SHAM-sensitive alternative respiration in the xylose-metabolizing yeast Pichia stipitis

Yeast

Volumn 19, Issue 14, 2002, Pages 1203-1220

  Shi, Nian Qing ^a   Cruz, Jose ^b,c   Sherman, Fred ^d   Jeffries, Thomas W ^a,c  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b UNIVERSITY OF VIGO   (Spain)

^c FOREST PRODUCTS LABORATORY   (United States)

^d UNIVERSITY OF ROCHESTER SCHOOL OF MEDICINE AND DENTISTRY   (United States)

Author keywords

Alternative oxidase; Crabtree negative yeast; Pichia stipitis; SHAM sensitive respiration; Xylose conversion

Indexed keywords

ADENOSINE TRIPHOSPHATE; ALCOHOL; CYANIDE; CYTOCHROME B; CYTOCHROME C; CYTOCHROME C OXIDASE; CYTOCHROME C1; ISOPROTEIN; MITOCHONDRIAL ENZYME; MONOCLONAL ANTIBODY; OXIDOREDUCTASE; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATASE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE; SALICYLHYDROXAMIC ACID; XYLOSE;

ARTICLE; BACTERIAL GENOME; BACTERIAL GROWTH; BACTERIAL METABOLISM; CELL MUTANT; CONTROLLED STUDY; GENE DELETION; GENE DISRUPTION; GENE TARGETING; GENETIC CODE; HETEROLOGOUS EXPRESSION; MICROBIAL RESPIRATION; MOLECULAR CLONING; NONHUMAN; OXIDATION REDUCTION REACTION; OXYGEN CONSUMPTION; PICHIA STIPITIS; PRIORITY JOURNAL; WESTERN BLOTTING; WILD TYPE; YEAST CELL;

AMINO ACID SEQUENCE; BLOTTING, WESTERN; CLONING, MOLECULAR; ELECTRON TRANSPORT COMPLEX I; FUNGAL PROTEINS; GENE DELETION; GENES, FUNGAL; MOLECULAR SEQUENCE DATA; MUTATION; NADH, NADPH OXIDOREDUCTASES; OXYGEN CONSUMPTION; PICHIA; SACCHAROMYCES CEREVISIAE; SALICYLAMIDES; SEQUENCE ALIGNMENT; XYLOSE;

ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); PICHIA; PICHIA STIPITIS; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE; SAUROMATUM GUTTATUM; UNCULTURED ACTINOMYCETE;

EID: 0036799297     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/yea.915     Document Type: Article

References (67)

1. Affourtit C, Albury MS, Krab K, Moore AL. 1999. Functional expression of the plant alternative oxidase affects growth of the yeast Schizosaccharomyces pombe. J Biol Chem 274: 6212-6218.
2. Albury MS, Affourtit C, Moore AL. 1998. A highly conserved glutamate residue (Glu-270) is essential for plant alternative oxidase activity. J Biol Chem 273: 30301-30305.
3. Alexander MA, Jeffries TW. 1990. Respiratory efficiency and metabolite partitioning as regulatory phenomena in yeasts. Enzyme Microb Technol 12: 2-19.
4. Andersson ME, Nordlund P. 1999. A revised model of the active site of alternative oxidase. FEBS Lett 449: 17-22.
5. Berthold D. 1998. Isolation of mutants of the Arabidopsis thaliana alternative oxidase (ubiquinol:oxygen oxidoreductase) resistant to salicylhydroxamic acid. Biochim Biophys Acta 1364: 73-83.
6. Bonner WD Jr, Clark SD, Rich PR. 1986. Some characteristics of mitochondria extracted from higher plants. Plant Physiol 80: 838-842.
7. Bruinenberg PM, der Bot PHM, van Dijken JP, Scheffers WA. 1984. NADH-linked aldose reductase: a key to anaerobic alcoholic fermentation of xylose by yeasts. Appl Microbiol Biotechnol 19: 256-260.
8. Cho JY, Jeffries TW. 1999. Transcriptional control of ADH genes in the xylose-fermenting yeast, Pichia stipitis. Appl Environ Microbiol 65: 2363-2368.
9. Ciriacy M. 1975. Genetics of alcohol dehydrogenase in Saccharomyces cerevisiae. II. Two loci controlling synthesis of the glucose-repressible ADH II. Mol Gen Genet 138: 157-164.
10. Defontaine A, Lecocq FM, Hallet JN. 1990. A rapid miniprep method for the preparation of yeast mitochondrial DNA. Nucleic Acids Res 19: 185-190.
11. Delgenes JP, Moletta R, Navarro AM. 1986. The effect of aeration on D-xylose fermentation by Pachysolen tannophilus, Pichia stipitis, Kluyveromyces marxianus and Candida shehatae. Biotechnol Lett 8: 897-900.
12. Douce R, Neuburger M. 1989. The uniqueness of plant mitochondria. Ann Rev Plant Physiol Plant Mol Biol 40: 371-414.
13. Downie JA, Garland PB. 1973. An antimycin A- and cyanide-resistant variant of Candida utilis arising during copper-limited growth. Biochem J 134: 1051-1061.
14. Du Preez JC, van Driessel B, Prior BA. 1989. Effect of aerobiosis on fermentation and key enzyme levels during growth of Pichia stipitis, Candida shehatae and Candida tenuis on D-xylose. Arch Microbiol 152: 143-147.
15. Elthon ET, Nickels RL, McIntosh L. 1989. Monoclonal antibodies to the alternative oxidase of higher plant mitochondria. Plant Physiol 89: 1311-1317.
16. Gennis RB, Stewart V. 1996. In Escherichia coli and Salmonella: Cellular and Molecular Biology, Neidhardt FC (ed.). Washington, DC: ASM Press; 217-261.
17. Govinden R. 1995. Molecular and biochemical characterization of ethanoliC D-xylose fermenting Pichia stipitis, Candida shehatae and their fusants. MS Thesis, University of Durban-Westville, Durban, South Africa.
18. Henry MF, Hamaide-Deplus MC, Nyns EJ. 1974. Cyanide-sensitive respiration of Candida lipolytica. Antonie van Leeuwenhoek 40: 79-91.
19. Hickey DR, Jayaraman K, Goodhue CT, et al. 1991. Synthesis and expression of genes encoding tuna, pigeon, and horse cytochrome c in the yeast Saccharomyces cerevisiae. Gene 105: 73-81.
20. Horiuchi H, Sahikari T, Amachi T, Yoshizumi H, Takagi M, Yano K. 1990. High level secretion of a Rhizopus niveus aspartic proteinase in Saccharomyces cerevisiae. Agric Biol Chem 54: 1771-1779.
21. Huh W-K, Kang S-O. 1999. Molecular cloning and functional expression of alternative oxidase from Candida albicans. J Bacteriol 181: 4098-4102.
22. Huh W-K, Kang S-O. 2001. Characterization of the gene family encoding alternative oxidase from Candida albicans. Biochem J 356: 595-604.
23. Ito H, Fukuda Y, Murata K, Kimura A. 1983. Transformation of intact yeast cells treated with alkali cations. J. Bacteriol 153: 163-168.
24. Jeffries TW, Shi NQ. 1999. Genetic engineering for improved xylose fermentation in yeasts. Adv Biochem Engin Biotechnol 65: 117-161.
25. Jeppsson H, Alexander NJ, Hahn-Hägerdal B. 1995. Existence of cyanide-insensitive respiration in the yeast Pichia stipitis and its possible influence on product formation during xylose utilization. Appl Environ Microbiol 61: 2596-2600.
26. Joseph-Horne T, Hollomon DW, Wood PM. 2001. Fungal respiration: a fusion of standard and alternative components. Biochim Biophys Acta 1504: 179-195.
27. Keilin D. 1929. Cytochromes and respiratory enzymes. Proc R Soc B 104: 206-252.
28. Kimura M. 1983. The Neutral Theory of Molecular Evolution. Cambridge University Press: Cambridge.
29. Lambert H. 1982. Cyanide-resistant respiration: a non-phosphorylating electron transport pathway acting as an energy overflow. Physiol Plant 55: 478-485.
30. Lambowitz AM, Slayman CW. 1971. Cyanide-insensitive respiration in Neurospora carssa. J Bacteriol 108: 1087-1096.
31. Ligthelm ME. 1987. The role of oxygen in the fermentation of D-xylose to ethanol by yeasts. PhD Thesis, University of the Orange Free State, Bloemfontein, South Africa.
32. Lloyd D, Edwards SW. 1977. Electron transport pathways: alternative to the main phosphorylating respiratory chain. In 11th FEBS Meeting, Copenhagen: Functions of Alternative Terminal Oxidases, Degen H, Lloyd D, Hill GC (eds). 49: Pergamon: Oxford; 1-10.
33. Lu P, Davis BP, Hendrick J, Jeffries TW. 1998. Cloning and disruption of the β-isopropylmalate dehydrogenase gene (LEU2) of Pichia stipitis with URA3 and recovery of the double auxotroph. Appl Microbiol Biotechnol 49: 141-146.
34. Luttik MA, Overkamp KM, Kötter P, de Vries MS, van Dijken JP, Pronk JT. 1998. The Saccharomyces cerevisiae NDE1 and NDE2 genes encode separate mitochondrial NADH dehydrogenases catalyzing the oxidation of cytosolic NADH. J Biol Chem 273: 24529-24534.
35. Minagawa N, Sakajo S, Komiyama T, Yoshimoto A. 1990. Essential role of ferrous iron in cyanide-resistant respiration in Hansenula anomala. FEBS Lett 267: 114-116.
36. Moore AL, Rich PR. 1985. Organization of the respiratory chain and oxidative phophorylation. In Encyclopedia of Plant Physiology, vol. 18, Douce R, Mannella C, Bonner WD (eds). Springer-Verlag: Berlin; 134-172.
37. Moore AL, Umbach AL, Siedow JN. 1995a. The active site of the cyanide-resistant oxidase from plant mitochondrial contains a binuclear iron center. FEBS Lett 362: 10-14.
38. Moore AL, Umbach AL, Siedow JN. 1995b. Structure-function relationships of the alternative oxidase of plant mitochondria: a model of the active site. J Bioenerg Biomembr 27: 367-377.
39. Nakamura Y, Gojobori T, Ikemura T. 2000. Codon usage tabulated from international DNA sequence databases: status for the year 2000. Nucleic Acids Res 28: 292-300.
40. Nielsen H, Engelbrecht J, Brunak B, von Heijne G. 1997. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng 10: 1-6.
41. Ohnishi T. 1972. Factors controlling the occurrence of site I phosphorylation in Candida utilis mitochondria. FEBS Lett 24: 305-309.
42. Ohnishi T. 1973. Mechanism of electron transport and energy conservation in the site I region of the respiratory chain. Biochim Biophys Acta 301: 105-128.
43. Passoth V, Zimmermann M, Klinner U. 1996. Peculiarities of the regulation of fermentation and respiration in the Crabtree-negative, xylose-fermenting yeast Pichia stipitis. Appl Biochem Biotech 57/58: 201-212.
44. Poinsot C, Moulin G, Claisse ML, Galzy P. 1986. Isolation and characterization of a mutant of Schwanniomyces castelli with altered respiration. Antonie van Leeuwenhoek 53: 65-70.
45. Querol A, Barrio E. 1991. A rapid and simple method for the preparation of yeast mitochondrial DNA. Nucleic Acids Res 18: 1657-1660.
46. Rasmusson AG, Heiser V, Zabaleta E, Brennicke A, Grohmann L. 1998. Physiological, biochemical and molecular aspects of mitochondrial complex I in plants. Biochim Biophys Acta 1364: 101-111.
47. Rhoads DM, Umbach AL, Sweet CR, Lennon AM, Rauch GS, Siedow JN. 1998. Regulation of the cyanide-resistant alternative oxidase of plant mitochondria. Identification of the cysteine residue involved in alpha-keto acid stimulation and intersubunit disulfide bond formation. J Biol Chem 273: 30750-30756.
48. Sakajo S, Minagawa N, Yoshimoto A. 1993. Characterization of the alternative oxidase protein in the yeast Hansenula anomala. FEBS Lett 318: 310-312.
49. Sánchez O, Navarro RE, Aguirre J. 1998. Increased transformation frequency and tagging of developmental gene in Aspergillus nidulans by restriction enzyme-mediated integration (REMI). Appl Microbiol Biotechnol 258: 89-94.
50. Siedow JN. 1982. The nature of cyanide-resistant pathway in plant mitochondria. Rec Adv Phytochem 16: 47-84.
51. Siedow JN, Umbach AL. 2000. The mitochondrial cyanide-resistant oxidase: structural conservation amid regulatory diversity. Biochim Biophys Acta 1459: 432-439.
52. Sherman F, Stewart JW, Jackson M, Gilmore RA, Parker JH. 1974. Mutants of yeast defective in iso-1-cytochrome c. Genetics 77: 255-284.
53. Shi NQ. 2000. Dissecting the respiratory machinery in the xylose-metabolizing yeast, Pichia stipitis. PhD Thesis, University of Wisconsin, Madison, WI, USA.
54. Shi NQ, Jeffries TW. 1998. Anaerobic growth and improved fermentation of Pichia stipitis bearing a URA1 gene from Saccharomyces cerevisiae. Appl Microbiol Biotechnol 50: 339-345.
55. Shi NQ, Davis BP, Sherman F, Cruz J, Jeffries TW. 1999. Disruption of a cytochrome c gene in xylose-utilizing yeast Pichia stipitis leads to higher ethanol production. Yeast 15: 1021-1030.
56. Skoog K, Hahn-Hägerdal B. 1990. Effect of oxygenation on xylose fermentation by Pichia stipitis. Appl Environ Microbiol 56: 3389-3394.
57. Skoog K. 1992. The influence of oxygen in pentose fermentation by yeasts. PhD Thesis, University of Lund, Sweden.
58. Sreenath HK, Chapman TW, Jeffries TW. 1986. Ethanol production from D-xylose in batch fermentation with Candida shehatae: process variables. Appl Microbiol Biotechnol 24: 294-299.
59. Storey BT. 1976. Respiratory chain of plant mitochondria. XVIII. Point of interaction of the alternate oxidase with respiratory chain. Plant Physiol 58: 521-525.
60. Umbach AL, Siedow JN. 1996. The reaction of the soybean cotyledon mitochondrial cyanide-resistant oxidase with sulfhydryl reagents suggests that α-keto acid activation involves the formation of a thiohemiacetal. J Biol Chem 271: 25 019-25 026.
61. Umbach AL, Siedow JN. 2000. The cyanide-resistant alternative oxidases from the fungi Pichia stipitis and Neurospora crassa are monomeric and lack regulatory features of the plant enzyme. Arch Biochem Biophys 378: 234-245.
62. Vanlerberghe GC, McIntosh L. 1997. Alternative oxidase: from gene to function. Ann Rev Plant Physiol Plant Mol Biol 48: 703-734.
63. Veiga A, Arrabaça JD, Loureiro-Dias MC. 2000. Cyanide-resistant respiration is frequent, but confined to yeasts incapable of aerobic fermentation. FEMS Microbiol Lett 190: 93-97.
64. Viola AM, Bortesi B, Pizzigoni R, Puglisi P, Goffrini P, Ferrero I. 1986. The respiratory activities of four Hansenula species. Antonie van Leeuwenhoek 52: 285-308.
65. Wingender E, Chen X, Hehl R, et al. 2000. TRANSFAC: an integrated system for gene expression regulation. Nucleic Acids Res 28: 316-319.
66. Yang VW, Marks JA, Davis BP, Jeffries TW. 1994. High-efficiency transformation of Pichia stipitis based on its URA3 gene and a homologous autonomous replication sequence, ARS2. Appl Environ Microbiol 60: 4245-4254.
67. Yukioka H, Inagaki S, Tanaka R, et al. 1998. Transcriptional activation of the alternative oxidase gene of the fungi Magnaporthe grisea by a respiratory-inhibiting fungicide and hydrogen peroxide. Biochim Biophys Acta 1442: 161-169.