메뉴 건너뛰기




Volumn 268, Issue 2, 2002, Pages 214-222

Structural variation in the Waxy gene and differentiation in foxtail millet [Setaria italica (L.) P. Beauv.]: Implications for multiple origins of the waxy phenotype

Author keywords

Crop evolution; Foxtail millet; Insertion sequence; Setaria italica; Waxy gene

Indexed keywords

ARTICLE; BIOGENESIS; GENE INSERTION; GENE SEQUENCE; GENE STRUCTURE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; INTRON; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SETARIA; SETARIA ITALICA; SOUTHERN BLOTTING; STRUCTURAL HOMOLOGY; WILD TYPE;

EID: 0036460392     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-002-0728-8     Document Type: Article
Times cited : (70)

References (29)
  • 1
    • 0032189134 scopus 로고    scopus 로고
    • Use of alternate splice sites in granule-bound starch synthase mRNA from low-amylose rice varieties
    • Bligh HFJ, Larkin PD, Roach PS, Jones CA, Fu H, Park WD (1998) Use of alternate splice sites in granule-bound starch synthase mRNA from low-amylose rice varieties. Plant Mol Biol 38:407-415
    • (1998) Plant Mol Biol , vol.38 , pp. 407-415
    • Bligh, H.F.J.1    Larkin, P.D.2    Roach, P.S.3    Jones, C.A.4    Fu, H.5    Park, W.D.6
  • 2
    • 0026940433 scopus 로고
    • Tourist: A large family of small inverted repeat elements frequently associated with maize genes
    • Bureau TE, Wessler SR (1992) Tourist: A large family of small inverted repeat elements frequently associated with maize genes. Plant Cell 4:1283-1294
    • (1992) Plant Cell , vol.4 , pp. 1283-1294
    • Bureau, T.E.1    Wessler, S.R.2
  • 3
    • 0028053180 scopus 로고
    • Mobile inverted-repeat elements of the Tourist family are associated with the genes of many cereal grasses
    • Bureau TE, Wessler SR (1994) Mobile inverted-repeat elements of the Tourist family are associated with the genes of many cereal grasses. Proc Natl Acad Sci USA 91:1411-1415
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 1411-1415
    • Bureau, T.E.1    Wessler, S.R.2
  • 4
    • 0032077096 scopus 로고    scopus 로고
    • Aberrant splicing of intron 1 leads to heterogeneous 5′ UTR and decreased expression of waxy gene in rice cultivars of intermediate amylose content
    • Cai YL, Wang ZY, Xing YY, Zhang JL, Hong MM (1998) Aberrant splicing of intron 1 leads to heterogeneous 5′ UTR and decreased expression of waxy gene in rice cultivars of intermediate amylose content. Plant J 14:459-465
    • (1998) Plant J , vol.14 , pp. 459-465
    • Cai, Y.L.1    Wang, Z.Y.2    Xing, Y.Y.3    Zhang, J.L.4    Hong, M.M.5
  • 5
    • 0026178941 scopus 로고
    • Nucleotide sequence of a wheat (Triticum aestivum L.) cDNA clone encoding the waxy protein
    • Clark JR, Robertson M, Ainsworth CC (1991) Nucleotide sequence of a wheat (Triticum aestivum L.) cDNA clone encoding the waxy protein. Plant Mol Biol 16:1099-1101
    • (1991) Plant Mol Biol , vol.16 , pp. 1099-1101
    • Clark, J.R.1    Robertson, M.2    Ainsworth, C.C.3
  • 6
    • 0036934403 scopus 로고    scopus 로고
    • The insertion/deletion polymorphisms in the waxy gene of barley genetic resources from East Asia
    • Domon E, Fujita M, Ishikawa N (2002) The insertion/deletion polymorphisms in the waxy gene of barley genetic resources from East Asia. Theor Appl Genet 104:132-138
    • (2002) Theor Appl Genet , vol.104 , pp. 132-138
    • Domon, E.1    Fujita, M.2    Ishikawa, N.3
  • 7
    • 0030733037 scopus 로고    scopus 로고
    • Ribosomal DNA variation in foxtail millet and a survey of variation from Europe and Asia
    • Fukunaga K, Domon E, Kawase M (1997) Ribosomal DNA variation in foxtail millet and a survey of variation from Europe and Asia. Theor Appl Genet 95:751-756
    • (1997) Theor Appl Genet , vol.95 , pp. 751-756
    • Fukunaga, K.1    Domon, E.2    Kawase, M.3
  • 8
    • 0036165461 scopus 로고    scopus 로고
    • Geographical variation of nuclear genome RFLPs and genetic differentiation in foxtail millet, Setaria italica (L.) P. Beauv.
    • Fukunaga K, Wang ZM, Kato K, Kawase M (2002) Geographical variation of nuclear genome RFLPs and genetic differentiation in foxtail millet, Setaria italica (L.) P. Beauv. Genet Res Crop Evol 49:95-101
    • (2002) Genet Res Crop Evol , vol.49 , pp. 95-101
    • Fukunaga, K.1    Wang, Z.M.2    Kato, K.3    Kawase, M.4
  • 9
    • 0000711516 scopus 로고
    • Molecular characterization of the waxy locus of rice (Oryza sative)
    • Hirano HY, Sano Y (1991) Molecular characterization of the waxy locus of rice (Oryza sative). Plant Cell Physiol 32:989-997
    • (1991) Plant Cell Physiol , vol.32 , pp. 989-997
    • Hirano, H.Y.1    Sano, Y.2
  • 10
    • 0031904473 scopus 로고    scopus 로고
    • A single base change altered the regulation of the Waxy gene at the posttranscriptional level during the domestication of rice
    • Hirano HY, Eiguchi M, Sano Y (1998) A single base change altered the regulation of the Waxy gene at the posttranscriptional level during the domestication of rice. Mol Biol Evol 15:978-987
    • (1998) Mol Biol Evol , vol.15 , pp. 978-987
    • Hirano, H.Y.1    Eiguchi, M.2    Sano, Y.3
  • 11
    • 0006974664 scopus 로고    scopus 로고
    • Molecular cloning of a sorghum cDNA (Accession No. U23945) encoding the seed waxy protein (PGR96-119)
    • Hsieh J, Liu C, Hsing YC (1996) Molecular cloning of a sorghum cDNA (Accession No. U23945) encoding the seed waxy protein (PGR96-119). Plant Physiol 112:1735
    • (1996) Plant Physiol , vol.112 , pp. 1735
    • Hsieh, J.1    Liu, C.2    Hsing, Y.C.3
  • 12
    • 0033848026 scopus 로고    scopus 로고
    • Analysis of intragenetic recombination at wx in rice: Correlation between the molecular and genetic maps within the locus
    • Inukai T, Sako A, Hirano HY, Sano Y (2000) Analysis of intragenetic recombination at wx in rice: Correlation between the molecular and genetic maps within the locus. Genome 43:589-596
    • (2000) Genome , vol.43 , pp. 589-596
    • Inukai, T.1    Sako, A.2    Hirano, H.Y.3    Sano, Y.4
  • 13
    • 0032127572 scopus 로고    scopus 로고
    • A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5′ splice site of the first intron
    • Issiki M, Morino K, Nakajima M, Okagaki RJ, Wessler SR, Izawa T, Shimamoto K (1998) A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5′ splice site of the first intron. Plant J 15:133-138
    • (1998) Plant J , vol.15 , pp. 133-138
    • Issiki, M.1    Morino, K.2    Nakajima, M.3    Okagaki, R.J.4    Wessler, S.R.5    Izawa, T.6    Shimamoto, K.7
  • 14
    • 0033059511 scopus 로고    scopus 로고
    • p-SINE1-like intron of the CatA catalase homologs and phylogenetic relationships among AA-genome Oryza and related species
    • Iwamoto M, Nagashima H, Nagamine T, Higo H, Higo K (1999a) p-SINE1-like intron of the CatA catalase homologs and phylogenetic relationships among AA-genome Oryza and related species. Theor Appl Genet 98:853-861
    • (1999) Theor Appl Genet , vol.98 , pp. 853-861
    • Iwamoto, M.1    Nagashima, H.2    Nagamine, T.3    Higo, H.4    Higo, K.5
  • 15
    • 0032694962 scopus 로고    scopus 로고
    • A Tourist element in the 5′-flanking region of the catalase gene CatA reveals evolutionary relationships among Oryza species with various genome types
    • Iwamoto M, Nagashima H, Nagamine T, Higo H, Higo K (1999b) A Tourist element in the 5′-flanking region of the catalase gene CatA reveals evolutionary relationships among Oryza species with various genome types. Mol Gen Genet 262:493-500
    • (1999) Mol Gen Genet , vol.262 , pp. 493-500
    • Iwamoto, M.1    Nagashima, H.2    Nagamine, T.3    Higo, H.4    Higo, K.5
  • 16
    • 0033844587 scopus 로고    scopus 로고
    • Inter-and intra-specific distribution of Stowaway transposable elements in AA-genome species of wild rice
    • Kanazawa A, Akimoto M, Morishima H, Shimamoto Y (2000) Inter-and intra-specific distribution of Stowaway transposable elements in AA-genome species of wild rice. Theor Appl Genet 101:327-335
    • (2000) Theor Appl Genet , vol.101 , pp. 327-335
    • Kanazawa, A.1    Akimoto, M.2    Morishima, H.3    Shimamoto, Y.4
  • 17
    • 0001921450 scopus 로고
    • Geographical distribution of landrace groups classified by intraspecific hybrid pollen sterility in foxtail millet, Setaria italica (L.) P. Beauv.
    • Kawase M, Sakamoto S (1987) Geographical distribution of landrace groups classified by intraspecific hybrid pollen sterility in foxtail millet, Setaria italica (L.) P. Beauv. Jpn J Breed 37:1-9
    • (1987) Jpn J Breed , vol.37 , pp. 1-9
    • Kawase, M.1    Sakamoto, S.2
  • 19
    • 0031796608 scopus 로고    scopus 로고
    • Granule-bound starch synthase: Structure, function, and phylogenetic utility
    • Mason-Gamer RJ, Weil CF, Kellogg EA (1998) Granule-bound starch synthase: Structure, function, and phylogenetic utility. Mol Biol Evol 15:1658-1673
    • (1998) Mol Biol Evol , vol.15 , pp. 1658-1673
    • Mason-Gamer, R.J.1    Weil, C.F.2    Kellogg, E.A.3
  • 20
    • 0027368062 scopus 로고
    • Classification and relationships of rice strains with AA genome by identification of transposable elements at nine loci
    • Mochizuki K, Ohtsubo H, Hirano H-Y, Sano Y, Ohtsubo E (1993) Classification and relationships of rice strains with AA genome by identification of transposable elements at nine loci. Jpn J Genet 68:205-217
    • (1993) Jpn J Genet , vol.68 , pp. 205-217
    • Mochizuki, K.1    Ohtsubo, H.2    Hirano, H.-Y.3    Sano, Y.4    Ohtsubo, E.5
  • 21
    • 0031822751 scopus 로고    scopus 로고
    • Intraspecific differentiation and geographical distribution of Wx alleles for low amylose content in endosperm of foxtail millet, Setaria italica (L.) P. Beauv.
    • Nakayama H, Afzal M, Okuno K (1998) Intraspecific differentiation and geographical distribution of Wx alleles for low amylose content in endosperm of foxtail millet, Setaria italica (L.) P. Beauv. Euphytica 102:289-293
    • (1998) Euphytica , vol.102 , pp. 289-293
    • Nakayama, H.1    Afzal, M.2    Okuno, K.3
  • 22
    • 0026877443 scopus 로고
    • Nucleotide sequence of a long cDNA from the rice waxy gene
    • Okagaki RJ, Wessler SR (1992) Nucleotide sequence of a long cDNA from the rice waxy gene. Plant Mol Biol 19:513-516
    • (1992) Plant Mol Biol , vol.19 , pp. 513-516
    • Okagaki, R.J.1    Wessler, S.R.2
  • 23
    • 0024297043 scopus 로고
    • Structural analysis of the waxy locus from Hordeum vulgare
    • Rohde W, Becker D, Salamini F (1988) Structural analysis of the waxy locus from Hordeum vulgare. Nucleic Acids Res 16:7185-7186
    • (1988) Nucleic Acids Res , vol.16 , pp. 7185-7186
    • Rohde, W.1    Becker, D.2    Salamini, F.3
  • 24
    • 0002730182 scopus 로고
    • Origin and dispersal of common millet and foxtail millet
    • Sakamoto S (1987) Origin and dispersal of common millet and foxtail millet. Japan Agric Res Quart 21:84-89
    • (1987) Japan Agric Res Quart , vol.21 , pp. 84-89
    • Sakamoto, S.1
  • 25
    • 0025936548 scopus 로고
    • Diversification of the rice Waxy gene by insertion of mobile DNA elements into introns
    • Umeda M, Ohtsubo H, Ohtsubo E (1991) Diversification of the rice Waxy gene by insertion of mobile DNA elements into introns. Jpn J Genet 66:569-586
    • (1991) Jpn J Genet , vol.66 , pp. 569-586
    • Umeda, M.1    Ohtsubo, H.2    Ohtsubo, E.3
  • 26
    • 0026885574 scopus 로고
    • Alternative splicing induced by insertion of retrotransposons into the maize waxy gene
    • Varagona MJ, M Purugganan, SR Wessler (1992) Alternative splicing induced by insertion of retrotransposons into the maize waxy gene. Plant Cell 4:811-820
    • (1992) Plant Cell , vol.4 , pp. 811-820
    • Varagona, M.J.1    Purugganan, M.2    Wessler, S.R.3
  • 27
    • 0033007147 scopus 로고    scopus 로고
    • Molecular characterization of waxy mutations in wheat
    • Vrinten P, Nakamura T, Yamamori M (1999) Molecular characterization of waxy mutations in wheat. Mol Gen Genet 261:463-471
    • (1999) Mol Gen Genet , vol.261 , pp. 463-471
    • Vrinten, P.1    Nakamura, T.2    Yamamori, M.3
  • 29
    • 0022081325 scopus 로고
    • Molecular basis of mutations at waxy locus of maize: Correlation with the fine structure genetic map
    • Wessler SR, Varagona MJ (1985) Molecular basis of mutations at waxy locus of maize: Correlation with the fine structure genetic map. Proc Natl Acad Sci USA 82:4177-4181
    • (1985) Proc Natl Acad Sci USA , vol.82 , pp. 4177-4181
    • Wessler, S.R.1    Varagona, M.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.