
22. Goring, D.R. and Rothstein, S.J. 1992. The S-locus receptor kinase gene in a self-incompatible Brassica napus line encodes a functional serine/threonine kinase. Plant Cell 4: 1273-1281.
23. Hanks, S.K. and Quinn, A.M. 1991. Protein kinase catalytic domain sequence database: identification of conserved features of 1° structure and classification of family members. Meth. Enzymol. 200: 38-62.
24. He, Z.H., Fujuki, M. and Kohorn, B.D. 1996. A cell wall-associated, receptor-like kinase. J. Biol. Chem. 271: 19789-19793.
25. He, Z.H., He, D. and Kohorn, B.D. 1998. Requirement for the induced expression of a cell wall-associated receptor kinase for survival during the pathogen response. Plant J. 14: 55-63.
26. He, Z.H., Cheeseman, I., He, D. and Kohorn, B.D. 1999. A cluster of five cell wall-associated receptor kinase genes, Wak1-5, are expressed in specific organs of Arabidopsis. Plant Mol. Biol. 39: 1189-1196.
27. Hervé, C., Dabos, P., Galaud, J.P., Rougé, P. and Lescure, B. 1996. Characterization of an Arabidopsis thaliana gene that defines a new class of putative plant receptor kinases with an extracellular lectin-like domain. J. Mol. Biol. 258: 778-788.
28. Hildmann, T., Ebneth, M., Peña-Cortés, H., Sánchez-Serrano, J.J., Willmitzer, L. and Prat, S. 1992. General roles for abscisic acid and jasmonic acid in gene activation as a result of mechanical damage Plant Cell 4: 1157-1170.
29. Hirt, H. 2000. MAP kinases in plant signal transduction. In: H. Hirt (Ed.), MAP Kinases in Plant Signal Transduction: Results, Problems and Cell Differences, Springer-Verlag, Heidelberg, Germany, pp. 1-9.
30. Ichimura, K., Mizoguchi, T., Yoshida, R., Yuasa, T. and Shinozaki, K. 2000a. Various abiotic stresses rapidly activate Arabidopsis MAP kinases ATMPK4 and ATMPK6. Plant J. 24: 655-665.
31. Ichimura, K., Mizoguchi T., Yoshida, T., Yuasa, T. and Shinozaki, K. 2000b. Protein phosphorylation and dephosphorylation in environmental stress responses in plants. In: J. Callow (Ed.) Plant Protein Kinases: Advances in Botanical Research, Academic Press, San Diego, CA, pp. 355-370.
32. Jinn, T.L., Stone, J.M. and Walker, J.C. 2000. HAESA, an Arabidopsis leucine-rich repeat receptor kinase, controls floral organ abscission, Genes Dev. 14: 108-117.
33. Jonak, C., Beisteiner, D., Beyerly, J., and Hirt, H. 2000. Wound-induced expression and activation of WIG, a novel glycogen synthase kinase 3. Plant Cell 12: 1467-1475.
34. Jones, J.D.G., Dunsmuir, P. and Bedbrook, J. 1985. High level expression of introduced chimeric genes in regenerated transformed plants. EMBO J. 4: 2411-2418.
35. Kim, H.S., Hartman, G.L., Manandhar, J.B., Graef, G.L., Steadman, J.R., and Diers, B.W. 2000. Reaction of soybean cultivars to Sclerotinia stem rot in filed, greenhouse, and laboratory examinations. Crop Sci. 40: 665-669.
36. Kohorn, B.D., Lane, S. and Smith, T.A. 1992. An Arabidopsis serine/threonine kinase homologue with an epidermal growth factor repeat selected in yeast for its specificity for a thylakoid membrane protein. Proc. Natl. Acad. Sci. USA 89: 10989-10992.
37. Kudla, J., Xu, Q., Harter, K., Gruissem, W. and Luan, S. 1999. Genes for calcineurin B-like proteins in Arabidopsis are differentially regulated by stress signals. Proc. Natl. Acad. Sci. USA. 96: 4718-4723.
38. Kyte, J. and Doolittle, R.F. 1982. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157: 105-132.
39. Lally, D., Ingmire, P., Tong, H.Y. and He Z.H. 2001. Antisense expression of a cell wall-associated protein kinase, WAK4, inhibits cell elongation and alters morphology. Plant Cell 13: 1317-1331.
40. Lease, K., Ingham, E. and Walker, J.C. 1998. Challenges in understanding RLK function. Curr. Opin. Plant Biol. 1: 388-392.
41. Lee, J.K., Suh, M.C., Kim, S., Kwon, J.K., Kim, M., Paek, K.H., Choi, D. and Lom B.D. 2001. Molecular cloning of a novel pathogen-inducible cDNA encoding a putative acyl-CoA synthetase from Capsicum annuum L. Plant Mol. Biol. 46: 661-671.
42. Léon, J., Rojo E. and Sánchez-Serrano, J. 2001. Wound signaling in plants. J. Exp. Bot. 52: 1-9.
43. Li, J. and Chroy, J. 1997. A putative leucine rich repeat receptor kinase involved in brassinosteroid signal transduction. Cell 90: 929-938.
44. Lippuner, V., Chou, I.T., Scott, S.V., Ettinger, W.F., Theg, S.M. and Gasser, C.S. 1994. Cloning and characterization of chloroplast and cytosolic forms of cyclophilin from Arabidopsis thaliana. J. Biol. Chem. 269: 7863-7868.
45. Liu, Y., Zhang, S. and Klessig, D.F. 2000. Molecular cloning and characterization of a tobacco MAP kinase kinase that interacts with SIPK. Mol. Plant-Microbe Interact. 13: 118-124.
46. Lutcke, H.A., Chow, K.C., Mickel, F.S., Moss, K.A., Kern, H.F. and Scheele, G.A. 1987. Selection of AUG initiation codons differs in plants and animals. EMBO J. 6: 43-48.
47. McCarty, D.R. and Chory, J. 2000. Conservation and innovation in plant signalling pathways. Cell 103: 201-209.
48. Mekhedov, S., De Ilárduya, O.M. and Ohlrogge, J. 2000. Toward a functional catalog of the plant genome. A survey of genes for lipid biosynthesis. Plant Physiol. 122: 389-401.
49. Memelink, J., Swords, K.M.M., de Kam, R.J., Schilperoort, R.A., Hoge, J.H.C. and Staehelin, L.A. 1993 Structure and regulation of tobacco extensin. Plant J. 4: 1011-1022.
50. Merkouropoulos, G., Barnett, D.C. and Shirsat, A.H. 1999 The Arabidopsis extensin gene is developmentally regulated, is induced by wounding, methyl jasmonate, abscisic acid and salicylic acid, and codes for a protein with unusual motifs. Planta 208: 212-219.
51. Mizoguchi, T., Irie, K., Hirayama, T., Hayashida, N., Yamaguchi-Shinozaki, K., Matsumoto, K. and Shinozaki, K. 1996. A gene encoding a mitogen-activated protein kinase kinase kinase is induced simultaneously with genes for a mitogen-activated protein kinase and an S6 ribosomal protein kinase by touch, cold, and water stress in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 93: 765-769.
52. Pastuglia, M., Roby, D., Dumas, C. and Cock, M. 1997. Rapid induction by wounding and bacterial infection of an S gene family receptor-like kinase gene in Brassica oleracea. Plant Cell 9: 49-60.
53. Rodríguez-Concepción, M., Alicia Pérez-García, A. and Béltrán J.P. 2001. Up-regulation of genes encoding novel extracellular proteins during fruit set in pea. Plant Mol. Biol. 46: 373-382.
54. Saitou, N. and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
55. Sanger, F., Nicklen, S. and Coulson, A.R. 1977. DNA sequencing with chain terminating inhibitors. Proc. Natl. Acad. Sci. USA 74: 5463-5467.
56. Sauer, N., Corbin, D.R., Keller, B. and Lamb, C.J. 1990. Cloning and characterization of a wound specific hydroxyproline-rich glycoprotein in Phaseolus vulgaris. Plant Cell Environ. 13: 257-266.
57. Seo, S., Okamoto, M., Seto, H., Ishizuka, K., Sano, H. and Ohashi, Y. 1995. Tobacco MAP kinase: a possible mediator in wound signal transduction pathways. Science 270: 1988-1992.
58. Shirsat, A.H., Wieczoreky, D. and Kozibal, P. 1996. A gene for Brassica napus extensin is differentially expressed on wounding. Plant Mol. Biol. 30: 1291-1300.
59. Shiu, S.H. and Bleecker, A.B. 2001. Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proc. Natl. Acad. Sci. USA 98: 10763-10768.
60. Showalter, A.M. 1993. Structure and function of plant cell wall proteins. Plant Cell 5: 9-23.
61. Showalter, A.M., Butt, A.D. and Kim, S. 1992. Molecular details of tomato extensin and glycine rich protein gene expression. Plant Mol. Biol. 19: 205-215.
62. Singer, S.J. 1990. The structure and insertion of integral proteins in the membrane. Annu. Rev. Cell Biol. 6: 247-296.
63. Silva, N.F., Stone, S.L., Christie, L.N., Sulaman, W., Nazarian, K.A., Burnett, L.A., Arnoldo, M.A., Rothstein, S.J. and Goring, D.R. 2001. Expression of the S receptor kinase in self-compatible Brassica napus cv. Westar leads to the allele-specific rejection of self-incompatible Brassica napus pollen. Mol. Genet. Genomics 265: 552-559.
64. Sommerville, C.R. and Ogren, W.L. 1982. Isolation of photorespiration mutants in Arabidopsis thaliana. In: M. Edelman, R.B. Hallick and N.H. Chua (Eds) Methods of Chloroplast Biology, Elsevier Biomedical Press, Amsterdam, pp. 129-138.
65. Song, W.Y., Wang, G.L., Chen, L., Kim, H.S., Pi, L.Y., Gardner, J., Wang, B., Holsten, T., Zhai, W.X., Zhu, L.H., Fauquet, C. and Ronald, P.C. 1995. A receptor kinase-like protein encoded by the rice disease resistance gene Xa21. Science 270: 1804-1806.
66. Stein, J.C., Howlett, B., Boyes, D.C., Nasrallah, M.E. and Nasrallah, J.B. 1991. Molecular cloning of a putative receptor protein kinase gene encoded at the self-incompatibility locus of Brassica oleracea. Proc. Natl. Acad. Sci. USA 88: 8816-8820.
67. Stone, J.M. and Walker, J.C. 1995. Plant protein kinase families and signal transduction. Plant Physiol. 108: 451-457.
68. Swarup, R., Dumas, D. and Cock, J.M. 1996. A new class of receptor-like protein kinase gene from Arabidopsis thaliana possessing a domain with similarity of plant lectin genes. Plant Physiol. 111: 347.
69. Takasaki, T., Hatakeyama, K., Suzuki, G., Watanabe, M., Isogai, A. and Hinata, K. 2000. The S receptor kinase determines self-incompatibility in Brassica stigma. Nature 403: 913-916.
70. Thompson, J.D., Higgins, D.G. and Gibson, T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22: 4673-4680.
71. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. and Higgins, D.G. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 24: 4876-4882.
72. Tiré, C., De Rycke, R., De Loose, M., Inzé, D., Van Montagu, M. and Engler, G. 1994. Extensin gene expression is induced by mechanical stimuli leading to local cell wall strengthening in Nicotania plumbaginifolia. Planta 195: 175-181.
73. Tobias, C.M. and Nasrallah, J.B. 1996. An S-locus-related gene in Arabidopsis encodes a functional kinase and produces two classes of transcripts. Plant J. 10: 523-531.
74. Tobias, C.M., Howlett, B. and Nasrallah, J.B. 1992. An Arabidopsis thaliana gene with sequence similarity to the S-locus receptor kinase of Brassica oleracea. Plant Physiol. 99: 284-290.
75. Torii, K.U., Mitsukawa, N., Oosumi, T., Matsuura, Y., Yokoyama, R., Whittier, R.F. and Komeda, Y. 1996. The Arabidopsis ERECTA gene encodes a putative receptor protein kinase with extracellular leucine-rich repeats. Plant Cell 8: 735-746.
76. Trotochaud, A.E., Jeong, S. and Clark, S.E. 2000. CLAVATA3, a multimeric ligand for the CLAVATA1 receptor-kinase. Science 289: 613-617.
77. Wagner, T.A. and Kohorn, B.D. 2001. Wall-associated kinases are expressed throughout plant development and are required for cell expansion. Plant Cell 13: 303-318.
78. Walker, J.C. 1994. Structure and function of the receptor-like protein kinases of higher plants. Plant Mol. Biol. 26: 1599-1609.
79. Walker, J.C. and Zhang, R. 1990. Relationship of a putative receptor protein kinase from maize to the S-locus glycoproteins of Brassica. Nature 345: 743-746.
80. Wang, X., Zafian, P., Choudhary, M. and Lawton, M. 1996. The PR5K receptor protein kinase from Arabidopsis thaliana is structurally related to a family of plant defense proteins. Proc. Natl. Acad. Sci. USA 93: 2598-2602.
81. Weinstein, J.N., Blumenthal, R., Van Renwoude, J., Kempf, C. and Mauser, R.O. 1982. Charge clusters and the orientation of membrane proteins. J. Membr. Biol. 66: 203-212.
82. Wilson, L.G. and Fry, J.L. 1986. Extensins: a major cell wall glycoprotein. Plant Cell Environ. 9: 239-260.
83. Yamamoto, Y.Y., Matsui, M. and Deng, X.W. 1998. Positive feedback in plant signalling pathways. Trend Plant Sci. 3: 374-375.
84. Yang, Y., Shah, J. and Klessig, D.F. 1997. Signal perception and transduction in plant defense responses. Genes Dev. 11: 1621-1639.
85. Zhang, S. and Klessig, D.F. 1998. The tobacco wounding-activated mitogen-activated protein kinase is encoded by SIPK. Proc. Natl. Acad. Sci. USA 95: 7225-7230.
86. Zhao, Y., Feng, X.H., Watson, J.C., Bottino, P.J. and Kung, S.D. 1994. Molecular cloning and biochemical characterization of a receptor-like serine/threonine kinase from rice. Plant Mol. Biol. 26: 791-803.