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Volumn 15, Issue 5, 2002, Pages 331-340

Mcg light chain dimer as a model system for ligand design: A docking study

Author keywords

Antibody; Combinatorial library; Cross reactivity; Docking; Ligand design; Peptide

Indexed keywords

DIMER; IMMUNOGLOBULIN LIGHT CHAIN; LIGAND; PEPTIDE;

EID: 0036761180     PISSN: 09523499     EISSN: None     Source Type: Journal    
DOI: 10.1002/jmr.595     Document Type: Article
Times cited : (4)

References (29)
  • 1
    • 0027686741 scopus 로고
    • Molecular basis of crossreactivity and the limits of antibody-antigen complementarity
    • Arevalo JH, Taussig MJ, Wilson IA. 1993. Molecular basis of crossreactivity and the limits of antibody-antigen complementarity. Nature 365: 859-863.
    • (1993) Nature , vol.365 , pp. 859-863
    • Arevalo, J.H.1    Taussig, M.J.2    Wilson, I.A.3
  • 2
    • 0026353575 scopus 로고
    • Computer modeling of combining site structure of anti-hapten monoclonal antibodies
    • Bolger MB, Sherman MA. 1991. Computer modeling of combining site structure of anti-hapten monoclonal antibodies. Meth. Enzymol. 203: 21-45.
    • (1991) Meth. Enzymol. , vol.203 , pp. 21-45
    • Bolger, M.B.1    Sherman, M.A.2
  • 3
    • 0028047705 scopus 로고
    • Rigid-body docking with mutant constraints of influenza hemagglutinin with antibody HC19
    • Cherfils J, Bizebard T, Knossow M, Janin J. 1994. Rigid-body docking with mutant constraints of influenza hemagglutinin with antibody HC19. Proteins 18: 8-18.
    • (1994) Proteins , vol.18 , pp. 8-18
    • Cherfils, J.1    Bizebard, T.2    Knossow, M.3    Janin, J.4
  • 4
    • 0021107965 scopus 로고
    • Solvent-accessible surfaces of proteins and nucleic acids
    • Connolly ML. 1983. Solvent-accessible surfaces of proteins and nucleic acids. Science 221: 709-713.
    • (1983) Science , vol.221 , pp. 709-713
    • Connolly, M.L.1
  • 5
    • 0022487844 scopus 로고
    • Three-dimensional analyses of the binding of synthetic chemotactic and opioid peptides in the Mcg light chain dimer
    • Edmundson AB, Ely KR. 1986. Three-dimensional analyses of the binding of synthetic chemotactic and opioid peptides in the Mcg light chain dimer. Ciba Found. Symp. 119: 107-129.
    • (1986) Ciba Found. Symp. , vol.119 , pp. 107-129
    • Edmundson, A.B.1    Ely, K.R.2
  • 6
    • 0023226209 scopus 로고
    • The binding of opioid peptides to the Mcg light chain dimer: Flexible keys and adjustable locks
    • Edmundson AB, Ely KR, Herron JN, Cheson BD. 1987. The binding of opioid peptides to the Mcg light chain dimer: Flexible keys and adjustable locks. Mol. Immunol. 24: 915-935.
    • (1987) Mol. Immunol. , vol.24 , pp. 915-935
    • Edmundson, A.B.1    Ely, K.R.2    Herron, J.N.3    Cheson, B.D.4
  • 10
    • 0024791087 scopus 로고
    • Three-dimensional structure of a light chain dimer crystallized in water. Conformational flexibility of a molecule in two crystal forms
    • Ely KR, Herron JN, Harker M, Edmundson AB. 1989. Three-dimensional structure of a light chain dimer crystallized in water. Conformational flexibility of a molecule in two crystal forms. J. Mol. Biol. 210: 601-615.
    • (1989) J. Mol. Biol. , vol.210 , pp. 601-615
    • Ely, K.R.1    Herron, J.N.2    Harker, M.3    Edmundson, A.B.4
  • 11
    • 6244283606 scopus 로고    scopus 로고
    • Critical evaluation of search algorithms for automated molecular docking and database searching
    • Ewing TJA, Kuntz ID. 1997. Critical evaluation of search algorithms for automated molecular docking and database searching. J. Comput. Chem. 18: 1175-1189.
    • (1997) J. Comput. Chem. , vol.18 , pp. 1175-1189
    • Ewing, T.J.A.1    Kuntz, I.D.2
  • 12
    • 0036606483 scopus 로고    scopus 로고
    • Principles of docking: An overview of search algorithms and a guide to scoring functions
    • Halperin I, Ma B, Wolfson H, Nussinov R. 2002. Principles of docking: An overview of search algorithms and a guide to scoring functions. Proteins Struct. Funct. Genet. 47: 409-443.
    • (2002) Proteins Struct. Funct. Genet. , vol.47 , pp. 409-443
    • Halperin, I.1    Ma, B.2    Wolfson, H.3    Nussinov, R.4
  • 13
    • 0033865983 scopus 로고    scopus 로고
    • Binding of nascent collagen by amyloidogenic light chains and amyloid fibrillogenesis in monolayers of human fibrocytes
    • Harris DL, King E, Ramsland PA, Edmundson AB. 2000. Binding of nascent collagen by amyloidogenic light chains and amyloid fibrillogenesis in monolayers of human fibrocytes. J. Mol. Recognit. 13: 198-212.
    • (2000) J. Mol. Recognit. , vol.13 , pp. 198-212
    • Harris, D.L.1    King, E.2    Ramsland, P.A.3    Edmundson, A.B.4
  • 14
    • 0035806423 scopus 로고    scopus 로고
    • Structure-based drug design
    • Henry CM. 2001. Structure-based drug design. C&EN 79: 69-78.
    • (2001) C&EN , vol.79 , pp. 69-78
    • Henry, C.M.1
  • 15
    • 0036558201 scopus 로고    scopus 로고
    • The design of combinatorial libraries
    • Kubinyi H. 2002. The design of combinatorial libraries. Drug Discov. Today 7: 503-504.
    • (2002) Drug Discov. Today , vol.7 , pp. 503-504
    • Kubinyi, H.1
  • 16
    • 0032872173 scopus 로고    scopus 로고
    • How many leads from HTS
    • Lahana R. 1999. How many leads from HTS. Drug Discov. Today 4: 447-448.
    • (1999) Drug Discov. Today , vol.4 , pp. 447-448
    • Lahana, R.1
  • 17
    • 84986467005 scopus 로고
    • Conformational analysis of flexible ligands in macromolecular receptor sites
    • Leach AR, Kuntz ID. 1992. Conformational analysis of flexible ligands in macromolecular receptor sites. J. Comput. Chem. 13: 730-748.
    • (1992) J. Comput. Chem. , vol.13 , pp. 730-748
    • Leach, A.R.1    Kuntz, I.D.2
  • 18
    • 0001139413 scopus 로고    scopus 로고
    • Automated flexible ligand docking method and its application for database search
    • Makino S, Kuntz ID. 1997. Automated flexible ligand docking method and its application for database search. J. Comput. Chem. 18: 1812-1825.
    • (1997) J. Comput. Chem. , vol.18 , pp. 1812-1825
    • Makino, S.1    Kuntz, I.D.2
  • 19
    • 0028304962 scopus 로고
    • Satisfying hydrogen bonding potential in proteins
    • McDonald IK, Thornton JM. 1994. Satisfying hydrogen bonding potential in proteins. J. Mol. Biol. 238: 777-793.
    • (1994) J. Mol. Biol. , vol.238 , pp. 777-793
    • McDonald, I.K.1    Thornton, J.M.2
  • 21
    • 0028289241 scopus 로고
    • Anatomy of the antibody molecule
    • Padlan EA. 1994. Anatomy of the antibody molecule. Mol. Immunol. 31: 169-217.
    • (1994) Mol. Immunol. , vol.31 , pp. 169-217
    • Padlan, E.A.1
  • 22
    • 0025785057 scopus 로고
    • Protein docking and complementarity
    • Shoichet BK, Kuntz ID. 1991. Protein docking and complementarity. J. Mol. Biol. 221: 327-346.
    • (1991) J. Mol. Biol. , vol.221 , pp. 327-346
    • Shoichet, B.K.1    Kuntz, I.D.2
  • 24
    • 0033032013 scopus 로고    scopus 로고
    • Ligand binding by antibody IgE Lb4: Assessment of binding site preferences using microcalorimetry, docking, and free energy simulations
    • Sotriffer CA, Flader W, Cooper A, Rode BM, Linthicum DS, Liedl KR, Varga JM. 1999. Ligand binding by antibody IgE Lb4: Assessment of binding site preferences using microcalorimetry, docking, and free energy simulations. Biophys. J. 76: 2966-2977.
    • (1999) Biophys. J. , vol.76 , pp. 2966-2977
    • Sotriffer, C.A.1    Flader, W.2    Cooper, A.3    Rode, B.M.4    Linthicum, D.S.5    Liedl, K.R.6    Varga, J.M.7
  • 25
    • 0024370046 scopus 로고
    • Similar binding properties of peptide ligands for a human immunoglobulin and its light chain dimer
    • Tribbick G, Edmundson AB, Mason TJ, Geysen HM. 1989. Similar binding properties of peptide ligands for a human immunoglobulin and its light chain dimer. Mol. Immunol. 26: 625-635.
    • (1989) Mol. Immunol. , vol.26 , pp. 625-635
    • Tribbick, G.1    Edmundson, A.B.2    Mason, T.J.3    Geysen, H.M.4
  • 26
    • 0028922586 scopus 로고
    • LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
    • Wallace AC, Laskowski RA, Thornton JM. 1995. LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions. Protein Engng 8: 127-134.
    • (1995) Protein Engng , vol.8 , pp. 127-134
    • Wallace, A.C.1    Laskowski, R.A.2    Thornton, J.M.3
  • 27
    • 0033168443 scopus 로고    scopus 로고
    • Flexible ligand docking: A multistep strategy approach
    • Wang J, Kollman PA, Kuntz ID. 1999. Flexible ligand docking: A multistep strategy approach. Proteins 36: 1-19.
    • (1999) Proteins , vol.36 , pp. 1-19
    • Wang, J.1    Kollman, P.A.2    Kuntz, I.D.3
  • 28
    • 0034958059 scopus 로고    scopus 로고
    • Docking of combinatorial peptide libraries into a broadly cross-reactive human IgM
    • Yuriev E, Ramsland PA, Edmundson AB. 2001. Docking of combinatorial peptide libraries into a broadly cross-reactive human IgM. J. Mol. Recognit. 14: 172-184.
    • (2001) J. Mol. Recognit. , vol.14 , pp. 172-184
    • Yuriev, E.1    Ramsland, P.A.2    Edmundson, A.B.3
  • 29
    • 0036226997 scopus 로고    scopus 로고
    • Recognition of IgG-derived peptides by a human IgM with an unusual combining site
    • Yuriev E, Ramsland PA, Edmundson AB. 2002. Recognition of IgG-derived peptides by a human IgM with an unusual combining site. Scand. J. Immunol. 55: 242-253.
    • (2002) Scand. J. Immunol. , vol.55 , pp. 242-253
    • Yuriev, E.1    Ramsland, P.A.2    Edmundson, A.B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.