메뉴 건너뛰기




Volumn 28, Issue 2, 1999, Pages 131-139

Biomonitoring complex microbial communities using random amplified polymorphic DNA and principal component analysis

Author keywords

Biomonitoring; Genetic fingerprint; Microbial community; Principal component analysis; Random amplified polymorphic DNA

Indexed keywords

BACTERIAL DNA;

EID: 0033040633     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-6496(98)00098-1     Document Type: Article
Times cited : (38)

References (26)
  • 1
    • 0025366456 scopus 로고
    • 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward, D.M., Weller, R. and Bateson, M.M. (1990) 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345, 63-65.
    • (1990) Nature , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 2
    • 0028343555 scopus 로고
    • Remarkable archaeal diversity detected in a Yellow-stone National Park hot spring environment
    • Barns, S.M., Fundyga, R.E., Jeffries, M.W. and Pace, N.R. (1994) Remarkable archaeal diversity detected in a Yellow-stone National Park hot spring environment. Proc. Natl. Acad. Sci. USA 91, 1609-1613.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1609-1613
    • Barns, S.M.1    Fundyga, R.E.2    Jeffries, M.W.3    Pace, N.R.4
  • 4
    • 0003039149 scopus 로고
    • Diversity of microbial communities
    • (Marshall, K.C. Ed.), Plenum Press, New York
    • Atlas, R.M. (1984) Diversity of microbial communities. In: Advances in Microbial Ecology (Marshall, K.C. Ed.), Plenum Press, New York, pp. 1-47.
    • (1984) Advances in Microbial Ecology , pp. 1-47
    • Atlas, R.M.1
  • 5
    • 7344222611 scopus 로고
    • Measurement of numbers, biomass and activities in microbial ecosystems
    • Benjamin/Cummings, Menlo Park, CA
    • Atlas, R.M. and Bartha, R. (1987) Measurement of numbers, biomass and activities in microbial ecosystems. In: Microbial Ecology, 2nd edn., pp. 195-232. Benjamin/Cummings, Menlo Park, CA.
    • (1987) Microbial Ecology, 2nd Edn. , pp. 195-232
    • Atlas, R.M.1    Bartha, R.2
  • 6
    • 0030958150 scopus 로고    scopus 로고
    • Genetic diversity through the looking glass: Effect of enrichment bias
    • Dunbar, J., White, S. and Forney, L. (1997) Genetic diversity through the looking glass: effect of enrichment bias. Appl. Environ. Microbiol. 63, 1326-1331.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1326-1331
    • Dunbar, J.1    White, S.2    Forney, L.3
  • 7
    • 0030615690 scopus 로고    scopus 로고
    • Effects of recreational impacts on soil microbial communities
    • Zabinski, C.A. and Gannon, J.E. (1997) Effects of recreational impacts on soil microbial communities. Environ. Manage. 21, 233-238.
    • (1997) Environ. Manage. , vol.21 , pp. 233-238
    • Zabinski, C.A.1    Gannon, J.E.2
  • 9
    • 0031239470 scopus 로고    scopus 로고
    • Development of a physiological approach to measuring the catabolic diversity of soil microbial communities
    • Degens, B.P. and Harris, J.A. (1997) Development of a physiological approach to measuring the catabolic diversity of soil microbial communities. Soil Biol. Biochem. 29, 1309-1320.
    • (1997) Soil Biol. Biochem. , vol.29 , pp. 1309-1320
    • Degens, B.P.1    Harris, J.A.2
  • 10
    • 0030497909 scopus 로고    scopus 로고
    • Quantitative comparisons of in situ microbial biodiversity by signature biomarker analysis
    • White, D.C., Stair, J.O. and Ringelberg, D.B. (1996) Quantitative comparisons of in situ microbial biodiversity by signature biomarker analysis. J. Ind. Microbiol. 17, 185-196.
    • (1996) J. Ind. Microbiol. , vol.17 , pp. 185-196
    • White, D.C.1    Stair, J.O.2    Ringelberg, D.B.3
  • 11
    • 0030738777 scopus 로고    scopus 로고
    • A molecular comparison of culturable aerobic heterotrophic bacteria and 16S rDNA clones derived from a deep subsurface sediment
    • Chandler, D.P., Li, S.-M., Spadoni, CM., Drake, G.R., Balkwill, D.L., Fredrickson, J.K. and Brockman, F.J. (1997) A molecular comparison of culturable aerobic heterotrophic bacteria and 16S rDNA clones derived from a deep subsurface sediment. FEMS Microbiol. Ecol. 23, 131-144.
    • (1997) FEMS Microbiol. Ecol. , vol.23 , pp. 131-144
    • Chandler, D.P.1    Li, S.-M.2    Spadoni, C.M.3    Drake, G.R.4    Balkwill, D.L.5    Fredrickson, J.K.6    Brockman, F.J.7
  • 12
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu, W.-T., Marsh, T.L., Cheng, H. and Forney, L.J. (1997) Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63, 4516-4522.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4516-4522
    • Liu, W.-T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 13
    • 0002912874 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis and temperature gradient gel electrophoresis for studying soil microbial communities
    • (van Elsas, J.D., Trevors, J.T. and Wellington, E.M.H., Eds.), Marcel Dekker, New York
    • Heuer, H. and Smalla, K. (1997) Application of denaturing gradient gel electrophoresis and temperature gradient gel electrophoresis for studying soil microbial communities. In: Modern Soil Microbiology (van Elsas, J.D., Trevors, J.T. and Wellington, E.M.H., Eds.), Marcel Dekker, New York.
    • (1997) Modern Soil Microbiology
    • Heuer, H.1    Smalla, K.2
  • 15
    • 0026619002 scopus 로고
    • Primer-template interactions during DNA amplification fingerprinting with single arbitrary oligonucleotides
    • Caetano-Anolle's, G., Bassam, B.J. and Gresshoff, P.M. (1992) Primer-template interactions during DNA amplification fingerprinting with single arbitrary oligonucleotides. Mol. Gen. Genet. 235, 157-165.
    • (1992) Mol. Gen. Genet. , vol.235 , pp. 157-165
    • Caetano-Anolle's, G.1    Bassam, B.J.2    Gresshoff, P.M.3
  • 17
    • 0028314370 scopus 로고
    • DNA fingerprinting of medically important microorganisms by use of PCR
    • van Belkum, A. (1994) DNA fingerprinting of medically important microorganisms by use of PCR. Clin. Microbiol. Rev. 7, 174-184.
    • (1994) Clin. Microbiol. Rev. , vol.7 , pp. 174-184
    • Van Belkum, A.1
  • 18
    • 0344400797 scopus 로고
    • Factorial design and analysis
    • John Wiley and Sons, Chichester
    • Morgan, E. (1991) Factorial design and analysis. In: Chemometrics: Experimental Design. John Wiley and Sons, Chichester.
    • (1991) Chemometrics: Experimental Design
    • Morgan, E.1
  • 19
    • 0030579516 scopus 로고    scopus 로고
    • DNA recovery and PCR quantification of catechol 2,3-dioxygenase genes from different soil types
    • Wikström, P., Wiklund, A., Andersson, A.-C. and Forsman, M. (1996) DNA recovery and PCR quantification of catechol 2,3-dioxygenase genes from different soil types. J. Biotechnol. 52, 107-120.
    • (1996) J. Biotechnol. , vol.52 , pp. 107-120
    • Wikström, P.1    Wiklund, A.2    Andersson, A.-C.3    Forsman, M.4
  • 21
    • 0017669601 scopus 로고
    • Use of aurintricarboxylic acid as an inhibitor of nucleases during nucleic acid isolation
    • Hallick, R.B., Chelm, B.K., Gray, P.W. and Orozco Jr., E.M. (1977) Use of aurintricarboxylic acid as an inhibitor of nucleases during nucleic acid isolation. Nucleic Acids Res. 4, 3055-3064.
    • (1977) Nucleic Acids Res. , vol.4 , pp. 3055-3064
    • Hallick, R.B.1    Chelm, B.K.2    Gray, P.W.3    Orozco E.M., Jr.4
  • 22
    • 0030821846 scopus 로고    scopus 로고
    • Amplification of anonymous DNA fragments using pairs of long primers generates reproducible DNA fingerprints that are sensitive to genetic variation
    • Gillings, M. and Holley, M. (1997) Amplification of anonymous DNA fragments using pairs of long primers generates reproducible DNA fingerprints that are sensitive to genetic variation. Electrophoresis 18, 1512-1518.
    • (1997) Electrophoresis , vol.18 , pp. 1512-1518
    • Gillings, M.1    Holley, M.2
  • 23
    • 0029020740 scopus 로고
    • PCR bias in amplification of androgen receptor alleles, a trinucleotide marker used in clonality studies
    • Mutter, G.L. and Boynton, K.A. (1995) PCR bias in amplification of androgen receptor alleles, a trinucleotide marker used in clonality studies. Nucleic Acids Res. 23, 1411-1418.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 1411-1418
    • Mutter, G.L.1    Boynton, K.A.2
  • 24
    • 0025317419 scopus 로고
    • Characterization of polymerase chain reaction amplification of specific alleles
    • Sarkar, G., Cassady, J., Bottema, C.D.K. and Sommer, S.S. (1990) Characterization of polymerase chain reaction amplification of specific alleles. Anal. Biochem. 186, 64-68.
    • (1990) Anal. Biochem. , vol.186 , pp. 64-68
    • Sarkar, G.1    Cassady, J.2    Bottema, C.D.K.3    Sommer, S.S.4
  • 25
    • 0026865024 scopus 로고
    • Preferential PCR amplification of alleles: Mechanisms and solutions
    • Walsh, P.S., Erlich, H.A. and Higuchi, R. (1992) Preferential PCR amplification of alleles: mechanisms and solutions. PCR Methods Appl. 1, 241-250.
    • (1992) PCR Methods Appl. , vol.1 , pp. 241-250
    • Walsh, P.S.1    Erlich, H.A.2    Higuchi, R.3
  • 26
    • 0027996969 scopus 로고
    • The impact of the PCR plateau phase on quantitative PCR
    • Morrison, C. and Gannon, F. (1994) The impact of the PCR plateau phase on quantitative PCR. Biochim. Biophys. Acta 1219, 493-498.
    • (1994) Biochim. Biophys. Acta , vol.1219 , pp. 493-498
    • Morrison, C.1    Gannon, F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.