Polymorphic Alu insertions and the Asian origin of native American populations

Human Biology

Volumn 70, Issue 1, 1998, Pages 23-39

  Novick, Gabriel E ^a   Novick, Corina C ^a   Yunis, Juan ^b   Yunis, Emilio ^b   Antunez De Mayolo, Pamela ^a   Scheer, W Douglas ^c   Deininger, Prescott L ^c,d   Stoneking, Mark ^e   York, Daniel S ^f   Batzer, Mark A ^c   Herrera, Rene J ^a  

^a FLORIDA INTERNATIONAL UNIVERSITY   (United States)

^b UNIVERSIDAD NACIONAL DE COLOMBIA   (Colombia)

^c LOUISIANA STATE UNIV MEDICAL CENTER   (United States)

^d OCHSNER MEDICAL CENTER   (United States)

^e PENNSYLVANIA STATE UNIVERSITY   (United States)

^f BARRY UNIVERSITY   (United States)

Author keywords

Alu Insertion; Native Americans; Peopling of the Americas

Indexed keywords

DNA;

AMERICAN INDIAN; ARTICLE; ASIA; CHINA; ETHNOLOGY; GENE FREQUENCY; GENETIC POLYMORPHISM; GENETICS; HUMAN; NUCLEOTIDE REPEAT; STATISTICAL MODEL; WESTERN HEMISPHERE;

AMERICAS; ASIA; CHINA; DNA; GENE FREQUENCY; HUMANS; INDIANS, NORTH AMERICAN; LIKELIHOOD FUNCTIONS; LOGISTIC MODELS; POLYMORPHISM, GENETIC; REPETITIVE SEQUENCES, NUCLEIC ACID;

EID: 0032006161     PISSN: 00187143     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (42)

1. Ausabel, F.M., R. Brent, U.E. Kingston et al. 1987. Current Protocols in Molecular Biology. New York: Wiley.
2. Bailey, A.D., and C.K.J. Shen. 1993. Sequential insertion of Alu family repeats into specific genomic sites of higher primates. Proc. Natl. Acad. Sci. USA 90:7205-7209.
3. Ballinger, S.W., T.G. Schurr, A. Torroni et al. 1992. Southeast Asian mitochondrial DNA analysis reveals genetic continuity of ancient Mongoloid migrations. Genetics 130:139-152.
4. Batzer, M.A., and P.L. Deininger. 1991. A human-specific subfamily of Alu sequences. Genomics 9:481-487.
5. Batzer, M.A., V.A. Gudi, J.C. Mena et al. 1991. Amplification dynamics of human-specific (HS) Alu family members. Nucleic Acids Res. 19:3619-3623.
6. Batzer, M.A., G.E. Kilroy, P.E. Richard et al. 1990. Structure and variability of recently inserted Alu family members. Nucleic Acids Res. 18:6793-6798.
7. Batzer, M.A., M. Stoneking, M. Algeria-Hartman et al. 1994. African origin of human-specific polymorphic Alu insertions. Proc. Natl. Acad. Sci. USA 91:12,288-12,292.
8. Cavalli-Sforza, L.L., and A.W.F. Edwards. 1967. Phylogenetic analysis: Models and estimation procedures. Evolution 32:550-570.
9. Cavalli-Sforza, L.L., P. Menozzi, and A. Piazza. 1994. The History and Geography of Human Genes. Princeton, NJ: Princeton University Press.
10. Daniels, G.R., and P.L. Deininger. 1985. Integration site preferences of the Alu family and similar repetitive DNA sequences. Nucleic Acids Res. 13:8939-8954.
11. Deininger, P.L., and M.A. Batzer. 1993. Evolution of retroposons. In Evolutionary Biology, M.K. Hect, R.J. MacIntyre, and M.T. Clegg, eds. New York: Plenum Press, 157-196.
12. Deininger, P.L., and G.R. Daniels. 1986. The recent evolution of mammalian repetitive elements. Trends Genet. 2:76-80.
13. Deininger, P.L., and V.K. Slagel. 1988. Recently amplified Alu family members share a common parental Alu sequence. Molec. Cell. Biol. 8:4566-4569.
14. Deininger, P.L., M.A. Batzer, C. Hutchinson III et al. 1992. Master genes in mammalian repetitive DNA amplification. Trends Genet. 8:307-312.
15. Fladmark, K.R. 1983. Early Man in the New World. Beverly Hills, CA: Sage Publications.
16. Greenberg, J.H. 1987. Language in the Americas. Stanford, CA: Stanford University Press.
17. Greenberg, J.H., C.G. Turner II, and S.L. Zegura. 1986. The settlement of the Americas: Comparison of the linguistic, dental, and genetic evidence. Curr. Anthropol. 4:477-497.
18. Harpending, H.C., and R.H. Ward. 1982. Chemical systematics and human populations. In Biochemical Aspects of Evolutionary Biology, M. Nitecki, ed. Chicago, IL: University of Chicago Press, 213-252.
19. Kass, D.H., C. Aleman, M.A. Batzer et al. 1994. A human-specific Alu insertion resulting in a factor XIIB gene restriction fragment length polymorphism. Genetica 94:1-8.
20. Kidd, K.K., and J.R. Kidd. 1996. Nuclear prospective on human evolution. In Molecular Biology and Human Diversity, A.J. Boyce and C.G.S. Mascie-Taylor, eds. London, England: Cambridge University Press, 242-264.
21. Kidd, J.R., K.K. Kidd, and K.M. Weiss. 1993. Human genome diversity initiative. Hum. Biol. 65:1-6.
22. Kidd, J.R., A.J. Pakstis, and K.K. Kidd. 1993. Global levels of DNA variation. In Proceedings of the 4th International Symposium on Human Identification. Madison, WI: Promega Corp., 21-30.
23. Knight, A., M.A. Batzer, M. Stoneking et al. 1996. DNA sequence of Alu elements indicate a recent single origin for modern humans. Proc. Natl. Acad. Sci. USA 93:4360-4364.
24. Matera, A.G., U. Hellmann, M.F. Hintz et al. 1990. Recently transposed Alu repeats result from multiple source genes. Nucleic Acids Res. 18:6019-6023.
25. Nei, M. 1972. Genetic distance between populations. Am. Natur. 106:283-292.
26. Nei, M. 1987. Molecular Evolutionary Genetics. New York: Columbia University Press.
27. Novick, G.E., M.A. Batzer, P.L. Deininger et al. 1996. The mobile genetic element Alu in the human genome. BioScience 46:32-41.
28. Novick, G.E., C.M. Mendez, C.C. Novick et al. 1994. The use of polymorphic Alu insertions as a new methodological alternative in human paternity testing and child identification. Int. Pediatr. 9:60-68.
29. Novick, G.E., C.C. Novick, E. Yunis et al. 1995. Polymorphic human-specific Alu insertions as markers for human identification. Electrophoresis 16:1596-1601.
30. O'Rourke, D.H., A. Mobarry, and B.K. Suarez. 1992. Patterns of genetic variation in native Americans. Hum. Biol. 64:417-434.
31. Reynolds, J.B., B.S. Weir, and C.C. Cockerham. 1983. Estimation of the coancestry coefficient: Basis for a short-term genetic distance. Genetics 105:767-779.
32. Rogers, R.A., L.A. Rogers, R.S. Hoffmann et al. 1991. Native American biological diversity and the biogeographic influence of Ice Age refugia. J. Biogeogr. 18:623-630.
33. Sawada, I., and C.W. Schmid. 1986. Primate evolution of the globin gene cluster and its Alu-like repeats. J. Molec. Biol. 192:693-703.
34. Schanfield, M.S. 1992. Allotypes (GM and KM) indicate multiple founding populations of native Americans: Evidence of at least four migrations to the new world. Hum. Biol. 64:381-402.
35. Shurr, T.G., S.W. Ballinger, Y.-Y. Gan et al. 1990. Ameridian mitochondrial DNAs have rare Asian mutations at high frequencies suggesting they derived from four primary maternal lineages. Am. J. Hum. Genet. 46:613-623.
36. Tiret, L., B. Rigat, S. Visvikis et al. 1992. Evidence, from combined segregation and linkage analysis, that a variant of the angiotensin I-converting enzyme (ACE) gene controls plasma ACE levels. Am. J. Hum. Genet. 51:197-205.
37. Torroni, A., Y.-S. Chen, O. Semino et al. 1994. DNA and Y-chromosome polymorphisms in four native American populations from southern Mexico. Am. J. Hum. Genet. 54:303-318.
38. Torroni, A., T.G. Schurr, C.-C. Yang et al. 1992. Native American mitochondrial DNA analysis indicates that the Amerind and the Nadene populations were founded by two independent migrations. Genetics 130:153-162.
39. Ullu, E., and C. Tschudi. 1984. Alu sequences are processed 7SL RNA genes. Nature 312:171-172.
40. Wallace, D.C., and A. Torroni. 1992. American Indian prehistory as written in the mitochondrial DNA: A review. Hum. Biol. 64:403-416.
41. Wallace, M.R., L.B. Anderson, A.M. Saulino et al. 1991. A de novo Alu insertion results in neurofibromatosis type 1. Nature 353:864-866.
42. Yunis, J., H. Ossa, M. Salazar et al. 1994. Major histocompatibility complex class II alleles and haplotypes and blood groups of four Amerindian tribes in north Colombia. Hum. Immunol. 41:248-258.