Molecular identification of evolutionarily significant units in the Amazon river dolphin Inia sp. (Cetacea: Iniidae)

Journal of Heredity

Volumn 93, Issue 5, 2002, Pages 312-322

  Banguera Hinestroza, E ^a   Cardenas H ^a   Ruiz García, Manuel ^b   Marmontel, M ^c   Gaitan E ^d   Vazquez R ^e   Garcia Vallejo F ^a  

^a UNIVERSIDAD DEL VALLE   (Colombia)

^b PONTIFICIA UNIVERSIDAD JAVERIANA   (Colombia)

^c Instituto de Desenvolvimento Sustentable Mamirauá   (Brazil)

^d INTERNATIONAL CENTER FOR TROPICAL AGRICULTURE CIAT   (Colombia)

^e Facultad de Ciencias Pecuarias   (Bolivia)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME B; DNA; DNA FRAGMENT; MITOCHONDRIAL DNA;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BOLIVIA; CETACEA; COLOMBIA; COMPARATIVE STUDY; CONTROLLED STUDY; DNA SEQUENCE; DOLPHIN; EVOLUTION; GENE AMPLIFICATION; GENETIC DISTANCE; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; HAPLOTYPE; MOLECULAR PHYLOGENY; MOLECULAR RECOGNITION; NEIGHBOR JOINING METHOD; NONHUMAN; NUCLEOTIDE SEQUENCE; PARSIMONY ANALYSIS; PRIORITY JOURNAL; RIVER BASIN; SOUTH AMERICA; SPECIES; STATISTICAL ANALYSIS;

ANIMALIA; CETACEA; INIA; INIA GEOFFRENSIS; INIIDAE; MAMMALIA;

EID: 0036766216     PISSN: 00221503     EISSN: None     Source Type: Journal    
DOI: 10.1093/jhered/93.5.312     Document Type: Article

References (63)

1. Avise JC, 1989. A role for molecular genetics in the recognition and conservation of endangered species. Trends Ecol Evol 4:279-281.
2. Baker CS, Perry A, Bannister JL, Weinrich MT, Abernethy RB, Calambokidis J, Lien J, Lambertsen RH, Urbán Ramírez J, Vasquez O, Clapham PJ, Ailing A, O'Brien SJ, and Palumbi SR, 1993. Abundant mitochondrial DNA variation and world-wide population structure in humpback whales. Proc Natl Acad Sci USA 90:8239-8243.
3. Barnes LG, 1985. Evolution, taxonomy and antitropical distribution of the porpoises (Phocoenidae, Mammalia). Mar Mamm Sci 1:149-165.
4. Best RC and da Silva V, 1983. Distribution of freshwater dolphins and manatees in the upper Rios Negro and Orinoco [abstract]. Presented at the 5th Biennial Conference on the Biology of Marine Mammals, Boston; 17-21.
5. Best RC and da Silva VMF, 1989a. Amazon river dolphin, Boto. Inia geoffrensis, de Blainville, 1817. In: Handbook of marine mammals. London: Academic Press; 1-23.
6. Best RC and da Silva VMF, 1989b. Biology, status and conservation of Inia geoffrensis in the Amazon and Orinoco river basins. Occasional paper SSC 3. Geneva, Switzerland: IUCN Species Survival Commission; 23-33.
7. Brown Gladden JG, Ferguson MM, and Clayton JW, 1997. Matriarchal genetic population structure of North American beluga whales Delphinapterus leucas (Cetacea: Monodontidae). Mol Ecol 6:1033-1046.
8. Brown Gladden JG, Ferguson MM, Friesen MK, and Clayton JW, 1999. Population structure of North American beluga whales (Delphinapterus leucas) based on nuclear DNA microsatellite variation and contrasted with the population structure revealed by mitochondrial DNA variation. Mol Ecol 8:347-363.
9. Casinos A and Ocaña J, 1979. A craniometrical study of the genus Inia D'Orbigny, 1834, Cetacea, Platanistoidea. Saugetierkunde Mitteilung 27:194-206.
10. Cozzuol MA, 1996. Contributions of southern South America to vertebrate paleontology. Munchber Geowissenschaftliche Abhandlungen 30:321-342.
11. Dalebout ML, Van Helden A, Van Waerebeek K, and Baker CS, 1998. Molecular genetic identification of southern hemisphere beaked whales, Cetacea:Ziphiidae. Mol Ecol 7:687-694.
12. da Silva V, 1994. Aspects of the biology of the Amazonian dolphin genus Inia and Sotalia fluviatilis (PhD dissertation). Cambridge: Cambridge University.
13. De Muizon CH, 1988. Les vértebrés fossiles de la Formation Pisco, Pérou. Troisième partie: les Odontocètes, Cetacea, Mammalia) du Miocène. Travaux Institut Francais D'Etudes Andines, Paris, Éditions Recherche sur les Civilisations, Memoire 78:1-244.
14. Dizon AE, Southern SO, and Perrin WF, 1991. Molecular analysis of mtDNA types in exploited populations of spinner dolphins Stenella longirostris. Final Report to the International Whaling Commission 3:83-202.
15. Dobzhansky TH, 1971. Evolutionary oscillations in Drosophila pseudoobscura. In: Ecological genetics and evolution. Oxford: Blackwell Scientific; 109-133.
16. Escorza-Treviño S and Dizon AE, 2000. Phylogeography, intraspecific structure and sex-biased dispersal of Dall's porpoise, Phocoenoides dalli, revealed by mitochondrial and microsatellite DNA analyses. Mol Ecol 9:1049-1060.
17. Excoffier L, Smouse PE, and Quattro JM, 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491.
18. Fordyce RE and Barnes LG, 1994. The evolutionary history of whales and dolphins. Annu Rev Earth Planet Sci 22:419-455.
19. Fordyce RE, Barnes LG, and Miyazaki N, 1994. General aspects of the evolutionary history of whales and dolphins. Island Arc 3:373-391.
20. García-Rodriguez AI, Bowen BW, Domming D, Mignucci-Giannoni A, Marmontel M, Montoya-Ospina RA, Morales-Vela B, Rudin M, Bonde RK, and McGuires PM, 1998. Phylogeography of the West Indian manatee (Trichechus manatus): how many populations and how many taxa? Mol Ecol 7:1137-1149.
21. Grabert H, 1967. Sobre o desaguamento natural do sistema fluvial do Rio Madeira desde a construção dos Andes. Biota Amazon 1:209-214.
22. Grabert H, 1984. Migration and speciation of the South American Iniidae, Cetacea-mammalia. Zeitschrift Saugetierkunde 49:334-341.
23. Hasegawa M, Kishino H, and Yano T, 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 21:160-174.
24. Hoelzel AR, 1991. Analysis of regional mitochondrial DNA variation in the killer whale: implications for cetacean conservation. Report to the International Whaling Commission, special issue 13:81-120.
25. Hoelzel AR and Dover GA, 1991. Evolution of the cetacean mitochondrial D-loop region. Mol Biol Evol 8:475-493.
26. Irwin DM, Kocher TD, and Wilson AC, 1991. Evolution of the cytochrome b gene of mammals. J Mol Evol 32:128-144.
27. Jukes TH and Cantor CR, 1969. Evolution of protein molecules. In: Mammalian protein metabolism (Munro HN, ed). New York: Academic Press.
28. Kimura M, 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:11-120.
29. Kishino H and Hasegawa M, 1989. Evolution of the maximum likelihood estimate of the evolutionary tree topology from DNA séquence data and the branching order in Hominidae. J Mol Evol 29:170-179.
30. Kumar S, Tamura K, and Nei M, 1993. MEGA: molecular evolutionary genetics analysis, version 1.01. University Park: Pennsylvania State University.
31. Lopez JV, Culver M, Stephens JC, Jonson WE, and O'Brien SJ, 1997. Rates of nuclear and cytoplasmatic mitochondrial DNA sequence divergence in mammals. Mol Biol Evol 14:277-286.
32. Lundberg J, Marshall L, Guerrero J, Horton B, Malabarba C, and Wesselingh F, 1998. The stage for neotropical fish diversification: history of a tropical South American river, In: Phylogeny and classification of neotropical fishes (Malabarba LR, Reis R, Vari R, Lucena Z, and Lucena CA, eds). Porto Alegre, Brasil: Pontificia Universidade Católica Do Rio Grande Do Sul; 13-48.
33. McMillan WO and Bermingham E, 1996. The phylogeographic pattern of mitochondrial DNA variation in the Dall's porpoise Phocoenoides dalli. Mol Ecol 5:47-61.
34. Meade RH and Koehnken L, 1991. Distribution of the river dolphin, tonina Inia geoffrensis in the Orinoco River basin of Venezuela and Colombia. Interciencia 16:300-312.
35. Medrano-Gonzalez L, Aguayo-Lobo A, Urban Ramirez J, and Baker CS, 1995. Diversity and distribution of mitochondrial DNA lineages among humpback whales, Megaptera novaeangliae, en the Mexican Pacific Ocean. Can J Zool 73:1735-1743.
36. Messenger SL and McGuire JA, 1998. Morphology, molecules and the phylogeny of cetaceans. Syst Biol 47:90-124.
37. Moritz C, 1994. Defining "evolutionarily significant units" for conservation. Trends Ecol Evol 9:373-375.
38. Nei M, 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590.
39. O'Corry-Crowe GM, Sudam RS, Rosenberg A, Frost KJ, and Dizon AE, 1997. Phylogeography, population structure and dispersal patterns of the beluga whale Delphinapterus leucas in the western Nearctic revealed by mitochondrial DNA. Mol Ecol 6:955-970.
40. Palumbi S, Martin A, Romano S, and McMillan WO, 1991. The simple fool's guide to PCR. Honolulu: University of Hawaii.
41. Pastene LA, Hiroshi H, Kazuo W, Yoshitaka B, and Mutsuo G, 1996. Phylogenetic relationship in the minke whale world-wide as revealed by two independent analyses of mitochondrial DNA. Resúmenes 7ma Reunión de Especialistas en Mamíferos Marinos Acuáticos de América del Sur y primer congreso de la sociedad latinoamericana de especialistas en mamíferos acúaticos, Viña del Mar, Chile; 53.
42. Pichler F, Dawson S, Slooten E, and Baker CS, 1998. Geographic isolation of Hector's dolphin populations described by mitochondrial DNA sequences. Conserv Biol 12:676-682.
43. Pilleri G and Gihr M, 1977. Observations on the Bolivian, Inia boliviensis, (D'Orbigny, 1834) and the Amazonian bufeo, Inia geoffrensis (Blainville 1817), with a description of a new subspecies (Inia geoffrensis humboldtiana). Invest Cetacea 8:11-76.
44. Pilleri G, Marcuzzi G, and Pilleri O, 1984. Speciation in the Platanistoidea: systematic, zoogeographical and ecological observations on recent species. Invest Cetacea 14:15-46.
45. Rice DW, 1998. Marine mammals of the world. Systematics and distribution. Special publication no 4. Lawrence, KS: Society for Marine Mammalogy.
46. Rosel PE, Dizon AE, and Haygood M, 1995. Variability of the mitochondrial control region in population of the harbour porpoise, Phocoena phocoena, on inter-oceanic and regional scales. Can J Fish Aquat Sci 52:1210-1219.
47. Rosel PE, Dizon AE, and Heyning JE, 1994. Genetic analysis of sympatric morphotypes of common dolphins, genus Delphinus. Mar Biol 119:159-167.
48. Rosel PE, France SC, Wang JY, and Kocher TD, 1999. Genetic structure of harbour porpoise Phocoena phocoena populations in the northwest Atlantic based on mitochondrial and nuclear markers. Mol Ecol 8:S41-S54.
49. Rozas J and Rozas R, 1995. DnaSP: DNA sequence polymorphism an interactive program for simulating population genetics parameters from DNA sequence data. Comput Applic Biosci 11:621-625.
50. Ruiz-García M, Banguera-Hinestroza E, Cárdenas H, and García F, 2002. Morphological analysis of three Inia (Cetacea: Iniidae) populations from Colombia and Bolivia. J Mammal (submitted).
51. Ruiz-García M, Randi E, Martinez-Agüero M, and Alvarez D, in press. Relaciones filogenéticas entre diversos géneros de ciervos neotropicales (Familia Cervidae, Orden Artiodactyla) mediante secuenciación de la región mitocondrial D-loop y marcadores microsatélites Revista de Biologia Tropical. Int J Trop Conserv Biol.
52. Saitou N and Nei M, 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
53. Schneider S, Roessli D, and Excoffier L, 2000. ARLEQUIN version 2000: a software for population genetic data analysis. Geneva, Switzerland: University of Geneva.
54. Sechi E, Wang J, Murray B, Rocha-Campos C, and White B, 1998. Population differentiation in the Franciscana, (Pontoporia blainvillei), from two geographic locations in Brazil as determined from mitochondrial DNA control region sequences. Can J Zool 76:1622-1627.
55. Swofford DL, 1998. PAUP* version 4b. Phylogenetic analysis using parsimony computer program. Champaign, IL: Illinois Natural Survey.
56. Tajima F, 1989. Statistical methods for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
57. Tajima F and Nei M, 1984. Estimation of evolutionary distance between nucleotide sequences. Mol Biol Evol 1:269-285.
58. Tamura K and Nei M, 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512-526.
59. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, and Higgins DG, 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882.
60. Tikel D, 1997. Using a genetic approach to optimise Dugong (Dugong dugon) conservation management (PhD dissertation). North Queensland, Australia: James Cook University.
61. Van Bree PJ and Robineau D, 1973. Notes sur les holotypes de Inia geoffrensis geoffrensis (Blainville, 1817) et Inia geoffrensis boliviensis (Dórbigny 1834), Cetacea, Platanistidae. Mammalia 37:659-663.
62. Wang JY, Chou LS, and White BN, 1999. Mitochondrial DNA analysis of sympatric morphotypes of bottlenose dolphins, genus: Tursiops in Chinese waters. Mol Ecol 8:1593-1602.
63. Wang JY, Gaskin DE, and White BN, 1996. Mitochondrial DNA analysis of harbour porpoise, Phocaena phocaena, subpopulations in North American waters. Can J Fish Aquat Sci 53:1632-1645.