Structural and functional comparisons between vanadium haloperoxidase and acid phosphatase enzymes

Journal of Molecular Recognition

Volumn 15, Issue 5, 2002, Pages 291-296

  Littlechild, Jennifer ^a   Garcia Rodriguez, Esther ^a   Dalby, Andrew ^a   Isupov, Misha ^a  

^a UNIVERSITY OF EXETER   (United Kingdom)

Author keywords

Acid phosphatase; Corallina officinalis; Vanadium haloperoxidase

Indexed keywords

ACID PHOSPHATASE; AMINO ACID; BROMOPEROXIDASE; PHOSPHATE BINDING AGENT; VANADIUM HALOPEROXIDASE; BROMIDE PEROXIDASE; CHLORIDE PEROXIDASE; PEROXIDASE; PHOSPHATE; VANADIUM; VANADIUM CHLOROPEROXIDASE;

CRYSTAL STRUCTURE; ENZYME MECHANISM; AMINO ACID SEQUENCE; CHEMICAL STRUCTURE; CHEMISTRY; COMPARATIVE STUDY; ENZYME ACTIVE SITE; ENZYMOLOGY; GENETICS; METABOLISM; MOLECULAR GENETICS; PROTEIN CONFORMATION; RED ALGA; REVIEW; SEQUENCE HOMOLOGY; SITE DIRECTED MUTAGENESIS;

ACID PHOSPHATASE; ALGAE, RED; AMINO ACID SEQUENCE; CATALYTIC DOMAIN; CHLORIDE PEROXIDASE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; PEROXIDASES; PHOSPHATES; PROTEIN CONFORMATION; SEQUENCE HOMOLOGY, AMINO ACID; VANADIUM;

EID: 0036760432     PISSN: 09523499     EISSN: None     Source Type: Journal    
DOI: 10.1002/jmr.590     Document Type: Review

References (48)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, David J, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
2. Arber JM, de Boer E, Garner CD, Hasnain SS, Wever R. 1989. Vanadium K-edge X-ray absorption spectroscopy of bromoperoxidase from Ascophyllum nodosum. Biochemistry 28: 7968-7973.
3. Brindley A, Dalby A, Isupov M, Littlechild J. 1998. Preliminary X-ray analysis of a new crystal form of the vanadium-dependent bromoperoxidase from Corallina officinalis. Acta Crystallogr. D 54: 454-457.
4. Butler A. 1999. Mechanistic considerations of the vanadium haloperoxidases. Coord. Chem. Rev. 187: 17-35.
5. Casný M, Rehder D, Schmidt H, Vilter H, Conte V. 2000. A O-17 NMR study of peroxide binding to the active centre of bromoperoxidase from Ascophyllum nodosum. J. Inorg. Biochem. 80: 157-160.
6. Colpas GJ, Hamstra BJ, Kampf JW, Pecoraro VL. 1996. Functional models for vanadium haloperoxidase: Reactivity and mechanism of halide oxidation. J. Am. Chem. Soc. 118: 3469-3478.
7. 2+; a self-consistent potentiometric and spectroscopic study. Polyhedron 13: 3177-3198.
8. Coupe EE, Garcia E, Littlechild J. 2001. Structure of vanadium bromoperoxidase enzyme from Corallina species. 3rd International Symposium on Chemistry and Biological Chemistry of Vanadium, Japan; p40.
9. Dau H, Dittmer J, Epple M, Hanss J, Kiss E, Rehder D, Schulzke C, Vilter H. 1999. Bromine K-edge EXAFS studies of bromide binding to bromoperoxidase from Ascophyllum nodosum. FEBS Lett. 457: 237-240.
10. de Boer E, Wever R. 1988. The reaction mechanism of the novel vanadium-bromoperoxidase. A steady-state kinetic analysis. J. Biol. Chem. 263: 12326-12332.
11. de Boer E, Tromp MGM, Plat H, Krenn GE, Wever R. 1986. Vanadium(V) as an essential element for haloperoxidase activity in marine brown-algae-purification and characterization of a vanadium(V)-containing bromoperoxidase from Laminaria-saccharina. Biochim. Biophys. Acta 872: 104-115.
12. de Boer E, Boon K, Wever R. 1988. Electron paramagnetic resonance studies on conformational states and metal ion exchange properties of vanadium bromoperoxidase. Biochemistry 27: 1629-1635.
13. Esnouf RM. 1999. Further additions to MolScript version 1.4, including reading and contouring of electron-density maps. Acta Crystallogr. D 55: 938-940.
14. Everett RR, Butler A. 1987. Probing the substrate-specificity of the vanadium bromoperoxidase. Abstr. Papers Am. Chem. Soc. 194: 194.
15. Everett RR, Soedjak HS, Butler A. 1990. Mechanism of dioxygen formation catalyzed by vanadium bromoperoxidase. Steady state kinetic analysis and comparison to the mechanism of bromination. J. Biol. Chem. 265: 15671-15679.
16. Fritzsche M, Vergopoulos V, Rehder D. 1993. Complexation of histidine and alanyl-histidine by vanadate in aqueous-medium. Inorg. Chim. Acta 211: 11-16.
17. Grant RA, Filman DJ, Finkel SE, Kolter R, Holge JM. 1998. The crystal structure of Dps, a ferritin homolog that binds and protects DNA. Nat. Struct. Biol. 5: 294-303.
18. Hemrika W, Renirie R, Dekker HL, Barnett P, Wever R. 1997. From phosphatases to vanadium peroxidases: A similar architecture of the active site. Proc. Natl Acad. Sci. USA 94: 2145-2149.
19. Hemrika W, Renirie R, Macedo-Ribeiro S, Messerschmidt A, Wever R. 1999. Heterologous expression of the vanadium-containing chloroperoxidase in Saccharomyces cerevisiae and site-directed mutagenesis of the active site residues His496, Lys353, Arg360 and Arg490. J. Biol. Chem. 274: 23820-23827.
20. Hormes J, Kuetgens U, Chauvistre R, Schreiber W, Anders N, Vilter H, Rehder K, Weidemann C. 1988. Vanadium K-edge absorption spectrum of bromoperoxidase from Ascophyllum nodosum. Biochim. Biophys. Acta 956: 293.
21. Ishikawa Y, Mihara Y, Gondoh K, Suzuki E-i, Asano Y. 2000. X-ray structures of a novel acid phosphatase from Escherichia blatae and its complex with the transition-state analog molybdate. EMBO J. 19: 2412-2423.
22. Isupov M, Dalby A, Brindley M, Izumi T, Tanabe T, Murshudov G, Littlechild JA. 2000. Crystal structure of dodecameric vanadium dependent bromoperoxidase from the red algae Corallina officinalis. J. Mol. Biol. 299: 1035-1049.
23. Itoh N, Izumi Y, Yamada H. 1986. Characterisation of nonheme type bromoperoxidase in Corallina pilulifera. J. Biol. Chem. 261: 5194-5200.
24. Itoh N, Izumi Y, Yamada H. 1987. Haloperoxidase-catalyzed halogenation of nitrogen-containing aromatic heterocycles represented by nucleic bases. Biochemistry 26: 282-289.
25. Jones TA, Zou J-Y, Cowan SW, Kjeldgaard M. 1991. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. D 50: 157-163.
26. Littlechild J. 1999. Haloperoxidases and their role in biotransformation reactions. Curr. Opin. Chem. Biol. 3: 28-34.
27. Macedo-Ribeiro S, Hemrika W, Renirie R, Wever R, Messerschmidt A. 1999. X-ray crystal structures of active site mutants of the vanadium-containing chloroperoxidase from the fungus Curvularia inequalis. J. Biol. Inorg. Chem. 4: 209-219.
28. Madan Babu M, Kamalakkannan VBK, Subrahmanyam, Sankaran K. 2002. Shigella apyrase - A novel variant of bacterial acid phosphatases? FEBS Lett. 512: 8-12.
29. Merritt EA, Bacon DJ. 1997. Raster3D: Photorealistic molecular graphics. Meth. Enzymol. 277: 505-524.
30. Messerschmidt A, Wever R. 1996. X-ray structure of a vanadium-containing enzyme: Chloroperoxidase from the fungus Curvularia inaequalis. Proc. Natl Acad. Sci. USA 93: 392-396.
31. Messerschmidt A, Prade L, Wever R. 1997. Implications for the catalytic mechanism of the vanadium-containing enzyme chloroperoxidase from the fungus Curvularia inaequalis by X-ray structures of the native and peroxide form. J. Biol. Chem. 378: 309-315.
32. Neidleman SL, Geigert J. 1986. Biohalogenation: Principles, Basic Roles and Applications. Ellis Horwood: Chichester; 13-44.
33. Neuwald AF. 1997. An unexpected structural relationship between integral membrane phosphatases and soluble haloperoxidases. Protein Sci. 6: 1764-1767.
34. Rehder D, Schulzke C, Dau H, Meinke C, Hanss J, Epple M. 2000. Water and bromide in the active center of vanadate-dependent haloperoxidases. J. Inorg. Biochem. 80: 115-121.
35. Renirie R, Hemika W, Wever R. 2000. Peroxidase and phosphatase activity of active site mutants of vanadium chloroperoxidase from the fungus Curvularia inaequalis: Implications for the catalytic mechanism. J. Biol. Chem. 275: 11650-11657.
36. Rush C, Willetts A, Davies G, Dauter Z, Watson H, Littlechild JA. 1995. Purification, crystallisation and preliminary X-ray analysis of the vanadium-dependent haloperoxidase from Corallina officinalis. FEBS Lett. 359: 244-246.
37. Shimonishi M, Kuwamoto S, Inoue H, Wever R, Ohshiro T, Izumi Y, Tanabe T. 1998. Cloning and expression of the gene for a vanadium-dependent bromoperoxidase from a marine macro-algae, Corallina pilulfera. FEBS Lett 428: 105-110.
38. Simons BH, Barnett P, Vollenbroek EGM, Dekker HL, Muijsers AO, Messerschmidt A, Wever R. 1995. Primary structure and characterization of the vanadium chloroperoxidase from the fungus Curvularia inaequalis. Eur. J. Biochem. 229: 566-574.
39. Soedjak HS, Walker JV, Butler A. 1995. Inhibition and inactivation of vanadium bromoperoxidase by the substrate hydrogen-peroxide and further mechanistic studies. Biochemistry 34: 12689-12696.
40. Tanaka N, Dumay V, Liao Q, Lange AJ, Wever R. 2002. Bromoperoxidase activity of vanadate-substituted acid phosphatases from Shigella flexneri and Salmonella enterica ser typhimurium. Eur. J. Biochem. 269: 2162-2167.
41. Totaro RM, Williams PAM, Apella MC, Blesa MA, Baran EJ. 2000. Bromination of phenol red mediated by vanadium(V) peroxo complexes at pH 6.5. J. Chem. Soc. Dalton Trans. 23: 4403-4406.
42. Villeret V, Clantin B, Tricot C, Legrain C, Roovers M, Stalon V, Glansdorff N, Van Beeumen J. 1998. The crystal structure of Pyrococcus furiosus ornithine carbamoyltransferase reveals a key role for oligomerization in enzyme stability at extremely high temperatures. Proc. Natl Acad. Sci. USA 95: 2801-2806.
43. Vilter H. 1983. Peroxidases from phaeophyceae. 3. Catalysis of halogenation by peroxidases from Ascophyllum-nodosum (L) Le-Jol. Bot. Mar. 26: 429-435.
44. Vilter H. 1995. Vanadium and its role in life. In Metal Ions in Biological Systems, Vol. 31, Sigel H, Sigel A (eds). Marcel Dekker, New York; 325-362.
45. Vreeland V, Waite JH, Epstein L. 1998. Polyphenols and oxidases in substratum adhesion by marine algae and mussels. J. Phycol. 34: 1-8.
46. Vreeland V, Ng K, Epstein L. 2000. Purification of marine algal vanadate bromoperoxidase dodecamer by preparative native PAGE on a BioLogic-driven Mini Prep cell. Bio-Rad bulletin, no. 2078 US/EG.
47. Wever R, Hemrika W, Renirie R. 2001. Peroxidase and phosphatase activity of vanadium chloroperoxidase: The catalyic mechanisms. J. Inorg. Biochem. 86: 112.
48. Weyand M, Hecht H, Kiess M, Liaud M, Vilter H, Schomburg D. 1999. X-ray structure determination of a vanadium-dependent haloperoxidase from Ascophyllum nodosum at 2.0 Å resolution. J. Mol. Biol. 293: 595-611.