SmpB functions in various steps of trans-translation

Nucleic Acids Research

Volumn 30, Issue 7, 2002, Pages 1620-1629

  Hanawa Suetsugu, Kyoko ^a,b   Takagi, Mitsuru ^a   Inokuchi, Hachiro ^c   Himeno, Hyouta ^a,b   Muto, Akira ^a,b  

^a HIROSAKI UNIVERSITY   (Japan)

^b IWATE UNIVERSITY   (Japan)

^c KYOTO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE TRANSFER RNA LIGASE; HISTIDINE; MESSENGER RNA; PHENYLALANINE; RNA; RNA BINDING PROTEIN; SMALL BASIC PROTEIN B; TRANSFER RNA; UNCLASSIFIED DRUG; URIDINE;

AMINOACYLATION; CONTROLLED STUDY; ESCHERICHIA COLI; GENE DELETION; GENE MUTATION; IN VITRO STUDY; IN VIVO STUDY; NONHUMAN; PEPTIDE SYNTHESIS; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DEPLETION; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN PURIFICATION; REVIEW; RIBOSOME; RNA BINDING; RNA DEGRADATION; RNA SEQUENCE; RNA TRANSLATION;

ESCHERICHIA COLI; NEGIBACTERIA;

EID: 0036529539     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/30.7.1620     Document Type: Review

References (46)

1. The tmRNA website
2. (tmRDB) tmRNA database
3. The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue
4. tRNA-like structures in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis
5. A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli
6. Presence and location of modified nucleotides in Escherichia coli tmRNA: Structural mimicry with tRNA acceptor branches
7. Structural organization of Escherichia coli tmRNA
8. Probing the structure of the Escherichia coli 10Sa RNA (tmRNA)
9. Phylogenetic analysis of tmRNA secondary structures
10. A nickel complex cleaves uridines in folded RNA structures: Application to E. coli tmRNA and related engineered molecules
11. 3′ Exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli
12. Aminoacylated tmRNA from Escherichia coli interacts with procaryotic elongation factor Tu
13. Kinetic parameters for tmRNA binding to alanyl-tRNA synthetase and elongation factor Tu from Escherichia coli
14. C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide
15. Role of a peptide tagging system in degradation of protein synthesized from messenger RNA
16. SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity
17. SsrA-mediated tagging and proteolysis of LacI and its role in the regulation of lac operon
18. In vitro trans translation mediated by alanine-charged 10Sa RNA
19. Identification of endogenous SsrA-tagging proteins reveals tagging at positions corresponding to stop codons
20. Structure and function of bacterial 10Sa RNA: Trans-translation system
21. A bacterial RNA that functions as both a tRNA and an mRNA
22. Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability
23. Requirement of transfer-messenger RNA (tmRNA) for the growth of Bacillus subtilis under stresses
24. Amino acid acceptor identity switch of Escherichia coli tmRNA from alanine to histidine in vitro
25. 10Sa RNA is associated with 70S ribosome particles in Escherichia coli
26. Interaction of 10Sa RNA with ribosomes in Escherichia coli
27. Resuming translation on tmRNA: A unique mode of determining a reading frame
28. Determinants on tmRNA for initiating efficient and precise trans-translation: Some mutations upstream of the tag-encoding sequence of Escherichia coli tmRNA shift the initiation point of trans-translation in vitro
29. Functional and structural analysis of a pseudoknot upstream of the tag-encoded sequence in E. coli tmRNA
30. An NMR and mutational analysis of an RNA pseudoknot of E. coli tmRNA involved in trans-translation
31. SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA)
32. Protein factors associated with the SsrA-SmpB tagging and ribosome rescue complex
33. The physical map of the whole E. coli chromosome: Application of a new strategy for rapid analysis and sorting of a large genomic library
34. Batchwise purification of specific tRNAs by a solid-phase DNA probe
35. Ala
36. Importance of the conserved nucleotides around the tRNA-like structure of Escherichia coli transfer-messenger RNA for protein tagging
37. Three of four pseudoknots in tmRNA are interchangeable and are substitutable with single-stranded RNAs
38. Three-dimensional folding of the tRNA-like domain of Escherichia coli tmRNA
39. Changing the identify of a tRNA by introducing a G-U wobble pair near the 3′ acceptor end
40. A simple structural feature is a major determinant of the identity of a transfer RNA
41. Aminoacylation of alanine minihelices. 'Discriminator' base modulates transition state of single turnover reaction
42. Mapping contacts between Escherichia coli alanyl-tRNA synthetase and 2′ hydroxyls using a complete tRNA molecule
43. Evidence for interaction of an aminoacyl transfer RNA synthetase with a region important for the identity of its cognate transfer RNA
44. Binding and cross-linking of tmRNA to ribosomal protein S1, on and off the Escherichia coli ribosome
45. The effect of Escherichia coli ribosomal protein S1 on the translational specificity of bacterial ribosomes
46. Ala recognizes transfer-messenger RNA with specificity; a functional complex prior to entering the ribosome?