The phylogeographic pattern of mitochondrial DNA variation in the Dall's porpoise Phocoenoides dalli

Molecular Ecology

Volumn 5, Issue 1, 1996, Pages 47-61

  Mcmillan, W O ^a,c,d   Bermingham, E ^b,d  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

^b SMITHSONIAN TROPICAL RESEARCH INSTITUTE   (Panama)

^c APACHE POINT OBSERVATORY   (United States)

^d NONE

Author keywords

Cetaceans; Equilibrium populations; Genetics; Intraspecific gene genealogies; Management

Indexed keywords

MITOCHONDRIAL DNA; RESTRICTION ENDONUCLEASE;

ANIMAL; ARTICLE; CLASSIFICATION; COMPARATIVE STUDY; DOLPHIN; FEMALE; GENETIC VARIABILITY; GENETICS; PACIFIC OCEAN; PHYLOGENY; POPULATION GENETICS; SPECIES DIFFERENCE; VERTEBRATE;

ANIMALS; DNA RESTRICTION ENZYMES; DNA, MITOCHONDRIAL; DOLPHINS; FEMALE; GENETICS, POPULATION; PACIFIC OCEAN; PHYLOGENY; SPECIES SPECIFICITY; VARIATION (GENETICS); VERTEBRATES;

ANIMALIA; PHOCOENIDAE; PHOCOENOIDES DALLI; VERTEBRATA;

EID: 0030088051     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-294X.1996.tb00290.x     Document Type: Article

References (73)

1. Amos B, Barrett J, Dover GA (1991) Breeding system and social structure in the Faroese Pilot whale as revealed by DNA fingerprinting. In: The Genetic Ecology of Whales and Dolphins (ed. Hoelzel AR), pp. 255-268. Special Publication no.13 of the International Whaling Commission, Cambridge.
2. Avise JC, Reeb CA, Saunders NC (1987) Geographic population structure and species differences in mitochondrial DNA of mouthbrooding marine catfishes (Ariidae) and demersal spawning toadfish (Batrachoididae). Evolution, 41, 991-1002.
3. Avise JC, Ball RM, Arnold J (1988) Current vs. historical population sizes in vertebrate species with high gene flow: a comparison based on mitochondrial DNA lineages and inbreeding theory for neutral mutations. Molecular Biology and Evolution, 5, 331-344.
4. Avise JC Helfman GS, Sanders NC, Hales LS (1986) Mitochondrial DNA differentiation in North Atlantic eels: population genetic consequences of an unusual life history pattern. Proceedings of the National Academy of Sciences of the USA, 83, 4350-4354.
5. Avise, JC (1994) Molecular Markers, Natural History and Evolution. Chapman and Hall, New York.
6. Baker CS, Palumbi SR, Lambertson RH, Weinrich MT, Calambokidis J, O'Brien SJ (1990) Influence of seasonal migration on the geographic distribution of mitochondrial DNA haplotypes in humpback whales. Nature, 334, 238-240.
7. Ball RM, Freeman S, James FC, Bermingham E, Avise JC (1988) Phylogeographic population structure of Red-winged Blackbirds assessed by mitochondrial DNA. Proceedings of the National Academy of Sciences of the USA, 85, 1558-1562.
8. Barnes, LG (1985) Evolution, taxonomy and anti-tropical distribution of the porpoises (Phocoenidae, Mammalia). Marine Mammal Science, 1, 149-165.
9. Bekoff M, Wells MC (1986) Social ecology and behavior of Coyotes. In: Advances in the Study of Behavior, Vol. 16 (eds Rosenblatt JS, Beer C, Burnel M-C, Slater PJB), pp. 252-238. Academic Press, Orlando.
10. Berg WE, Chesness RA (1987) Ecology of coyotes in northern Minnesota. In: Coyotes: Biology, Behavior, and Management (ed. Bekoff M), pp. 229-247. Academic Press, New York.
11. Bermingham E (1990) Mitochondrial DNA and the analysis of fish population structure. In: Electrophoretic and Isoelectric Focusing Techniques in Fisheries Management (ed. Whitmore DH), pp. 197-222. CRC Press, Florida.
12. Bermingham E, Avise JC (1986) Molecular zoogeography of freshwater fishes in the southeastern United States. Genetics, 113, 939-965.
13. Bigg MA, Olesiuk PF, Ellis GM, Ford JKB, Balcomb III KC (1990) Social organization and genealogy of resident Killer whales (Orcinus orca) in the coastal waters of British Columbia and Washington State. In: Individual Recognition of Cetaceans: Use of Photo-identification and Other Techniques to Estimate Population Parameters (eds Hammond PH, Mizroch SA, Donovan GP), pp. 383-405. Special Publication no. 12 of the International Whaling Commission, Cambridge.
14. Bruford MW, Wayne RK (1993) Microsatellites and their application to population genetic studies. Current Opinion in Genetics and Development, 3, 939-943.
15. Cann RL, Brown WM, Wilson AC (1984) Polymorphic sites and the mechanism of evolution in human mitochondrial DNA. Genetics, 106, 579-499.
16. CLIMAP, project members (1976) The surface of the ice-age earth. Science, 191, 1131-1137.
17. DeAngelis DL, Waterhouse JC (1987) Equilibrium and non-equilibrium concepts in ecological models. Ecological Monographs, 57, 1-21.
18. Dhondt AA (1989) Blue tit. In: Lifetime Reproduction in Birds (ed. Newton I), pp. 15-33. Academic Press, London.
19. Dizon AE, Lockyer C, Perrin WF, Demaster DP, Sisson J (1992) Rethinking the stock concept: a phylogenetic approach. Conservation Biology, 6, 335-364.
20. Dizon AE, Southern SO, Perrin WF (1991) Molecular analysis of mtDNA types in exploited populations of spinner dolphins (Stenella longirostris). In: The Genetic Ecology of Whales and Dolphins (ed. Hoelzel AR), pp. 183-202. Special Publication no.13 of the International Whaling Commission, Cambridge.
21. Engles, WR (1981) Estimating genetic divergence and genetic variability with restriction endonucleases. Proceedings of the National Academy of Sciences of the USA, 78, 6329-6333.
22. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
23. Ford JKB (1991) Family Fuges. Natural History, 3, 68-76.
24. Gill FB, Mostrom AM, Mack AL (1993) Speciation in North American chickadees: I. patterns of mtDNA genetic divergence. Evolution, 47, 195-212.
25. Hoelzel RA, Dover GA (1991) Genetic differentiation between sympatric Killer Whale populations. Heredity, 66, 191-195.
26. Hudson RR (1990) Gene genealogies and the coalescent process. Oxford Surveys in Evolutionary Biology, 7, 1-44.
27. Jones LL, Bouchet GC, Rice DW, Wolman AA (1984) Progress report on studies of the incidental take of marine mammals, particularly Dall's porpoise, by the Japanese salmon fisheries, 1978-1983. Document submitted to the Ad hoc Committee on Marine Mammals, International North Pacific Fisheries Commission.
28. Jones LL, Bouchet GC, Turnock BJ (1987) Comprehensive report on the incidental take, biology and status of Dall's porpoise. Document submitted to the Ad Hoc Committee on Marine Mammals, International North Pacific Fisheries Commission.
29. Kasuya T (1978) The life history of Dall's porpoise with special reference to the stock off the Pacific coast of Japan. Scientific Report of the Whale Research Institute, 30, 1-63.
30. Kasuya T, Jones LL (1984) Behavior and segregation of the Dall's porpoise in the northwestern North Pacific Ocean. Scientific Report of the Whale Research Institute, 35, 107-128.
31. Lansman RA, Shade RO, Shapira JF, Avise JC (1981) The use of restriction endonucleases to measure mitochondrial DNA sequence relatedness in natural populations. II. Techniques and potential applications. Journal of Molecular Evolution, 17, 214-226.
32. Lehman N, Wayne RK (1991) Analysis of Coyote mitochondrial DNA genotype frequencies: estimation of effective number of alleles. Genetics, 128, 405-416.
33. Maddison WP, Maddison DR (1992) MacClade: Analysis of Phytogeny and Character Evolution. Sinauer Press, Sunderland.
34. Martin AP, Palumbi SR (1993) Body size, metabolic rate, generation time and the molecular clock. Proceedings of the National Academy of Sciences of the USA, 90, 4087-4091.
35. McCleery RH Perrins CM (1989) Great tit. In: Lifetime Reproduction in Birds (ed. Newton I), pp. 183-197. Academic Press, London.
36. McMillan WO, Palumbi SR (1995) Concordant evolutionary patterns among Indo-West Pacific butterflyfishes. Proceedings of the Royal Society of London, B126, 229-236.
37. McMillan WO, Raff RA, Palumbi SR (1992) Population genetic consequences of developmental evolution and reduced dispersal in sea urchins (Genus Heliocidaris). Evolution, 46, 1299-1312.
38. Morejohn GV (1979) The natural history of Dall's porpoise in the North Pacific Ocean. In: Behavior of Marine Animals, Vol. 3 (eds Winn HE, Oila BL), pp. 45-83. Plenum Press, New York.
39. Moritz C (1994) Applications of mitochondrial DNA analysis in conservation: a critical review. Molecular Ecology, 3, 401-411.
40. Moritz C (1994) Defining 'Evolutionary Significant Units' for conservation. Trends in Ecology and Evolution, 9, 373-375.
41. Nei M (1973) Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences of the USA, 70, 3321-3323.
42. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
43. Nei M, Tajima T (1983) Maximum likelihood estimation of the nucleotide substitutions from restriction site data. Gentrics, 105, 207-217.
44. Neigel JE, Avise JC (1986) Phylogenetic relationships of mitochondrial DNA under various demographic modes of speciation. In: Evolution Process and Theory (eds Karlin S, Nevo E), pp. 515-534. Academic Press, New York.
45. Norris KS, Dohl TP (1980) The structure and functions of cetacean schools. In: Cetacean Behavior (ed. Herman LM), pp. 211-262. John Wiley and Sons, New York.
46. Olesiuk PF, Bigg MA, Ellis GM (1990) Life history and population dynamics of resident Killer whales (Orcinus area) in the coastal waters of British Columbia and Washington State. In: Individual Recognition of Cetaceans: Use of Photo-identification and Other Techniques to Estimate Population Parameters (eds Hammond PS, Mizroch SA, Donovan GP), pp. 209-243. Special Publication no. 12 of the International Whaling Commission, Cambridge.
47. Orians GH, Beletsky LD (1989) Red-winged blackbird. In: Lifetime Reproduction in Birds (ed. Newton I), pp. 183-197. Academic Press, London.
48. Palumbi SR, Martin AP, Kessing B, McMillan WO (1991) Detecting population structure using mitochondrial DNA. In: The Genetic Ecology of Whales and Dolphins (ed. Hoelzel AR), pp. 271-278. Special Publication no. 13 of the International Whaling Commission, Cambridge.
49. Palumbi SR, Wilson AC (1990) Mitochondrial DNA diversity in the sea urchins Stronglocentrotus purpuratus and S. droebachiensi's. Evolution, 44, 403-415.
50. Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 9, 552-569.
51. Ryder OA (1986) Species conservation and systematics: the dilemma of subspecies. Trends in Ecology and Evolution, 1, 9-10.
52. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor.
53. Saunders NC, Kessler LG, Avise JC (1986) Genetic variation and geographic differentiation in mitochondrial DNA of the horseshoe crab, Limulus polyphemus. Genetics, 112, 613-627.
54. Schlötterer C, Amos B, Tautz D (1991) Conservation of polymorphic simple sequence loci in cetacean species. Nature, 354, 63-65.
55. Shields GF, Wilson AC (1987) Calibration of mitochondrial DNA evolution in geese. Journal of Molecular Biology, 24, 212-217.
56. Shulman MJ, Bermingham E (1995) Early Life Histories, ocean currents, and the population genetic of Caribbean reef fishes. Evolution, in press.
57. Slatkin M (1989) Detecting small amounts of gene flow from phylogenies of alleles. Genetics, 121, 609-612.
58. Slatkin M (1987) Gene flow and the geographic structure of natural populations. Science, 236, 787-792.
59. Slatkin M, Hudson RR (1991) Pairwise comparison of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics, 129, 55-562.
60. Slatkin M, Maddison WP (1989) A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics, 123, 603-613.
61. Swofford DL (1993) Phylogenetic Analysis Using Parsimony. Sinauer Associates, Sunderland, MA.
62. Swofford DL, Olsen GJ (1990) Phylogeny reconstruction. In: Molecular Systematics (eds Hillis DM, Moritz C), pp. 411-501. Sinauer Associates, Sunderland, MA.
63. Tajima F (1983) Evolutionary relationships of DNA sequences in finite populations. Genetics, 105, 437-460.
64. Takahata N, Palumbi SR (1985) Extranuclear differentiation and gene flow in the finite island model. Genetics, 109, 441-457.
65. Templeton AR (1983) Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the humans and apes. Evolution, 37, 221-244.
66. Wada S, Kobayashi T, Numachi K (1991) Genetic variability and differentiation of mitochondrial DNA in minke whales. In: Genetic Ecology of Whales and Dolphins (ed. Hoelzel RA), pp. 203-215. Special Publication no. 13 of the International Whaling Commission, Cambridge.
67. Walker WA (1991) Geographic variation of the parasites Crassicauda (Nematoda) and Phyllobothrium (Cestoda) in Phocoenoides dalli in the northern Pacific, Bering Sea, and Okhotsk Sea. Report to the International Whaling Commission SC/42/SM16.
68. Waples RS (1991) Pacific salmon, Oncorhynchus spp., the definition of a 'species' under the Endangered Species Act. Marine Fisheries Review, 53, 11-22.
69. Wells RS, Irvine AB, Scott MD (1980) The Social Ecology of Inshore Odontocetes. In: Cetacean Behavior (ed. Herman LM), pp. 263-318. John Wiley and Sons, New York.
70. Wells RS, Scott MD (1990) Estimating Bottlenose dolphin population parameters from individual identification and capturerelease techniques. In: Individual Recognition of Cetaceans: Use of Photo-identification and Other Techniques to Estimate Population Parameters (eds Hammond PS, Mizroch SA, Donovan GP), pp. 407-415. Special Publication no. 12 of the International Whaling Commission, Cambridge.
71. Wilson AC, Cann RL, Carr SM, George M, Gyllensten UB, HelmBychowski K, Higuchi RG, Palumbi SR, Pranger EM, Sage RD, Stoneking M (1985) Mitochondrial DNA and two perspectives on evolutionary genetics. Biological Journal of the Linnean Society, 26, 375-400.
72. Winans GA, Jones LJ (1988) Electrophoretic variability in the Dall's porpoise (Phocoenoides dalli) in the North Pacific Ocean and Bering Sea. Journal of Mammalogy, 69, 4-21.
73. Wursig B, Wursig M (1977) The photographic determination of group size, composition, and stability of coastal porpoises (Tursiops truncatus). Science, 198, 755-756.