메뉴 건너뛰기




Volumn 43, Issue 4, 1996, Pages 182-189

Stem-loop potential in MHC genes: A new way of evaluating positive Darwinian selection?

Author keywords

[No Author keywords available]

Indexed keywords

PHOSPHOLIPASE A; PHOSPHOLIPASE A2; SNAKE VENOM;

EID: 0030030417     PISSN: 00937711     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF00587298     Document Type: Article
Times cited : (23)

References (43)
  • 1
    • 0023219693 scopus 로고
    • Class II genes of the human major histocompatibility complex. Organization and evolutionary relationship of the DRβ genes
    • Andersson, G., Larhammer, D., Widmark, E., Servenius, B., Peterson, P. A., and Rask, L. Class II genes of the human major histocompatibility complex. Organization and evolutionary relationship of the DRβ genes. J Biol Chem 262: 8748-8758, 1987
    • (1987) J Biol Chem , vol.262 , pp. 8748-8758
    • Andersson, G.1    Larhammer, D.2    Widmark, E.3    Servenius, B.4    Peterson, P.A.5    Rask, L.6
  • 2
    • 0025324091 scopus 로고
    • Structure, function, and diversity of class I major histocompatibility complex molecules
    • Bjorkman, P. J. and Parham, P. Structure, function, and diversity of class I major histocompatibility complex molecules. Annu Rev Biochem 59: 253-258, 1990
    • (1990) Annu Rev Biochem , vol.59 , pp. 253-258
    • Bjorkman, P.J.1    Parham, P.2
  • 3
  • 4
    • 0025037836 scopus 로고
    • Transcription analysis, physical mapping and molecular characterization of a non-classical human leukocyte antigen class I gene
    • Chorney, M. J., Sawada, I., Gillespie, G. A., Srivastava, R., Pan, J., and Weissman, S. M. Transcription analysis, physical mapping and molecular characterization of a non-classical human leukocyte antigen class I gene. Mol Cell Biol 10: 243-253, 1990
    • (1990) Mol Cell Biol , vol.10 , pp. 243-253
    • Chorney, M.J.1    Sawada, I.2    Gillespie, G.A.3    Srivastava, R.4    Pan, J.5    Weissman, S.M.6
  • 5
    • 0025782235 scopus 로고
    • Early evolution of MHC polymorphism
    • Forsdyke, D. R. Early evolution of MHC polymorphism. J Theor Biol 150: 451-456, 1991
    • (1991) J Theor Biol , vol.150 , pp. 451-456
    • Forsdyke, D.R.1
  • 6
    • 0028232412 scopus 로고
    • Relationship of X chromosome dosage compensation to intracellular self/not-self discrimination: A resolution of Muller's paradox?
    • Forsdyke, D. R. Relationship of X chromosome dosage compensation to intracellular self/not-self discrimination: a resolution of Muller's paradox? J Theor Biol 167: 7-12, 1994
    • (1994) J Theor Biol , vol.167 , pp. 7-12
    • Forsdyke, D.R.1
  • 7
    • 0028979822 scopus 로고
    • A stem-loop kissing model for the initiation of recombination and the origin of introns
    • Forsdyke, D. R. A stem-loop kissing model for the initiation of recombination and the origin of introns. Mol Biol Evol 12: 949-958, 1995a
    • (1995) Mol Biol Evol , vol.12 , pp. 949-958
    • Forsdyke, D.R.1
  • 8
    • 0028818801 scopus 로고
    • 2 genes. An application of FORS-D analysis
    • 2 genes. An application of FORS-D analysis. Mol Biol Evol 12: 1157-1165, 1995b
    • (1995) Mol Biol Evol , vol.12 , pp. 1157-1165
    • Forsdyke, D.R.1
  • 9
    • 0028828990 scopus 로고
    • Relative roles of primary sequence and (G+C)% in determining the hierarchy of frequencies of complementary trinucleotide pairs in DNAs of different species
    • Forsdyke, D. R. Relative roles of primary sequence and (G+C)% in determining the hierarchy of frequencies of complementary trinucleotide pairs in DNAs of different species. J Mol Evol 41: 573-581, 1995c
    • (1995) J Mol Evol , vol.41 , pp. 573-581
    • Forsdyke, D.R.1
  • 10
    • 0029619270 scopus 로고
    • Reciprocal relationship between stem-loop potential and substitution density in retroviral quasispecies under positive Darwinian selection
    • Forsdyke, D. R. Reciprocal relationship between stem-loop potential and substitution density in retroviral quasispecies under positive Darwinian selection. J Mol Evol 41: 1022-1037, 1995d
    • (1995) J Mol Evol , vol.41 , pp. 1022-1037
    • Forsdyke, D.R.1
  • 11
    • 0000981224 scopus 로고
    • Entropy-driven protein self-aggregation as the basis for self/not-self discrimination in the crowded cytosol
    • Forsdyke, D. R. Entropy-driven protein self-aggregation as the basis for self/not-self discrimination in the crowded cytosol. J Biol Sys 3: 273-287, 1995e
    • (1995) J Biol Sys , vol.3 , pp. 273-287
    • Forsdyke, D.R.1
  • 12
    • 0029918528 scopus 로고    scopus 로고
    • Different biological species "broadcast" their DNAs at different (G+C)% "wavelengths"
    • in press
    • Forsdyke, D. R. Different biological species "broadcast" their DNAs at different (G+C)% "wavelengths". J Theor Biol, in press
    • J Theor Biol
    • Forsdyke, D.R.1
  • 13
    • 0025048186 scopus 로고
    • Nucleotide sequence of an HLA-A1 gene
    • Girdlestone, J. Nucleotide sequence of an HLA-A1 gene. Nucleic Acids Res 18: 6701, 1990
    • (1990) Nucleic Acids Res , vol.18 , pp. 6701
    • Girdlestone, J.1
  • 14
    • 0016436505 scopus 로고
    • Darwinian evolution in the geneology of haemoglobin
    • Goodman, M., Moore, G. W., and Matsuda, G. Darwinian evolution in the geneology of haemoglobin. Nature 253: 603-608, 1975
    • (1975) Nature , vol.253 , pp. 603-608
    • Goodman, M.1    Moore, G.W.2    Matsuda, G.3
  • 15
    • 0023188637 scopus 로고
    • Accelerated evolution in the reactive centre regions of serine protease inhibitors
    • Hill, R. E. and Hastie, N. D. Accelerated evolution in the reactive centre regions of serine protease inhibitors. Nature 326: 96-99, 1987
    • (1987) Nature , vol.326 , pp. 96-99
    • Hill, R.E.1    Hastie, N.D.2
  • 16
    • 0028909092 scopus 로고
    • Origin and evolution of HLA class I pseudogenes
    • Hughes, A. L. Origin and evolution of HLA class I pseudogenes. Mol Biol Evol 12:247-258, 1995
    • (1995) Mol Biol Evol , vol.12 , pp. 247-258
    • Hughes, A.L.1
  • 17
    • 0029088874 scopus 로고
    • Natural selection on the peptide-binding regions of major histocompatibility complex molecules
    • Hughes, A. L. and Hughes, M. K. Natural selection on the peptide-binding regions of major histocompatibility complex molecules. Immunogenetics 42: 233-243, 1995
    • (1995) Immunogenetics , vol.42 , pp. 233-243
    • Hughes, A.L.1    Hughes, M.K.2
  • 18
    • 0023764283 scopus 로고
    • Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection
    • Hughes, A. L. and Nei, M. Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335: 167-170, 1988
    • (1988) Nature , vol.335 , pp. 167-170
    • Hughes, A.L.1    Nei, M.2
  • 19
    • 0040771786 scopus 로고
    • Nucleotide substitution at major histocompatibility complex class II loci: Evidence for overdominant selection
    • Hughes, A. L. and Nei, M. Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection. Proc Natl Acad Sci USA 86: 958-962, 1989
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 958-962
    • Hughes, A.L.1    Nei, M.2
  • 21
    • 0025361553 scopus 로고
    • Predicting optimal and suboptimal secondary structure for RNA
    • Jaeger, J. A., Turner, J. H., and Zuker, M. Predicting optimal and suboptimal secondary structure for RNA. Meth Enzymol 183: 281-306, 1990
    • (1990) Meth Enzymol , vol.183 , pp. 281-306
    • Jaeger, J.A.1    Turner, J.H.2    Zuker, M.3
  • 23
    • 0023762569 scopus 로고
    • HLA-E, a novel class I gene expressed in resting lymphocytes
    • Koller, B. H., Geraghty, D. E., Shimizu, Y., DeMars, R., and Orr, H. T. HLA-E, a novel class I gene expressed in resting lymphocytes. J Immunol 141: 897-904, 1988
    • (1988) J Immunol , vol.141 , pp. 897-904
    • Koller, B.H.1    Geraghty, D.E.2    Shimizu, Y.3    Demars, R.4    Orr, H.T.5
  • 24
    • 0022375870 scopus 로고
    • Sequence of gene and cDNA encoding murine major histocompatibility complex class II gene Aβ2
    • Larhammer, D., Hammerling, U., Rask, L., and Peterson, P. A. Sequence of gene and cDNA encoding murine major histocompatibility complex class II gene Aβ2. J Biol Chem 260: 14111-14119, 1985
    • (1985) J Biol Chem , vol.260 , pp. 14111-14119
    • Larhammer, D.1    Hammerling, U.2    Rask, L.3    Peterson, P.A.4
  • 25
    • 0024381773 scopus 로고
    • A method for assessing the statistical significance of RNA folding
    • Le, S-Y. and Maizel, J. V. A method for assessing the statistical significance of RNA folding. J Theor Biol 138: 495-510, 1989
    • (1989) J Theor Biol , vol.138 , pp. 495-510
    • Le, S.-Y.1    Maizel, J.V.2
  • 27
    • 0026636157 scopus 로고
    • HLA-J, a second inactivated class I HLA gene related to HLA-G and HLA-A
    • Messer, G., Zemmour, J., Orr, H. T., Parham, P., Weiss, E. H., and Girdlestone, J. HLA-J, a second inactivated class I HLA gene related to HLA-G and HLA-A. J Immunol 148: 4043-4053, 1992
    • (1992) J Immunol , vol.148 , pp. 4043-4053
    • Messer, G.1    Zemmour, J.2    Orr, H.T.3    Parham, P.4    Weiss, E.H.5    Girdlestone, J.6
  • 28
    • 0021674038 scopus 로고
    • Isoenzymes, isoproteins and introns
    • Milner-White, E. J. Isoenzymes, isoproteins and introns. Trends Biochem Sci 9: 517-519, 1984
    • (1984) Trends Biochem Sci , vol.9 , pp. 517-519
    • Milner-White, E.J.1
  • 29
    • 0028932702 scopus 로고
    • Frequencies of synonymous substitutions in mammals are gene-specific and correlate with frequencies of non-synonymous substitutions
    • Mouchiroud, D., Gautier, C., and Bernardi, G. Frequencies of synonymous substitutions in mammals are gene-specific and correlate with frequencies of non-synonymous substitutions. J Mol Evol 40: 107-113, 1995
    • (1995) J Mol Evol , vol.40 , pp. 107-113
    • Mouchiroud, D.1    Gautier, C.2    Bernardi, G.3
  • 31
    • 0029060850 scopus 로고
    • SSCP primer design based on single-strand DNA structure predicted by a DNA folding program
    • Nielsen, D. A., Novoradovsky, A., and Goldman, D. SSCP primer design based on single-strand DNA structure predicted by a DNA folding program. Nucleic Acids Res 23: 2287-2291, 1995
    • (1995) Nucleic Acids Res , vol.23 , pp. 2287-2291
    • Nielsen, D.A.1    Novoradovsky, A.2    Goldman, D.3
  • 32
    • 0028034301 scopus 로고
    • Further examples of evolution by gene duplication revealed through DNA sequence comparisons
    • Ohta, T. Further examples of evolution by gene duplication revealed through DNA sequence comparisons. Genetics 138: 1331-1337, 1994
    • (1994) Genetics , vol.138 , pp. 1331-1337
    • Ohta, T.1
  • 33
    • 0029004879 scopus 로고
    • Gene conversion vs point mutation in generating variability at the antigen recognition site of major histocompatibility complex loci
    • Ohta, T. Gene conversion vs point mutation in generating variability at the antigen recognition site of major histocompatibility complex loci. J Mol Evol 41: 115-119, 1995
    • (1995) J Mol Evol , vol.41 , pp. 115-119
    • Ohta, T.1
  • 34
    • 0025149516 scopus 로고
    • Polymorphism in the human class I MHC locus HLA-E in Japanese
    • Ohya, K., Kondo, K., and Mizuno, S. Polymorphism in the human class I MHC locus HLA-E in Japanese. Immunogenetics 32: 205-209, 1990
    • (1990) Immunogenetics , vol.32 , pp. 205-209
    • Ohya, K.1    Kondo, K.2    Mizuno, S.3
  • 35
    • 0001254180 scopus 로고
    • Homologous DNA interactions in the evolution of gene and chromosome structure
    • Radman, M., Wagner, R., and Kricker, M. C. Homologous DNA interactions in the evolution of gene and chromosome structure. Genome Anal 7: 139-154, 1993
    • (1993) Genome Anal , vol.7 , pp. 139-154
    • Radman, M.1    Wagner, R.2    Kricker, M.C.3
  • 37
    • 0021109058 scopus 로고
    • Organization of the transcriptional unit of a human class II histocompatibility antigen: HLA-DR heavy chain
    • Schamboeck, A., Korman, A. J., Kamb, A., and Strominger, J. L. Organization of the transcriptional unit of a human class II histocompatibility antigen: HLA-DR heavy chain. Nucleic Acids Res 11: 8663-8675, 1983
    • (1983) Nucleic Acids Res , vol.11 , pp. 8663-8675
    • Schamboeck, A.1    Korman, A.J.2    Kamb, A.3    Strominger, J.L.4
  • 38
    • 0025668584 scopus 로고
    • Cloning, structural analysis, and expression of the human slow twitch skeletal muscle/cardiac troponin C gene
    • Schreier, T., Kedes, L., and Gahlmann, R. Cloning, structural analysis, and expression of the human slow twitch skeletal muscle/cardiac troponin C gene. J Biol Chem 265: 21247-21253, 1990
    • (1990) J Biol Chem , vol.265 , pp. 21247-21253
    • Schreier, T.1    Kedes, L.2    Gahlmann, R.3
  • 39
    • 0027312156 scopus 로고
    • Rate of amino acid change in the envelope protein correlates with pathogenicity of primate lentiviruses
    • Scpaer, E. G. and Mullins, J. I. Rate of amino acid change in the envelope protein correlates with pathogenicity of primate lentiviruses. J Mol Evol 37: 57-65, 1993
    • (1993) J Mol Evol , vol.37 , pp. 57-65
    • Scpaer, E.G.1    Mullins, J.I.2
  • 41
    • 0028906959 scopus 로고
    • Sequence evolution of the porB gene of Neisseria gonorrhoeae and Neisseria meningitidis: Evidence of positive Darwinian selection
    • Smith, N. H., Maynard Smith, J., and Spratt, B. G. Sequence evolution of the porB gene of Neisseria gonorrhoeae and Neisseria meningitidis: evidence of positive Darwinian selection. Mol Biol Evol 12: 363-370, 1995
    • (1995) Mol Biol Evol , vol.12 , pp. 363-370
    • Smith, N.H.1    Maynard Smith, J.2    Spratt, B.G.3
  • 42
    • 0024392448 scopus 로고
    • Positive Darwinian selection observed at the variable region genes of immunoglobulins
    • Tanaka, T. and Nei, M. Positive Darwinian selection observed at the variable region genes of immunoglobulins. Mol Biol Evol 6: 447-459, 1989
    • (1989) Mol Biol Evol , vol.6 , pp. 447-459
    • Tanaka, T.1    Nei, M.2
  • 43
    • 0024806949 scopus 로고
    • Computer prediction of RNA secondary structure
    • Zuker, M. Computer prediction of RNA secondary structure. Meth Enzym 180: 262-289, 1989
    • (1989) Meth Enzym , vol.180 , pp. 262-289
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.