Automated assignment of NOESY NMR spectra using a knowledge based method (KNOWNOE)

Journal of Biomolecular NMR

Volumn 23, Issue 4, 2002, Pages 271-287

  Gronwald, Wolfram ^a   Moussa, Sherif ^a   Elsner, Ralph ^a   Jung, Astrid ^a   Ganslmeier, Bernhard ^a   Trenner, Jochen ^a   Kremer, Werner ^a   Neidig, Klaus Peter ^b   Kalbitzer, Hans Robert ^a  

^a UNIVERSITY OF REGENSBURG   (Germany)

^b Bruker Analytik GmbH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

COLD SHOCK PROTEIN; PROTON; BACTERIAL PROTEIN; PROTEIN;

ALGORITHM; ARTICLE; AUTOMATION; BAYES THEOREM; CHEMICAL REACTION; COMPUTER PROGRAM; CONTROLLED STUDY; DATA ANALYSIS; MACROMOLECULE; MATHEMATICAL COMPUTING; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; NUCLEAR OVERHAUSER EFFECT; PRIORITY JOURNAL; PROBABILITY; PROTEIN STRUCTURE; STATISTICAL ANALYSIS; STRUCTURE ANALYSIS; THERMOTOGA MARITIMA; AMINO ACID SEQUENCE; ARTIFICIAL INTELLIGENCE; CHEMISTRY; METHODOLOGY; PROTEIN CONFORMATION; PROTEIN DATABASE;

THERMOTOGA; THERMOTOGA MARITIMA;

ALGORITHMS; AMINO ACID SEQUENCE; ARTIFICIAL INTELLIGENCE; BACTERIAL PROTEINS; DATABASES, PROTEIN; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN CONFORMATION; PROTEINS; SOFTWARE;

EID: 0036700835     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1020279503261     Document Type: Article

References (38)

1. Antz, C., Neidig, K.-P. and Kalbitzer, H.R. (1995) J. Biomol. NMR, 5, 287-296.
2. Bartels, C., Güntert, P., Billeter, M. and Wüthrich, K. (1997) J. Comp. Chem., 18, 139-149.
3. Brünger, A.T., Adams, P.D., Clore, G.M., DeLano, W.L., Gros, P., Grosse-Kunstleve, R.W,, Jiang, J.-S,, Kuszewski, J., Nilges, M., Pannu, N.S., Read, R.J., Rice, L.M,, Simonson, T. and Warren, G.L. (1998) Acta Cryst., D54, 905-924.
4. Clore, G.M. and Gronenborn, A.M. (1991) Science, 252, 1390-1399.
5. Cornfield, J. (1967) Rev. Int. Statist. Inst., 35, 34-49.
6. Cornfield, J. (1969) Biometrics, 25, 617-642.
7. Duggan, B.M., Legge, G.B., Dyson, H.J. and Wright, P.E. (2001) J. Biomol. NMR, 19, 321-329.
8. Ferrige, A.G. and Lindon, J.C. (1978) J. Magn. Reson., 31, 337-340.
9. Fesik, S.W. and Zuiderweg, E.R.P. (1988) J. Magn. Reson., 78, 588-593.
10. Geyer, M., Herrmann, C., Wohlgemuth, S., Wittinghofer, A. and Kalbitzer, H.R. (1997) Nat. Struct. Biol., 4, 694-699.
11. Geyer, M., Neidig, K.-P. and Kalbitzer, H.R. (1995) J. Magn. Reson. B, 109, 31-38.
12. Glaser, S. and Kalbitzer, H.R. (1986) J. Magn. Reson., 68, 350-354.
13. Görler, A. and Kalbitzer, H.R. (1997) J. Magn. Reson., 124, 177-188.
14. Görler, A., Gronwald, W., Neidig, K.-P. and Kalbitzer, H.R. (1999) J. Magn. Reson., 137, 39-45.
15. Gronwald, W., Kirchhöfer, R., Görler, A., Kremer, W., Ganslmeier, B., Neidig, K.-P. and Kalbitzer, H.R. (2000) J. Biomol. NMR, 17, 137-151.
16. Harrieder, S. (1998) Diploma Thesis, University of Regensburg, Regensburg.
17. Huang, L., Weng, X.W., Hofer, F., Martin, G.S. and Kim, S.H. (1997) Nat. Struct Biol., 4, 609-615.
18. Jeener, J., Meier, B.H., Bachmann, P. and Ernst, R. R. (1979) J. Chem. Phys., 71, 4546-4553.
19. Koradi, R., Billeter, M., Engeli, M., Güntert, P. and Wüthrich, K. (1998) J. Magn. Reson., 135, 288-297.
20. Koradi, R., Billeter, M. and Wüthrich, K. (1996) J. Mol. Graphics, 14, 51-55.
21. Kremer, W., Harrieder, S., Geyer, M., Gronwald, W., Welker, C., Schuler, B., Jaenicke, R. and Kalbitzer, H.R. (2001) Eur. J. Biochem., 268, 2527-2539.
22. Laskowski, R.A., Rullmann, J.A., MacArthur, M.W., Kaptein, R. and Thornton, J.M. (1996). J. Biomol. NMR, 8, 477-486.
23. Marion, D. and Wüthrich, K. (1983) Biochem. Biophys. Res. Comm., 113, 967-974.
24. Mitschang, L., Neidig, K.-P. and Kalbitzer, H.R. (1990) J. Magn. Reson., 90, 359-362.
25. Moussa, S. (2001) Ph.D. Thesis, University of Regensburg, Regensburg.
26. Mumenthaler, C. and Braun, W. (1995) J. Mol. Biol., 254, 465-480.
27. Nagayama, K. and Wüthrich, K. (1981) Eur. J. Biochem., 114, 365-374.
28. Neidig, K.-P., Geyer, M., Görler, A., Antz, C., Saffrich, R., Beneicke, W. and Kalbitzer, H.R. (1995) J. Biomol. NMR, 6, 255-270.
29. Neidig, K.-P., Saffrich, R., Lorenz, M. and Kalbitzer, H.R. (1990) J. Magn. Reson., 89, 543-552.
30. Nilges, M. (1995) J. Mol. Biol., 245, 645-660.
31. Nilges, M. and O'Donoghue, S.I. (1998) Prog. NMR Spectrosc., 32, 107-139.
32. Saffrich, R., Beneicke, W., Neidig, K.-P. and Kalbitzer, H.R. (1993) J. Magn. Reson. B, 101, 304-308.
33. Schulte, A.C., Görler, A., Antz, C., Neidig, K.-P. and Kalbitzer, H.R. (1997) J. Magn. Reson., 129, 165-172.
34. Subramaniam, S., Teheng, D.K. and Fenton, J.M. (1996) ISMB, 96, 218-229.
35. Wagner, G. and Wüthrich, K. (1982) J. Mol. Biol., 155, 347-366.
36. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, John Wiley, New York.
37. Wüthrich, K., Wider, G., Wagner, G. and Braun, W. (1982) J. Mol. Biol., 155, 311-319.
38. Xu, Y., Wu, J., Gorenstein, D. and Braun, W. (1999) J. Magn. Reson., 136, 76-85.