Functional analysis of iceA1, a CATG-recognizing restriction endonuclease gene in Helicobacter pylori

Nucleic Acids Research

Volumn 30, Issue 17, 2002, Pages 3839-3847

  Xu, Qing ^a   Morgan, R D ^b   Roberts, R J ^b   Xu, S Y ^b   Van Doorn, L J ^c   Donahue, J P ^a   Miller, G G ^a   Blaser, Martin J ^a,d  

^a VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b NEW ENGLAND BIOLABS   (United States)

^c Delft Diagnostic Laboratory   (Netherlands)

^d NEW YORK UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; CYTOSINE; GUANINE; RESTRICTION ENDONUCLEASE; THYMINE;

ARTICLE; BACTERIAL STRAIN; CONTROLLED STUDY; DNA REPAIR; ENZYME ACTIVITY; ESCHERICHIA COLI; FRAMESHIFT MUTATION; GENE FUNCTION; GENE OVEREXPRESSION; GENE SEQUENCE; GENETIC CODE; HELICOBACTER PYLORI; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; RESTRICTION MAPPING; SEQUENCE ANALYSIS; STRAIN DIFFERENCE;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; HELICOBACTER; HELICOBACTER PYLORI; NEGIBACTERIA; NEISSERIA; NEISSERIA LACTAMICA; PROKARYOTA;

EID: 0036713172     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkf504     Document Type: Article

References (50)

1. Unidentified curved bacilli in the stomach of patients with gastritis and peptic ulceration
2. Helicobacter pylori infection and gastric carcinoma in a population of Japanese-Americans in Hawaii
3. Helicobacter pylori infection and gastric lymphoma
4. Helicobacter pylori infection and the risk for duodenal and gastric ulceration
5. Helicobacter pylori, individual host specificity and human disease
6. Prevalence of Helicobacter pylori infection and histologic gastritis in asymptomatic persons
7. Helicobacter pylori genetic diversity and risk of human disease
8. Mosaicism in vacuolating cytotoxin alleles of Helicobacter pylori. Association of specific vacA types with cytotoxin production and peptic ulceration
9. Characterization of and human serologic response to proteins in Helicobacter pylori broth culture supernatants with vacuolizing cytotoxin activity
10. Cloning and expression of a high molecular weight major antigen of Helicobacter pylori: Evidence of linkage to cytotoxin production
11. Molecular characterization of the 128 kDa immunodominant antigen of Helicobacter pylori association with cytotoxicity and duodenal ulcer
12. Adherence to gastric epithelial cells induces expression of a Helicobacter pylori gene, iceA, that is associated with clinical outcome
13. Clinical relevance of the cagA, vacA and iceA status of Helicobacter pylori
14. Sequence analysis and clinical significance of the iceA gene from Helicobacter pylori strains in Japan
15. Molecular cloning and expression of the NlallI restriction-modification system in E. coli
16. The Hellcobacter pylori genome is modified at CATG by the product of hpyIM
17. Cloning and characterization of two tandemly arranged DNA methylase genes of N. lactamica: An adenine-specific M.NlaIII and a cytosine-type methylase
18. Promoters of the CATG-specific methyltransferase gene hpyIM differ between iceA1 and iceA2 Helicobacter pylori strains
19. The complete genome sequence of the gastric pathogen Helicobacter pylori
20. Genetic organization and heterogeneity of the iceA locus of Helicobacter pylori
21. Basic local alignment search tool
22. Vectors for selective expression of cloned DNAs by T7 RNA polymerase
23. Identification of type II restriction and modification systems in Helicobacter pylori reveals their substantial diversity among strains
24. Analysis of iceA1 transcripts in Helicobacter pylori
25. Antibiotic resistance mutations in the chloroplast 16S and 23S rRNA genes of Chlamydomonas reinhardtii: Correlation of genetic and physical maps of the chloroplast genome
26. Effect of different mutations in ribosomal protein S5 of Escherichia coli on translational fidelity
27. Antibiotic resistance mutations in 16S and 23S ribosomal RNA gene of Escherichia coli
28. Spontaneous mutation in the Escherichia coli lacI gene
29. DNA sequence analysis of spontaneous mutagenesis in Saccharomyces cerevisiae
30. Slipped-strand mispairing: Mechanism for DNA sequence evolution
31. The simple sequence contingency loci of Haemophilus influenzae and Neisseria meningitidis
32. Hypermutability of homonucleotide runs in mismatch repair and DNA polymerase proofreading yeast mutants
33. Genetic instability with monotonous runs of CpG sequences in Escherichia coli
34. Role of proofreading and mismatch repair in maintaining the stability of nucleotide repeat in DNA
35. The length of a tetranucleotide repeat tract in Haemophilus influenzae determines the phase variation rate of a gene with homology to type III DNA methyltransferases
36. Lewis antigens in Helicobacter pylori: Biosynthesis and phase variation
37. Phase variation in Helicobacter pylori lipopolysaccharide due to changes in lengths of poly(C) tracts in α3-fucosyltransferase genes
38. Phase variation in Helicobacter pylori lipopolysaccharide
39. Genomic sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori
40. Simple sequence repeats in the Helicobacter pylori genome
41. DNA repeats identify novel virulence genes in Haemophilus influenzae
42. Repeat-associated phase variable genes in the complete genome sequence of Neisseria meningitidis strain MC58
43. A family of phase-variable restriction enzymes with differing specificities generated by high-frequency gene rearrangements
44. Variation in the surface proteins and restriction enzyme systems of Mycoplasma pulmonis in the respiratory tract of infected rats
45. Specificities of eleven different DNA methyltransferases of Helicobacter pylori strain 26695
46. Comparative genomics of the restriction-modification systems in Helicobacter pylori
47. Diversity of restriction-modification gene homologues in Helicobacter pylori
48. Purification of the novel endonuclease, Hpy188I, and cloning of its restriction-modification genes reveal evidence of its horizontal transfer to the Helicobacter pylori genome
49. Restriction-modification system differences in Helicobacter pylori are a barrier to interstrain plasmid transfer